Wall clock time and date at job start Tue Mar 31 2020 09:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 C 1.52995 * 109.47007 * 60.00319 * 3 2 1 5 5 O 1.42905 * 109.47613 * 59.40161 * 4 3 2 6 6 C 1.52996 * 109.47350 * 299.99673 * 3 2 1 7 7 O 1.42893 * 109.47405 * 301.62590 * 6 3 2 8 8 N 1.46499 * 109.46899 * 179.97438 * 3 2 1 9 9 C 1.39410 * 120.00145 * 185.76559 * 8 3 2 10 10 C 1.38725 * 120.22553 * 353.28296 * 9 8 3 11 11 C 1.38448 * 120.15157 * 179.72429 * 10 9 8 12 12 C 1.37988 * 120.70891 * 0.02562 * 11 10 9 13 13 C 1.39154 * 120.13113 * 359.97438 * 12 11 10 14 14 N 1.38148 * 132.74718 * 179.97438 * 13 12 11 15 15 H 0.96996 * 124.69633 * 359.95174 * 14 13 12 16 16 C 1.35660 * 110.60178 * 179.87084 * 14 13 12 17 17 C 1.38957 * 109.25075 * 0.11964 * 16 14 13 18 18 C 1.40910 * 126.93207 * 179.90729 * 17 16 14 19 19 H 1.08004 * 119.99713 * 187.87540 * 18 17 16 20 20 C 1.39674 * 120.00209 * 7.87054 * 18 17 16 21 21 N 1.31081 * 120.00035 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47012 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46952 * 119.99960 * 22 20 18 25 25 H 1.48500 * 109.46843 * 239.99979 * 22 20 18 26 26 C 1.39768 * 120.22747 * 173.00634 * 9 8 3 27 27 H 1.08999 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47245 * 299.99907 * 1 2 3 29 29 H 1.09005 * 109.47173 * 60.00040 * 1 2 3 30 30 H 1.08997 * 109.47245 * 240.00093 * 2 1 3 31 31 H 1.09004 * 109.46749 * 120.00281 * 2 1 3 32 32 H 1.09008 * 109.47350 * 179.40346 * 4 3 2 33 33 H 1.08999 * 109.47247 * 299.39563 * 4 3 2 34 34 H 0.96701 * 113.99720 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.46739 * 61.62954 * 6 3 2 36 36 H 1.09004 * 109.47040 * 181.62239 * 6 3 2 37 37 H 0.96705 * 114.00316 * 179.97438 * 7 6 3 38 38 H 0.97005 * 120.00521 * 5.76935 * 8 3 2 39 39 H 1.07997 * 119.92433 * 359.74874 * 10 9 8 40 40 H 1.08001 * 119.64788 * 180.02562 * 11 10 9 41 41 H 1.08007 * 119.93393 * 179.97438 * 12 11 10 42 42 H 1.08007 * 125.37236 * 180.02562 * 16 14 13 43 43 H 0.96995 * 120.00435 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.9948 1.4820 2.4161 6 6 1.5300 2.1637 -1.2492 7 8 1.9749 1.4685 -2.4157 8 7 3.5049 1.4425 0.0006 9 6 4.2020 2.6437 0.1220 10 6 3.5202 3.8518 0.1026 11 6 4.2134 5.0435 0.2290 12 6 5.5855 5.0486 0.3749 13 6 6.2901 3.8488 0.3971 14 7 7.6332 3.5524 0.5263 15 1 8.3368 4.2120 0.6288 16 6 7.8314 2.2108 0.4916 17 6 6.6081 1.5709 0.3335 18 6 6.3835 0.1823 0.2497 19 1 5.4016 -0.1917 -0.0002 20 6 7.4307 -0.7103 0.4896 21 7 8.6225 -0.2563 0.7922 22 14 7.1330 -2.5510 0.3776 23 1 5.7134 -2.8021 0.0213 24 1 8.0151 -3.1325 -0.6659 25 1 7.4341 -3.1816 1.6880 26 6 5.5918 2.6389 0.2699 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9020 3.1883 1.2547 33 1 0.4401 2.1730 1.2439 34 1 1.7085 1.8849 3.2472 35 1 0.4404 2.1891 -1.2347 36 1 1.9169 3.1827 -1.2638 37 1 1.6875 1.8706 -3.2469 38 1 3.9901 0.6067 -0.0835 39 1 2.4463 3.8626 -0.0110 40 1 3.6744 5.9793 0.2132 41 1 6.1137 5.9857 0.4721 42 1 8.7890 1.7179 0.5725 43 1 9.3497 -0.8761 0.9592 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167972432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:00 Heat of formation + Delta-G solvation = -53.960728 kcal Electronic energy + Delta-G solvation = -26245.685729 eV Core-core repulsion = 22676.537805 eV Total energy + Delta-G solvation = -3569.147925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52068 -40.24803 -37.29214 -37.22794 -35.86214 -35.21910 -33.88483 -31.59187 -30.04596 -29.34795 -28.71193 -26.53743 -26.21966 -24.78939 -22.68976 -22.33724 -21.24674 -20.12327 -19.04473 -18.39831 -18.17041 -17.66854 -17.57579 -16.83283 -16.16679 -16.00944 -15.88913 -15.28701 -15.21676 -14.84321 -14.58711 -14.34436 -14.18557 -14.03007 -13.75068 -13.12921 -13.09895 -13.03969 -12.95399 -12.89253 -12.69075 -12.42906 -12.32619 -12.05778 -11.70571 -11.60309 -11.44810 -11.31156 -11.20215 -10.73161 -10.55702 -10.45347 -9.18195 -8.60311 -8.37302 -7.63349 -5.91777 0.92324 1.16552 1.37197 1.38513 1.50786 2.28276 2.37405 2.65222 3.01980 3.08053 3.27122 3.72831 3.82435 3.98908 4.07084 4.23269 4.40441 4.41323 4.44606 4.48072 4.56368 4.58385 4.69982 4.72539 4.77590 4.92152 5.02654 5.16105 5.17497 5.26025 5.29369 5.31815 5.41577 5.52959 5.66258 5.92327 6.01493 6.10988 6.16630 6.59917 6.83670 6.91783 7.01441 7.02231 7.06521 7.18285 7.31127 7.52487 8.61834 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.006980 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.758616 B = 4010.286012 C = 5659.071095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.177 3.823 4 C 0.052 3.948 5 O -0.581 6.581 6 C 0.057 3.943 7 O -0.581 6.581 8 N -0.724 5.724 9 C 0.278 3.722 10 C -0.291 4.291 11 C -0.054 4.054 12 C -0.228 4.228 13 C 0.111 3.889 14 N -0.587 5.587 15 H 0.407 0.593 16 C -0.126 4.126 17 C -0.006 4.006 18 C -0.443 4.443 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.859 5.859 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.234 4.234 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.390 0.610 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.392 0.608 38 H 0.390 0.610 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.171 0.829 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.636 6.425 -1.414 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.090 3.910 4 C -0.026 4.026 5 O -0.388 6.388 6 C -0.022 4.022 7 O -0.388 6.388 8 N -0.352 5.352 9 C 0.172 3.828 10 C -0.315 4.315 11 C -0.074 4.074 12 C -0.251 4.251 13 C -0.002 4.002 14 N -0.190 5.190 15 H 0.243 0.757 16 C -0.250 4.250 17 C -0.012 4.012 18 C -0.477 4.477 19 H 0.080 0.920 20 C -0.195 4.195 21 N -0.491 5.491 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.243 4.243 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.239 0.761 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.241 0.759 38 H 0.227 0.773 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.139 0.861 42 H 0.188 0.812 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.939 5.520 -1.350 16.922 hybrid contribution 0.805 -0.393 0.099 0.901 sum -15.134 5.127 -1.250 16.028 Atomic orbital electron populations 1.21774 0.92236 1.02783 1.02745 1.21501 0.98447 0.94472 1.01053 1.20533 0.80296 0.96994 0.93209 1.22920 0.98530 0.96227 0.84902 1.86532 1.78832 1.56790 1.16662 1.22876 0.98762 0.95523 0.85016 1.86504 1.79650 1.55980 1.16708 1.44947 1.04533 1.06346 1.79362 1.17431 0.88334 0.87200 0.89845 1.20716 0.99821 0.90198 1.20799 1.20679 0.92383 0.97795 0.96507 1.19882 0.94762 0.93685 1.16787 1.18440 0.84251 0.94975 1.02495 1.41359 1.05316 1.07142 1.65138 0.75723 1.22876 1.00379 0.80579 1.21152 1.18366 0.90070 0.92016 1.00754 1.18860 0.95968 0.90525 1.42337 0.92037 1.26408 0.94362 1.04836 0.93899 1.69623 1.02046 1.36998 1.40397 0.85194 0.78978 0.77383 0.78368 1.18948 1.19466 1.19707 1.19289 0.92871 0.94505 1.17668 0.91925 0.91294 0.91104 0.92866 0.93171 0.91221 0.89818 0.76097 0.89769 0.91747 0.75889 0.77287 0.83528 0.83426 0.86112 0.81197 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.21 71.98 0.66 -2.09 16 2 C -0.12 -3.45 4.79 30.59 0.15 -3.30 16 3 C 0.18 5.35 0.40 3.60 0.00 5.35 16 4 C 0.05 1.33 5.18 71.98 0.37 1.70 16 5 O -0.58 -17.35 12.83 -148.98 -1.91 -19.26 16 6 C 0.06 1.38 5.31 71.98 0.38 1.76 16 7 O -0.58 -15.99 12.81 -148.98 -1.91 -17.89 16 8 N -0.72 -30.15 5.01 -299.09 -1.50 -31.65 16 9 C 0.28 12.35 6.25 38.42 0.24 12.59 16 10 C -0.29 -10.31 6.83 22.44 0.15 -10.16 16 11 C -0.05 -1.80 10.00 22.26 0.22 -1.58 16 12 C -0.23 -8.76 10.07 22.43 0.23 -8.53 16 13 C 0.11 5.27 7.23 38.86 0.28 5.56 16 14 N -0.59 -27.84 5.99 -184.91 -1.11 -28.95 16 15 H 0.41 15.90 8.96 -92.71 -0.83 15.07 16 16 C -0.13 -7.03 10.87 84.27 0.92 -6.11 16 17 C -0.01 -0.38 6.09 -19.99 -0.12 -0.50 16 18 C -0.44 -25.96 9.05 23.27 0.21 -25.75 16 19 H 0.06 3.53 5.24 -2.91 -0.02 3.51 16 20 C 0.01 0.65 5.49 85.15 0.47 1.11 16 21 N -0.86 -48.32 10.39 21.79 0.23 -48.10 16 22 Si 0.98 43.20 29.56 68.60 2.03 45.23 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C -0.23 -12.25 6.27 -19.95 -0.13 -12.37 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.19 6.44 -2.39 -0.02 1.17 16 29 H 0.07 1.19 6.47 -2.38 -0.02 1.17 16 30 H 0.05 1.76 7.64 -2.39 -0.02 1.74 16 31 H 0.05 1.71 7.67 -2.39 -0.02 1.69 16 32 H 0.07 1.81 4.54 -2.38 -0.01 1.80 16 33 H 0.08 1.47 6.46 -2.39 -0.02 1.45 16 34 H 0.39 7.80 9.12 -74.06 -0.68 7.13 16 35 H 0.08 1.40 6.52 -2.39 -0.02 1.38 16 36 H 0.06 1.60 4.86 -2.38 -0.01 1.59 16 37 H 0.39 6.80 9.12 -74.05 -0.68 6.12 16 38 H 0.39 18.80 5.38 -92.70 -0.50 18.30 16 39 H 0.15 4.12 3.38 -2.91 -0.01 4.11 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 42 H 0.17 9.88 5.78 -2.91 -0.02 9.87 16 43 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 Total: -1.00 -75.56 331.08 -1.70 -77.26 By element: Atomic # 1 Polarization: 67.24 SS G_CDS: -1.56 Total: 65.68 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 4.04 Total: -42.31 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -2.38 Total: -108.70 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -3.82 Total: -37.16 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.56 -1.70 -77.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167972432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.295 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds