Wall clock time and date at job start Tue Mar 31 2020 09:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46920 * 2 1 4 4 C 1.52995 * 109.46810 * 119.99755 * 2 1 3 5 5 N 1.46505 * 109.46774 * 175.00247 * 4 2 1 6 6 C 1.34779 * 119.99905 * 180.02562 * 5 4 2 7 7 O 1.21554 * 120.00053 * 0.02562 * 6 5 4 8 8 C 1.47857 * 120.00235 * 179.97438 * 6 5 4 9 9 C 1.39617 * 120.10867 * 359.97438 * 8 6 5 10 10 C 1.37978 * 119.99741 * 180.02562 * 9 8 6 11 11 C 1.38260 * 120.22090 * 359.74178 * 10 9 8 12 12 C 1.38946 * 120.22056 * 0.51079 * 11 10 9 13 13 N 1.39951 * 119.99661 * 179.76471 * 12 11 10 14 14 C 1.34783 * 120.00132 * 214.82655 * 13 12 11 15 15 O 1.21286 * 119.99449 * 355.38794 * 14 13 12 16 16 C 1.50695 * 120.00210 * 175.38786 * 14 13 12 17 17 C 1.50700 * 109.47416 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99494 * 359.97438 * 17 16 14 19 19 C 1.37870 * 120.00278 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47332 * 119.99944 * 21 19 17 24 24 H 1.48500 * 109.47158 * 239.99956 * 21 19 17 25 25 C 1.38636 * 120.00237 * 359.49370 * 12 11 10 26 26 H 1.08997 * 109.47205 * 300.00318 * 1 2 3 27 27 H 1.09008 * 109.46983 * 60.00332 * 1 2 3 28 28 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47205 * 239.99682 * 2 1 3 30 30 H 1.08995 * 109.46632 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46646 * 300.00028 * 3 2 1 32 32 H 1.08993 * 109.46950 * 59.99852 * 3 2 1 33 33 H 1.09001 * 109.47668 * 55.00394 * 4 2 1 34 34 H 1.08996 * 109.47397 * 294.99773 * 4 2 1 35 35 H 0.96995 * 120.00005 * 359.97438 * 5 4 2 36 36 H 1.08005 * 120.00389 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.89171 * 179.97438 * 10 9 8 38 38 H 1.07996 * 119.88521 * 180.28084 * 11 10 9 39 39 H 0.96995 * 120.00496 * 34.82780 * 13 12 11 40 40 H 1.08999 * 109.47335 * 59.99435 * 16 14 13 41 41 H 1.09011 * 109.47190 * 299.99650 * 16 14 13 42 42 H 0.96998 * 119.99971 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.10821 * 180.23011 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1730 -1.4290 2.1908 7 8 3.5685 -1.8859 3.1412 8 6 5.6465 -1.5356 2.1314 9 6 6.3431 -1.0131 1.0400 10 6 7.7181 -1.1143 0.9867 11 6 8.4111 -1.7275 2.0140 12 6 7.7267 -2.2553 3.1019 13 7 8.4325 -2.8793 4.1368 14 6 7.8960 -3.9378 4.7760 15 8 6.7682 -4.2975 4.5120 16 6 8.6973 -4.6741 5.8184 17 6 7.8753 -5.8075 6.3759 18 1 6.8727 -5.9773 6.0120 19 6 8.4031 -6.6276 7.3504 20 7 9.6242 -6.4211 7.7931 21 14 7.3845 -8.0329 8.0410 22 1 6.0546 -8.0514 7.3805 23 1 8.0810 -9.3198 7.7885 24 1 7.2078 -7.8443 9.5033 25 6 6.3452 -2.1588 3.1650 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1582 2.1369 35 1 3.9823 -0.4627 0.4316 36 1 5.8056 -0.5305 0.2371 37 1 8.2552 -0.7099 0.1414 38 1 9.4877 -1.7997 1.9689 39 1 9.3079 -2.5502 4.3943 40 1 8.9644 -3.9885 6.6226 41 1 9.6046 -5.0729 5.3645 42 1 9.9955 -6.9978 8.4790 43 1 5.8117 -2.5651 4.0116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:26 Heat of formation + Delta-G solvation = -88.792878 kcal Electronic energy + Delta-G solvation = -23818.355699 eV Core-core repulsion = 20247.697339 eV Total energy + Delta-G solvation = -3570.658360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67685 -40.81343 -39.09100 -37.66381 -35.79337 -35.16981 -34.35903 -32.11588 -31.72389 -30.01539 -28.04854 -27.49418 -25.96835 -24.55188 -23.59027 -21.75908 -21.32872 -21.22343 -19.32574 -18.56952 -17.88373 -17.43042 -17.11649 -16.98826 -16.60787 -16.45825 -16.31036 -15.58270 -15.30833 -15.17658 -14.76944 -14.51249 -14.45648 -14.26027 -14.03579 -13.71608 -13.35817 -13.23773 -12.92318 -12.87091 -12.80898 -12.66203 -12.60936 -12.11210 -12.05844 -11.87618 -11.65766 -11.49552 -11.45590 -11.09652 -10.66403 -10.59679 -10.29433 -9.89451 -9.18273 -8.30222 -6.37108 -0.19746 0.32704 1.35873 1.36948 1.52014 1.63189 1.88875 2.00867 2.22773 2.43048 2.87717 3.05219 3.64230 3.75966 3.92098 3.93207 4.07840 4.12650 4.20076 4.25821 4.48873 4.55606 4.56351 4.64639 4.77217 4.83420 4.93389 4.99460 4.99909 5.02905 5.18863 5.21374 5.26203 5.28812 5.31932 5.36021 5.40262 5.46242 5.50603 5.68806 5.97557 5.99248 6.45669 6.56521 6.75879 7.13226 7.26122 7.37170 8.81936 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.002847 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.364857 B = 9832.398931 C =11185.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.149 4.149 4 C 0.119 3.881 5 N -0.704 5.704 6 C 0.551 3.449 7 O -0.589 6.589 8 C -0.138 4.138 9 C -0.093 4.093 10 C -0.093 4.093 11 C -0.113 4.113 12 C 0.123 3.877 13 N -0.671 5.671 14 C 0.514 3.486 15 O -0.562 6.562 16 C 0.013 3.987 17 C -0.540 4.540 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.920 5.920 21 Si 0.962 3.038 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.103 4.103 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.426 0.574 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.269 0.731 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 19.578 -22.297 30.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.207 4.207 4 C -0.005 4.005 5 N -0.357 5.357 6 C 0.340 3.660 7 O -0.470 6.470 8 C -0.142 4.142 9 C -0.112 4.112 10 C -0.111 4.111 11 C -0.133 4.133 12 C 0.029 3.971 13 N -0.318 5.318 14 C 0.305 3.695 15 O -0.439 6.439 16 C -0.027 4.027 17 C -0.578 4.578 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.787 3.213 22 H -0.206 1.206 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.125 4.125 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.737 18.895 -21.653 29.761 hybrid contribution 0.011 -0.884 1.075 1.392 sum -7.726 18.011 -20.578 28.417 Atomic orbital electron populations 1.21786 0.93500 1.02271 1.02856 1.21326 0.97124 0.96993 0.96226 1.21894 1.01483 0.94697 1.02595 1.21571 0.78865 1.00387 0.99663 1.45714 1.08147 1.58824 1.23046 1.18652 0.87872 0.77287 0.82237 1.90789 1.70928 1.49645 1.35663 1.19775 0.92189 1.04323 0.97889 1.21603 0.95377 0.98061 0.96123 1.21423 0.93375 0.97560 0.98717 1.21565 1.02034 0.98703 0.91000 1.18072 0.90938 0.97277 0.90813 1.43656 1.22556 1.30771 1.34819 1.21859 0.87033 0.78972 0.81644 1.90585 1.20898 1.67242 1.65176 1.19091 0.95869 0.95224 0.92484 1.21354 1.01014 1.13709 1.21707 0.93171 1.25725 0.96287 1.00126 0.96394 1.70013 1.15687 1.40178 1.30119 0.85446 0.78564 0.79058 0.78276 1.20551 1.19314 1.19590 1.21259 0.94177 0.97698 0.99347 0.92701 0.90498 0.92699 0.89026 0.91947 0.90728 0.93171 0.92973 0.92690 0.74393 0.81506 0.79981 0.81945 0.73462 0.93310 0.92922 0.92225 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.10 -1.05 2.96 -10.79 -0.03 -1.08 16 3 C -0.15 -1.27 9.07 71.98 0.65 -0.62 16 4 C 0.12 2.28 5.06 86.38 0.44 2.71 16 5 N -0.70 -14.29 5.23 -465.96 -2.44 -16.73 16 6 C 0.55 17.68 7.77 86.79 0.67 18.36 16 7 O -0.59 -25.93 16.34 -3.88 -0.06 -26.00 16 8 C -0.14 -4.13 5.87 -20.11 -0.12 -4.25 16 9 C -0.09 -1.63 9.54 22.54 0.21 -1.42 16 10 C -0.09 -1.38 10.02 22.21 0.22 -1.15 16 11 C -0.11 -2.35 9.96 22.44 0.22 -2.12 16 12 C 0.12 4.02 6.29 38.11 0.24 4.26 16 13 N -0.67 -23.78 5.34 -303.60 -1.62 -25.40 16 14 C 0.51 24.73 7.67 87.65 0.67 25.40 16 15 O -0.56 -31.96 12.89 -3.05 -0.04 -32.00 16 16 C 0.01 0.66 5.46 29.10 0.16 0.82 16 17 C -0.54 -32.80 8.92 25.60 0.23 -32.57 16 18 H 0.05 3.27 6.75 -2.91 -0.02 3.25 16 19 C 0.01 0.81 5.46 84.65 0.46 1.27 16 20 N -0.92 -54.17 13.29 21.45 0.28 -53.89 16 21 Si 0.96 46.77 29.54 68.60 2.03 48.80 16 22 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 C -0.10 -3.99 8.24 22.66 0.19 -3.81 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.44 7.18 -2.39 -0.02 0.43 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.42 4.93 5.68 -92.71 -0.53 4.40 16 36 H 0.17 1.32 6.40 -2.91 -0.02 1.30 16 37 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.43 11.57 8.82 -92.71 -0.82 10.75 16 40 H 0.05 2.54 8.14 -2.39 -0.02 2.53 16 41 H 0.05 2.71 8.14 -2.38 -0.02 2.69 16 42 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.10 4.95 5.81 -2.91 -0.02 4.93 16 Total: -1.00 -86.54 361.93 2.73 -83.81 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.31 Total: 16.41 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 4.89 Total: 4.99 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -3.77 Total: -96.02 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.10 Total: -58.00 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.54 2.73 -83.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -86.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds