Wall clock time and date at job start Tue Mar 31 2020 09:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 C 1.52995 * 109.47007 * 60.00319 * 3 2 1 5 5 O 1.42905 * 109.47613 * 59.40161 * 4 3 2 6 6 C 1.52996 * 109.47350 * 299.99673 * 3 2 1 7 7 O 1.42893 * 109.47405 * 301.62590 * 6 3 2 8 8 N 1.46499 * 109.46899 * 179.97438 * 3 2 1 9 9 C 1.39410 * 120.00145 * 185.76559 * 8 3 2 10 10 C 1.38725 * 120.22553 * 353.28296 * 9 8 3 11 11 C 1.38448 * 120.15157 * 179.72429 * 10 9 8 12 12 C 1.37988 * 120.70891 * 0.02562 * 11 10 9 13 13 C 1.39154 * 120.13113 * 359.97438 * 12 11 10 14 14 N 1.38148 * 132.74718 * 179.97438 * 13 12 11 15 15 H 0.96996 * 124.69633 * 359.95174 * 14 13 12 16 16 C 1.35660 * 110.60178 * 179.87084 * 14 13 12 17 17 C 1.38957 * 109.25075 * 0.11964 * 16 14 13 18 18 C 1.40910 * 126.93207 * 179.90729 * 17 16 14 19 19 H 1.08004 * 119.99713 * 187.87540 * 18 17 16 20 20 C 1.39674 * 120.00209 * 7.87054 * 18 17 16 21 21 N 1.31081 * 120.00035 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47012 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46952 * 119.99960 * 22 20 18 25 25 H 1.48500 * 109.46843 * 239.99979 * 22 20 18 26 26 C 1.39768 * 120.22747 * 173.00634 * 9 8 3 27 27 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47245 * 299.99907 * 1 2 3 29 29 H 1.09005 * 109.47173 * 60.00040 * 1 2 3 30 30 H 1.08997 * 109.47245 * 240.00093 * 2 1 3 31 31 H 1.09004 * 109.46749 * 120.00281 * 2 1 3 32 32 H 1.09008 * 109.47350 * 179.40346 * 4 3 2 33 33 H 1.08999 * 109.47247 * 299.39563 * 4 3 2 34 34 H 0.96701 * 113.99720 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46739 * 61.62954 * 6 3 2 36 36 H 1.09004 * 109.47040 * 181.62239 * 6 3 2 37 37 H 0.96705 * 114.00316 * 179.97438 * 7 6 3 38 38 H 0.97005 * 120.00521 * 5.76935 * 8 3 2 39 39 H 1.07997 * 119.92433 * 359.74874 * 10 9 8 40 40 H 1.08001 * 119.64788 * 180.02562 * 11 10 9 41 41 H 1.08007 * 119.93393 * 179.97438 * 12 11 10 42 42 H 1.08007 * 125.37236 * 180.02562 * 16 14 13 43 43 H 0.96995 * 120.00435 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.9948 1.4820 2.4161 6 6 1.5300 2.1637 -1.2492 7 8 1.9749 1.4685 -2.4157 8 7 3.5049 1.4425 0.0006 9 6 4.2020 2.6437 0.1220 10 6 3.5202 3.8518 0.1026 11 6 4.2134 5.0435 0.2290 12 6 5.5855 5.0486 0.3749 13 6 6.2901 3.8488 0.3971 14 7 7.6332 3.5524 0.5263 15 1 8.3368 4.2120 0.6288 16 6 7.8314 2.2108 0.4916 17 6 6.6081 1.5709 0.3335 18 6 6.3835 0.1823 0.2497 19 1 5.4016 -0.1917 -0.0002 20 6 7.4307 -0.7103 0.4896 21 7 8.6225 -0.2563 0.7922 22 14 7.1330 -2.5510 0.3776 23 1 5.7134 -2.8021 0.0213 24 1 8.0151 -3.1325 -0.6659 25 1 7.4341 -3.1816 1.6880 26 6 5.5918 2.6389 0.2699 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9020 3.1883 1.2547 33 1 0.4401 2.1730 1.2439 34 1 1.7085 1.8849 3.2472 35 1 0.4404 2.1891 -1.2347 36 1 1.9169 3.1827 -1.2638 37 1 1.6875 1.8706 -3.2469 38 1 3.9901 0.6067 -0.0835 39 1 2.4463 3.8626 -0.0110 40 1 3.6744 5.9793 0.2132 41 1 6.1137 5.9857 0.4721 42 1 8.7890 1.7179 0.5725 43 1 9.3497 -0.8761 0.9592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167972432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:01 Heat of formation + Delta-G solvation = -27.487189 kcal Electronic energy + Delta-G solvation = -26244.537751 eV Core-core repulsion = 22676.537805 eV Total energy + Delta-G solvation = -3567.999946 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.94567 -38.83098 -36.15580 -35.71600 -34.42858 -33.50129 -32.42592 -29.95576 -28.53398 -27.82790 -27.06268 -25.13971 -24.69401 -23.56233 -21.07997 -20.67616 -19.42133 -18.80745 -17.43995 -17.17686 -17.06305 -16.19660 -15.70581 -15.22082 -14.83418 -14.69133 -14.31365 -14.04587 -13.64930 -13.44570 -12.95805 -12.90379 -12.70691 -12.64400 -12.43814 -11.96861 -11.84690 -11.53350 -11.33353 -11.18220 -11.05083 -10.86438 -10.78074 -10.51393 -10.49836 -10.28353 -9.69687 -9.63609 -9.50474 -9.39957 -9.25913 -8.95881 -7.34608 -6.87226 -6.40141 -5.93558 -3.89279 2.58681 2.82270 3.15067 3.22385 3.27737 3.92349 4.15374 4.23331 4.33809 4.73658 4.94936 4.96994 5.01771 5.14642 5.35276 5.39838 5.47513 5.60423 5.62290 5.69303 5.70358 5.75985 5.86522 6.00519 6.10963 6.23085 6.25829 6.40475 6.51531 6.62865 6.75988 6.94384 7.24524 7.26964 7.32148 7.58953 7.63869 7.80165 7.90549 7.99656 8.02967 8.36692 8.51960 8.74323 8.85811 9.14744 9.25088 9.36759 10.58029 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.006980 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.758616 B = 4010.286012 C = 5659.071095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.192 3.808 4 C 0.050 3.950 5 O -0.552 6.552 6 C 0.053 3.947 7 O -0.555 6.555 8 N -0.716 5.716 9 C 0.294 3.706 10 C -0.301 4.301 11 C -0.069 4.069 12 C -0.213 4.213 13 C 0.119 3.881 14 N -0.588 5.588 15 H 0.392 0.608 16 C -0.105 4.105 17 C 0.031 3.969 18 C -0.414 4.414 19 H 0.066 0.934 20 C 0.057 3.943 21 N -0.833 5.833 22 Si 0.910 3.090 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.187 4.187 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.372 0.628 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.372 0.628 38 H 0.408 0.592 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.186 0.814 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 4.894 -1.177 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.103 3.897 4 C -0.029 4.029 5 O -0.356 6.356 6 C -0.026 4.026 7 O -0.359 6.359 8 N -0.347 5.347 9 C 0.189 3.811 10 C -0.326 4.326 11 C -0.089 4.089 12 C -0.236 4.236 13 C 0.006 3.994 14 N -0.188 5.188 15 H 0.225 0.775 16 C -0.229 4.229 17 C 0.026 3.974 18 C -0.448 4.448 19 H 0.084 0.916 20 C -0.153 4.153 21 N -0.464 5.464 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.197 4.197 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.218 0.782 38 H 0.249 0.751 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.203 0.797 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.567 3.943 -1.111 13.218 hybrid contribution -0.106 -0.018 0.039 0.114 sum -12.673 3.925 -1.072 13.310 Atomic orbital electron populations 1.21811 0.95543 1.01675 1.01356 1.21549 0.95704 0.95167 1.03369 1.20045 0.82876 0.95892 0.90877 1.22890 0.96418 0.97316 0.86250 1.86560 1.78016 1.55798 1.15196 1.22903 0.96695 0.96649 0.86396 1.86534 1.78912 1.55095 1.15334 1.44717 1.02513 1.07634 1.79842 1.17115 0.89016 0.85446 0.89519 1.20252 0.98027 0.91311 1.23010 1.20079 0.92894 0.96088 0.99798 1.19494 0.93778 0.93938 1.16430 1.17933 0.84301 0.94071 1.03120 1.41552 1.04631 1.08053 1.64563 0.77513 1.23118 1.01108 0.78897 1.19801 1.17933 0.88488 0.91111 0.99839 1.18617 0.95622 0.89636 1.40887 0.91574 1.25579 0.94714 1.00566 0.94411 1.69525 1.01429 1.35575 1.39912 0.86204 0.79197 0.82835 0.78091 1.18920 1.20447 1.20441 1.18903 0.91144 0.94476 1.15195 0.92663 0.92695 0.92748 0.90762 0.90584 0.90792 0.93824 0.78222 0.93744 0.91364 0.78185 0.75122 0.87013 0.88180 0.88851 0.79726 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.21 37.16 0.34 -1.35 16 2 C -0.12 -1.82 4.79 -26.73 -0.13 -1.95 16 3 C 0.19 3.07 0.40 -131.82 -0.05 3.01 16 4 C 0.05 0.71 5.18 37.16 0.19 0.90 16 5 O -0.55 -8.61 12.83 -35.23 -0.45 -9.06 16 6 C 0.05 0.73 5.31 37.16 0.20 0.92 16 7 O -0.55 -8.13 12.81 -35.23 -0.45 -8.58 16 8 N -0.72 -14.72 5.01 -45.89 -0.23 -14.95 16 9 C 0.29 6.54 6.25 -83.66 -0.52 6.02 16 10 C -0.30 -5.76 6.83 -39.32 -0.27 -6.03 16 11 C -0.07 -1.28 10.00 -39.60 -0.40 -1.67 16 12 C -0.21 -4.33 10.07 -39.33 -0.40 -4.73 16 13 C 0.12 2.81 7.23 -83.91 -0.61 2.20 16 14 N -0.59 -13.47 5.99 -9.80 -0.06 -13.53 16 15 H 0.39 7.43 8.96 -40.82 -0.37 7.07 16 16 C -0.11 -2.78 10.87 -15.59 -0.17 -2.95 16 17 C 0.03 0.87 6.09 -104.81 -0.64 0.23 16 18 C -0.41 -11.43 9.05 -38.03 -0.34 -11.77 16 19 H 0.07 1.77 5.24 -52.48 -0.28 1.49 16 20 C 0.06 1.51 5.49 -17.34 -0.10 1.41 16 21 N -0.83 -22.33 10.39 55.54 0.58 -21.75 16 22 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.19 -4.75 6.27 -104.76 -0.66 -5.41 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.59 6.44 -51.93 -0.33 0.25 16 29 H 0.05 0.57 6.47 -51.93 -0.34 0.24 16 30 H 0.07 1.21 7.64 -51.93 -0.40 0.81 16 31 H 0.08 1.27 7.67 -51.93 -0.40 0.87 16 32 H 0.07 1.10 4.54 -51.92 -0.24 0.86 16 33 H 0.04 0.49 6.46 -51.93 -0.34 0.16 16 34 H 0.37 4.05 9.12 45.56 0.42 4.46 16 35 H 0.04 0.49 6.52 -51.93 -0.34 0.15 16 36 H 0.07 0.98 4.86 -51.93 -0.25 0.73 16 37 H 0.37 3.65 9.12 45.56 0.42 4.07 16 38 H 0.41 9.32 5.38 -40.82 -0.22 9.11 16 39 H 0.11 1.81 3.38 -52.49 -0.18 1.64 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.19 5.01 5.78 -52.48 -0.30 4.70 16 43 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -32.48 331.08 -7.73 -40.21 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -3.54 Total: 28.61 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.54 Total: -21.16 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.29 Total: -50.23 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.90 Total: -17.64 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.48 -7.73 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167972432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.725 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds