Wall clock time and date at job start Tue Mar 31 2020 07:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99894 * 2 1 4 4 C 1.52998 * 109.47456 * 125.00161 * 3 2 1 5 5 C 1.52995 * 109.47628 * 180.02562 * 4 3 2 6 6 C 1.52990 * 109.47336 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99688 * 180.02562 * 7 6 5 9 9 O 1.21585 * 120.00226 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.40022 * 120.00176 * 175.49455 * 10 8 7 12 12 C 1.38908 * 120.00352 * 215.12379 * 11 10 8 13 13 C 1.38003 * 120.00179 * 180.02562 * 12 11 10 14 14 C 1.38899 * 119.99996 * 0.02562 * 13 12 11 15 15 O 1.35783 * 119.99801 * 179.97438 * 14 13 12 16 16 C 1.34820 * 117.00252 * 5.33726 * 15 14 13 17 17 H 1.08001 * 119.99593 * 354.96888 * 16 15 14 18 18 C 1.38634 * 120.00020 * 174.96470 * 16 15 14 19 19 N 1.31572 * 119.99774 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47012 * 90.00521 * 20 18 16 22 22 H 1.48498 * 109.46951 * 210.00132 * 20 18 16 23 23 H 1.48501 * 109.47460 * 330.00194 * 20 18 16 24 24 C 1.38902 * 120.00661 * 0.26478 * 14 13 12 25 25 C 1.38008 * 119.99473 * 359.45951 * 24 14 13 26 26 H 1.08006 * 120.00198 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99660 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00339 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46693 * 4.99923 * 3 2 1 30 30 H 1.09000 * 109.47187 * 245.00426 * 3 2 1 31 31 H 1.08996 * 109.47011 * 59.99563 * 4 3 2 32 32 H 1.09009 * 109.46946 * 300.00097 * 4 3 2 33 33 H 1.09002 * 109.46622 * 59.99700 * 5 4 3 34 34 H 1.09000 * 109.47086 * 300.00309 * 5 4 3 35 35 H 1.09002 * 109.47238 * 60.00410 * 6 5 4 36 36 H 1.09000 * 109.47557 * 300.00353 * 6 5 4 37 37 H 0.96993 * 120.00341 * 0.02562 * 7 6 5 38 38 H 0.96997 * 119.99675 * 355.48546 * 10 8 7 39 39 H 1.07998 * 119.99489 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.00410 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.00563 * 179.70790 * 24 14 13 43 43 H 1.08001 * 120.00490 * 180.27632 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7996 2.6585 1.1820 6 6 4.7706 2.6867 2.3639 7 7 5.5031 3.9555 2.3638 8 6 6.4198 4.2043 3.3200 9 8 6.6393 3.3757 4.1822 10 7 7.0934 5.3718 3.3203 11 6 7.9763 5.6704 4.3651 12 6 8.1073 6.9794 4.8111 13 6 8.9780 7.2738 5.8406 14 6 9.7238 6.2613 6.4304 15 8 10.5808 6.5510 7.4430 16 6 10.5796 7.8187 7.9020 17 1 9.9766 8.5695 7.4131 18 6 11.3525 8.1584 9.0017 19 7 12.0874 7.2437 9.5970 20 14 11.3513 9.9149 9.6372 21 1 10.2801 10.0729 10.6534 22 1 12.6675 10.2189 10.2542 23 1 11.1057 10.8493 8.5095 24 6 9.5974 4.9532 5.9805 25 6 8.7225 4.6579 4.9549 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 3.7399 0.5067 1.0920 32 1 2.4772 1.2357 2.1130 33 1 3.0943 3.4847 1.2718 34 1 4.3573 2.7565 0.2506 35 1 5.4759 1.8605 2.2745 36 1 4.2126 2.5889 3.2951 37 1 5.3283 4.6164 1.6758 38 1 6.9665 6.0050 2.5966 39 1 7.5284 7.7669 4.3517 40 1 9.0802 8.2916 6.1872 41 1 12.6285 7.4815 10.3663 42 1 10.1807 4.1667 6.4359 43 1 8.6208 3.6402 4.6079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116631850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:41 Heat of formation + Delta-G solvation = -44.566514 kcal Electronic energy + Delta-G solvation = -22854.420286 eV Core-core repulsion = 19285.679725 eV Total energy + Delta-G solvation = -3568.740561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59825 -40.45889 -38.45043 -37.52423 -35.85434 -35.39029 -34.15101 -33.14903 -31.84529 -29.86169 -28.54649 -27.25154 -24.73947 -23.85685 -22.97207 -22.33087 -21.70854 -20.59795 -19.99467 -19.23175 -18.96491 -18.08762 -17.04976 -16.45090 -16.37611 -16.27176 -16.10876 -15.63298 -15.52415 -15.29752 -15.08616 -14.66243 -14.51056 -14.21456 -13.99797 -13.57354 -13.40338 -13.26026 -13.19353 -12.88478 -12.66520 -12.46050 -12.33847 -12.09967 -12.05762 -11.69625 -11.47922 -11.34357 -11.29721 -10.95323 -10.54131 -10.16924 -10.07768 -9.82107 -8.55898 -8.43163 -6.10743 0.54870 0.60837 1.38016 1.43004 1.47321 1.55907 1.65840 2.11381 2.21099 2.86196 3.18346 3.26551 3.55065 3.83993 4.02360 4.05681 4.08399 4.16680 4.28383 4.48750 4.52398 4.53201 4.59909 4.68472 4.76977 4.82390 4.89948 4.95494 5.07008 5.09946 5.14225 5.22487 5.32971 5.35710 5.42057 5.47260 5.50377 5.61435 5.71369 5.80641 5.93168 6.03042 6.06580 6.22073 7.00891 7.08302 7.56229 7.82323 8.80146 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.047900 B = 0.001819 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.410817 B =15388.238522 C =15566.428695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C -0.091 4.091 4 C -0.111 4.111 5 C -0.117 4.117 6 C 0.136 3.864 7 N -0.726 5.726 8 C 0.694 3.306 9 O -0.623 6.623 10 N -0.662 5.662 11 C 0.081 3.919 12 C -0.080 4.080 13 C -0.219 4.219 14 C 0.106 3.894 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.107 0.893 18 C -0.026 4.026 19 N -0.923 5.923 20 Si 1.021 2.979 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.248 1.248 24 C -0.190 4.190 25 C -0.075 4.075 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.271 0.729 42 H 0.110 0.890 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.125 -5.251 -22.957 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.182 4.182 3 C -0.128 4.128 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.012 3.988 7 N -0.382 5.382 8 C 0.394 3.606 9 O -0.504 6.504 10 N -0.312 5.312 11 C -0.014 4.014 12 C -0.100 4.100 13 C -0.239 4.239 14 C 0.055 3.945 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.124 0.876 18 C -0.223 4.223 19 N -0.561 5.561 20 Si 0.840 3.160 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.172 1.172 24 C -0.210 4.210 25 C -0.095 4.095 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.252 0.748 38 H 0.261 0.739 39 H 0.177 0.823 40 H 0.151 0.849 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.696 -6.183 -21.956 30.799 hybrid contribution 0.287 0.756 0.222 0.839 sum -20.408 -5.426 -21.734 30.304 Atomic orbital electron populations 1.24014 0.96184 1.02341 1.01462 1.23134 0.96291 0.99113 0.99664 1.20751 0.98090 0.95180 0.98804 1.21413 0.97884 0.97032 0.98614 1.21719 0.97551 0.99040 0.97168 1.21289 0.93845 0.84161 0.99529 1.44927 1.41050 1.21732 1.30533 1.16207 0.79783 0.82219 0.82398 1.90918 1.70475 1.47943 1.41031 1.42081 1.43606 1.20079 1.25416 1.17147 0.95898 0.93454 0.94873 1.20808 0.98261 0.95362 0.95560 1.21115 1.02211 0.99486 1.01066 1.19860 0.90633 0.94495 0.89497 1.83961 1.52959 1.31936 1.45144 1.21886 1.29427 0.83924 1.13641 0.87565 1.26634 0.95082 1.05127 0.95424 1.70213 1.27939 1.36310 1.21682 0.84554 0.78269 0.74225 0.78947 1.19031 1.19845 1.17168 1.20255 1.04603 0.93852 1.02285 1.20866 0.93336 0.99668 0.95614 0.88204 0.88188 0.87268 0.91058 0.90139 0.91566 0.92180 0.90024 0.89684 0.92743 0.93110 0.74777 0.73892 0.82265 0.84918 0.91961 0.87172 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 14.32 67.78 0.97 -0.99 16 2 C -0.16 -1.61 9.52 25.65 0.24 -1.36 16 3 C -0.09 -0.71 5.66 29.85 0.17 -0.55 16 4 C -0.11 -1.00 5.20 30.59 0.16 -0.84 16 5 C -0.12 -0.94 5.33 30.59 0.16 -0.78 16 6 C 0.14 2.13 5.67 86.38 0.49 2.62 16 7 N -0.73 -11.98 5.56 -478.53 -2.66 -14.65 16 8 C 0.69 18.71 8.41 179.05 1.51 20.22 16 9 O -0.62 -23.47 13.78 -3.98 -0.05 -23.53 16 10 N -0.66 -16.09 5.34 -317.04 -1.69 -17.78 16 11 C 0.08 2.74 6.30 38.16 0.24 2.98 16 12 C -0.08 -2.65 9.96 22.37 0.22 -2.42 16 13 C -0.22 -9.37 9.16 22.37 0.20 -9.17 16 14 C 0.11 5.43 6.65 22.59 0.15 5.58 16 15 O -0.23 -14.35 9.76 -23.01 -0.22 -14.57 16 16 C -0.41 -24.09 9.48 67.91 0.64 -23.45 16 17 H 0.11 5.56 5.20 -2.91 -0.02 5.54 16 18 C -0.03 -1.46 5.49 84.83 0.47 -1.00 16 19 N -0.92 -57.53 13.67 21.61 0.30 -57.24 16 20 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 21 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 24 C -0.19 -8.96 9.99 22.37 0.22 -8.73 16 25 C -0.07 -3.03 8.69 22.38 0.19 -2.84 16 26 H 0.10 0.85 7.84 -2.91 -0.02 0.82 16 27 H 0.10 0.84 8.06 -2.91 -0.02 0.82 16 28 H 0.11 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.07 0.51 7.79 -2.39 -0.02 0.49 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 3.52 8.49 -92.71 -0.79 2.73 16 38 H 0.42 6.22 8.84 -92.71 -0.82 5.40 16 39 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 40 H 0.13 5.57 5.63 -2.91 -0.02 5.55 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 43 H 0.13 5.34 6.23 -2.91 -0.02 5.32 16 Total: -1.00 -79.91 366.36 3.16 -76.75 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.58 Total: 26.87 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 6.05 Total: -20.71 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -4.06 Total: -89.66 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.28 Total: -38.10 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -79.91 3.16 -76.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116631850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.187 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds