Wall clock time and date at job start Tue Mar 31 2020 09:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 C 1.52995 * 109.46810 * 119.99755 * 2 1 3 5 5 N 1.46505 * 109.46774 * 175.00247 * 4 2 1 6 6 C 1.34779 * 119.99905 * 180.02562 * 5 4 2 7 7 O 1.21554 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.00235 * 179.97438 * 6 5 4 9 9 C 1.39617 * 120.10867 * 359.97438 * 8 6 5 10 10 C 1.37978 * 119.99741 * 180.02562 * 9 8 6 11 11 C 1.38260 * 120.22090 * 359.74178 * 10 9 8 12 12 C 1.38946 * 120.22056 * 0.51079 * 11 10 9 13 13 N 1.39951 * 119.99661 * 179.76471 * 12 11 10 14 14 C 1.34783 * 120.00132 * 214.82655 * 13 12 11 15 15 O 1.21286 * 119.99449 * 355.38794 * 14 13 12 16 16 C 1.50695 * 120.00210 * 175.38786 * 14 13 12 17 17 C 1.50700 * 109.47416 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99494 * 359.97438 * 17 16 14 19 19 C 1.37870 * 120.00278 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47332 * 119.99944 * 21 19 17 24 24 H 1.48500 * 109.47158 * 239.99956 * 21 19 17 25 25 C 1.38636 * 120.00237 * 359.49370 * 12 11 10 26 26 H 1.08997 * 109.47205 * 300.00318 * 1 2 3 27 27 H 1.09008 * 109.46983 * 60.00332 * 1 2 3 28 28 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47205 * 239.99682 * 2 1 3 30 30 H 1.08995 * 109.46632 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46646 * 300.00028 * 3 2 1 32 32 H 1.08993 * 109.46950 * 59.99852 * 3 2 1 33 33 H 1.09001 * 109.47668 * 55.00394 * 4 2 1 34 34 H 1.08996 * 109.47397 * 294.99773 * 4 2 1 35 35 H 0.96995 * 120.00005 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.00389 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.89171 * 179.97438 * 10 9 8 38 38 H 1.07996 * 119.88521 * 180.28084 * 11 10 9 39 39 H 0.96995 * 120.00496 * 34.82780 * 13 12 11 40 40 H 1.08999 * 109.47335 * 59.99435 * 16 14 13 41 41 H 1.09011 * 109.47190 * 299.99650 * 16 14 13 42 42 H 0.96998 * 119.99971 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.10821 * 180.23011 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4290 2.1908 7 8 3.5685 -1.8859 3.1412 8 6 5.6465 -1.5356 2.1314 9 6 6.3431 -1.0131 1.0400 10 6 7.7181 -1.1143 0.9867 11 6 8.4111 -1.7275 2.0140 12 6 7.7267 -2.2553 3.1019 13 7 8.4325 -2.8793 4.1368 14 6 7.8960 -3.9378 4.7760 15 8 6.7682 -4.2975 4.5120 16 6 8.6973 -4.6741 5.8184 17 6 7.8753 -5.8075 6.3759 18 1 6.8727 -5.9773 6.0120 19 6 8.4031 -6.6276 7.3504 20 7 9.6242 -6.4211 7.7931 21 14 7.3845 -8.0329 8.0410 22 1 6.0546 -8.0514 7.3805 23 1 8.0810 -9.3198 7.7885 24 1 7.2078 -7.8443 9.5033 25 6 6.3452 -2.1588 3.1650 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1582 2.1369 35 1 3.9823 -0.4627 0.4316 36 1 5.8056 -0.5305 0.2371 37 1 8.2552 -0.7099 0.1414 38 1 9.4877 -1.7997 1.9689 39 1 9.3079 -2.5502 4.3943 40 1 8.9644 -3.9885 6.6226 41 1 9.6046 -5.0729 5.3645 42 1 9.9955 -6.9978 8.4790 43 1 5.8117 -2.5651 4.0116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:27 Heat of formation + Delta-G solvation = -63.417865 kcal Electronic energy + Delta-G solvation = -23817.255356 eV Core-core repulsion = 20247.697339 eV Total energy + Delta-G solvation = -3569.558017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41819 -39.42845 -37.79528 -36.81029 -34.33823 -33.39050 -32.99158 -31.06355 -30.09101 -28.36685 -27.59816 -26.61395 -24.03083 -23.49225 -22.25973 -20.85255 -20.34251 -19.73701 -18.18346 -16.62977 -16.37866 -16.25757 -16.03235 -15.64030 -15.55147 -14.90796 -14.56019 -14.49988 -14.21719 -13.98869 -13.71626 -13.46242 -13.22087 -12.88814 -12.80511 -12.54436 -12.34328 -12.15453 -11.91359 -11.53920 -11.45928 -11.32820 -11.31062 -11.11713 -10.77478 -10.71431 -10.07085 -9.98856 -9.86728 -9.30525 -9.22776 -8.95955 -8.68971 -8.46989 -7.92256 -6.09259 -4.09114 0.89412 1.44086 2.88430 3.02591 3.33554 3.40639 3.48503 3.51187 3.65482 4.01157 4.34688 4.47486 4.47820 4.60448 4.69053 4.82662 5.04137 5.13460 5.22189 5.23033 5.29531 5.30498 5.41557 5.45272 5.52589 5.56993 5.61241 5.70774 5.83527 5.86099 5.90650 6.12643 6.28069 6.30388 6.41989 6.50315 6.66136 7.06519 7.22286 7.23144 7.40197 7.84057 7.94894 8.21227 8.28026 8.98853 9.02938 9.56441 11.03036 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.002847 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.364857 B = 9832.398931 C =11185.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.123 3.877 5 N -0.730 5.730 6 C 0.558 3.442 7 O -0.526 6.526 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.109 4.109 11 C -0.131 4.131 12 C 0.157 3.843 13 N -0.691 5.691 14 C 0.511 3.489 15 O -0.516 6.516 16 C 0.008 3.992 17 C -0.510 4.510 18 H 0.077 0.923 19 C 0.055 3.945 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.066 4.066 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.398 0.602 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.409 0.591 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.262 0.738 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 17.607 -18.729 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C -0.001 4.001 5 N -0.384 5.384 6 C 0.346 3.654 7 O -0.402 6.402 8 C -0.124 4.124 9 C -0.138 4.138 10 C -0.127 4.127 11 C -0.152 4.152 12 C 0.061 3.939 13 N -0.337 5.337 14 C 0.302 3.698 15 O -0.389 6.389 16 C -0.032 4.032 17 C -0.548 4.548 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.540 5.540 21 Si 0.729 3.271 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.087 4.087 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.245 0.755 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.029 16.846 -18.014 26.265 hybrid contribution 0.404 -0.400 0.091 0.576 sum -8.624 16.447 -17.924 25.810 Atomic orbital electron populations 1.21765 0.93956 1.02334 1.02254 1.21365 0.96830 0.96684 0.97884 1.21880 1.01069 0.95556 1.02189 1.21442 0.79652 1.00918 0.98083 1.45895 1.07682 1.60855 1.23979 1.18335 0.87281 0.77590 0.82201 1.90822 1.69754 1.46633 1.32971 1.19722 0.92471 1.03258 0.96981 1.21077 0.94620 1.00741 0.97318 1.20780 0.93728 0.99839 0.98392 1.21142 1.00346 1.01068 0.92669 1.17866 0.91520 0.95006 0.89473 1.44182 1.22147 1.32387 1.35022 1.22406 0.87965 0.77777 0.81618 1.90589 1.19255 1.65443 1.63652 1.19282 0.96187 0.95893 0.91796 1.21190 1.01441 1.11643 1.20550 0.90477 1.24999 0.95139 0.98000 0.96402 1.69962 1.14852 1.39321 1.29857 0.86357 0.80581 0.81504 0.78636 1.19374 1.20976 1.20943 1.21553 0.92938 0.94956 0.99244 0.92236 0.92170 0.92229 0.90507 0.92608 0.92366 0.92285 0.91307 0.91313 0.76624 0.86233 0.85390 0.85318 0.75498 0.93000 0.92999 0.92882 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.11 -0.69 2.96 -90.62 -0.27 -0.96 16 3 C -0.15 -0.84 9.07 37.16 0.34 -0.51 16 4 C 0.12 1.17 5.06 -4.04 -0.02 1.15 16 5 N -0.73 -7.77 5.23 -61.25 -0.32 -8.09 16 6 C 0.56 8.62 7.77 -12.32 -0.10 8.52 16 7 O -0.53 -10.54 16.34 5.32 0.09 -10.45 16 8 C -0.12 -1.81 5.87 -104.99 -0.62 -2.42 16 9 C -0.12 -1.29 9.54 -39.16 -0.37 -1.66 16 10 C -0.11 -1.13 10.02 -39.67 -0.40 -1.52 16 11 C -0.13 -1.61 9.96 -39.31 -0.39 -2.01 16 12 C 0.16 2.56 6.29 -83.74 -0.53 2.03 16 13 N -0.69 -11.92 5.34 -9.90 -0.05 -11.98 16 14 C 0.51 11.56 7.67 -10.98 -0.08 11.47 16 15 O -0.52 -13.49 12.89 5.55 0.07 -13.42 16 16 C 0.01 0.19 5.46 -29.04 -0.16 0.03 16 17 C -0.51 -14.77 8.92 -34.44 -0.31 -15.08 16 18 H 0.08 2.35 6.75 -52.49 -0.35 2.00 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 21 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C -0.07 -1.20 8.24 -38.98 -0.32 -1.52 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.30 7.18 -51.93 -0.37 -0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.03 5.68 -40.82 -0.23 2.80 16 36 H 0.12 0.87 6.40 -52.48 -0.34 0.53 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.41 5.60 8.82 -40.82 -0.36 5.24 16 40 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.05 1.29 8.14 -51.92 -0.42 0.87 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 43 H 0.16 3.44 5.81 -52.49 -0.30 3.14 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -35.55 361.93 -8.19 -43.74 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.17 Total: 4.41 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.98 Total: -1.46 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.36 Total: -45.57 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.16 Total: -23.87 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.55 -8.19 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.676 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds