Wall clock time and date at job start Tue Mar 31 2020 08:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 C 1.52990 * 109.47218 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47336 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47587 * 54.99854 * 5 4 3 7 7 N 1.46502 * 109.46872 * 294.99609 * 5 4 3 8 8 C 1.34775 * 120.00212 * 300.00292 * 7 5 4 9 9 O 1.21277 * 120.00255 * 359.97438 * 8 7 5 10 10 C 1.50694 * 109.47354 * 175.00097 * 5 4 3 11 11 O 1.21284 * 120.00433 * 99.99833 * 10 5 4 12 12 N 1.34784 * 120.00146 * 279.99870 * 10 5 4 13 13 C 1.39934 * 120.00180 * 175.09304 * 12 10 5 14 14 C 1.39289 * 119.94857 * 326.48310 * 13 12 10 15 15 C 1.38485 * 120.43260 * 179.76415 * 14 13 12 16 16 C 1.37683 * 120.31633 * 0.51722 * 15 14 13 17 17 C 1.40745 * 119.88887 * 359.74233 * 16 15 14 18 18 C 1.41404 * 120.21301 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00072 * 151.37192 * 18 17 16 20 20 C 1.39941 * 119.99639 * 331.37391 * 18 17 16 21 21 N 1.30828 * 119.99678 * 166.72954 * 20 18 17 22 22 Si 1.86796 * 120.00312 * 346.72341 * 20 18 17 23 23 H 1.48500 * 109.46901 * 95.30442 * 22 20 18 24 24 H 1.48499 * 109.47137 * 215.30743 * 22 20 18 25 25 H 1.48500 * 109.46983 * 335.30655 * 22 20 18 26 26 C 1.38240 * 119.94541 * 146.76186 * 13 12 10 27 27 H 1.08998 * 109.46872 * 299.99804 * 1 2 3 28 28 H 1.08995 * 109.47375 * 59.99887 * 1 2 3 29 29 H 1.09001 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46872 * 240.00196 * 2 1 3 31 31 H 1.08995 * 109.47375 * 120.00112 * 2 1 3 32 32 H 1.09008 * 109.46936 * 59.99839 * 3 2 1 33 33 H 1.09007 * 109.47347 * 300.00548 * 3 2 1 34 34 H 1.09000 * 109.47377 * 60.00295 * 4 3 2 35 35 H 1.09004 * 109.47071 * 299.99912 * 4 3 2 36 36 H 0.97008 * 119.99642 * 119.99703 * 7 5 4 37 37 H 1.08004 * 119.99998 * 180.02562 * 8 7 5 38 38 H 0.97000 * 119.99261 * 355.08685 * 12 10 5 39 39 H 1.08007 * 119.78458 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.84362 * 180.23478 * 15 14 13 41 41 H 1.08000 * 120.05688 * 179.76214 * 16 15 14 42 42 H 0.97000 * 120.00322 * 179.97438 * 21 20 18 43 43 H 1.08000 * 120.16485 * 359.95692 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4237 0.8423 7 7 3.6919 3.5407 -1.2513 8 6 4.1159 3.0459 -2.4311 9 8 4.8191 2.0582 -2.4569 10 6 5.5818 2.8869 0.1232 11 8 6.2710 3.0404 -0.8629 12 7 6.1593 2.7178 1.3292 13 6 7.5513 2.6166 1.4305 14 6 8.2803 2.0089 0.4109 15 6 9.6587 1.9076 0.4985 16 6 10.3229 2.3977 1.6004 17 6 9.5991 3.0095 2.6410 18 6 10.2744 3.5157 3.7756 19 1 9.8591 4.3479 4.3245 20 6 11.4809 2.9382 4.1870 21 7 12.2351 3.5524 5.0620 22 14 12.0145 1.2906 3.4872 23 1 12.9297 1.5135 2.3392 24 1 12.7181 0.5112 4.5373 25 1 10.8197 0.5373 3.0286 26 6 8.2002 3.1147 2.5448 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8909 35 1 3.9337 0.9286 0.8892 36 1 3.1296 4.3310 -1.2307 37 1 3.8301 3.5296 -3.3535 38 1 5.6099 2.6664 2.1270 39 1 7.7676 1.6178 -0.4555 40 1 10.2148 1.4380 -0.2993 41 1 11.3976 2.3131 1.6661 42 1 13.0712 3.1521 5.3476 43 1 7.6355 3.5827 3.3377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184590379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:51 Heat of formation + Delta-G solvation = -84.498715 kcal Electronic energy + Delta-G solvation = -24625.813128 eV Core-core repulsion = 21055.340977 eV Total energy + Delta-G solvation = -3570.472151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.72896 -40.14152 -38.87726 -37.08103 -36.09522 -35.09142 -35.02760 -32.24822 -31.93970 -30.49231 -27.89395 -27.03277 -24.15907 -23.90188 -22.89852 -22.44279 -21.72271 -20.70159 -19.68524 -19.31596 -18.14866 -17.78824 -17.17024 -16.56209 -16.49189 -16.22237 -15.84304 -15.63663 -15.27726 -14.87570 -14.72462 -14.53563 -14.48051 -14.18259 -14.02541 -13.74289 -13.54184 -13.45877 -12.90291 -12.77663 -12.60329 -12.41325 -12.17372 -12.05000 -11.88504 -11.73842 -11.57071 -11.42666 -11.20417 -11.15569 -10.71515 -10.53764 -9.88079 -9.57512 -8.89916 -8.85066 -6.54120 0.64381 0.75878 1.26885 1.40260 1.48934 1.70043 1.87427 2.12563 2.26021 2.60837 2.62243 3.47806 3.64267 3.87439 3.96368 4.16896 4.20485 4.27202 4.37410 4.46703 4.47979 4.56773 4.57567 4.83765 4.84085 4.88538 4.95737 5.00116 5.02899 5.05065 5.23515 5.33371 5.34960 5.41562 5.51887 5.55300 5.58298 5.69396 5.79632 5.91374 6.19473 6.34042 6.63785 6.68482 6.70263 6.81185 7.30585 7.53359 8.18012 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.003171 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.621723 B = 8827.320703 C = 9224.358293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.127 4.127 5 C 0.141 3.859 6 H 0.151 0.849 7 N -0.712 5.712 8 C 0.487 3.513 9 O -0.579 6.579 10 C 0.487 3.513 11 O -0.538 6.538 12 N -0.663 5.663 13 C 0.180 3.820 14 C -0.231 4.231 15 C -0.073 4.073 16 C -0.259 4.259 17 C 0.088 3.912 18 C -0.476 4.476 19 H 0.063 0.937 20 C 0.048 3.952 21 N -0.850 5.850 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.250 1.250 26 C -0.236 4.236 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.426 0.574 37 H 0.170 0.830 38 H 0.421 0.579 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.294 0.706 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.298 -2.258 -8.251 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.139 4.139 4 C -0.166 4.166 5 C 0.031 3.969 6 H 0.169 0.831 7 N -0.369 5.369 8 C 0.256 3.744 9 O -0.455 6.455 10 C 0.274 3.726 11 O -0.412 6.412 12 N -0.310 5.310 13 C 0.086 3.914 14 C -0.252 4.252 15 C -0.092 4.092 16 C -0.279 4.279 17 C 0.085 3.915 18 C -0.505 4.505 19 H 0.081 0.919 20 C -0.166 4.166 21 N -0.477 5.477 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.173 1.173 26 C -0.258 4.258 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.264 0.736 37 H 0.185 0.815 38 H 0.259 0.741 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.104 0.896 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.174 -2.789 -8.854 24.964 hybrid contribution 0.592 -0.055 0.357 0.694 sum -22.582 -2.844 -8.497 24.295 Atomic orbital electron populations 1.21740 0.94744 1.01807 1.02285 1.21534 0.96696 0.97033 1.01390 1.21494 0.92024 0.97025 1.03341 1.21883 0.97881 0.93694 1.03166 1.20924 0.87747 0.97402 0.90781 0.83139 1.46131 1.53466 1.32682 1.04643 1.23326 0.78126 0.84491 0.88418 1.90718 1.37256 1.29233 1.88285 1.22014 0.92797 0.75531 0.82250 1.90746 1.65742 1.47050 1.37710 1.43497 1.04787 1.72168 1.10521 1.17497 0.83137 0.95853 0.94932 1.20540 0.93914 1.09804 1.00927 1.20757 0.94175 0.97553 0.96702 1.21058 0.98183 1.11791 0.96834 1.17664 0.92144 0.89798 0.91889 1.19437 1.04668 1.15776 1.10644 0.91903 1.26766 0.94384 1.01834 0.93632 1.69679 1.11522 1.38969 1.27499 0.85497 0.79470 0.78536 0.77444 1.19094 1.20641 1.17343 1.20845 0.93572 1.11213 1.00175 0.91804 0.92508 0.92901 0.93684 0.92172 0.89638 0.91288 0.92497 0.90790 0.73577 0.81457 0.74096 0.87884 0.86299 0.88507 0.89570 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.13 -1.76 5.93 30.60 0.18 -1.57 16 3 C -0.10 -1.20 5.10 30.59 0.16 -1.05 16 4 C -0.13 -2.36 4.54 30.59 0.14 -2.22 16 5 C 0.14 2.53 3.01 44.24 0.13 2.67 16 6 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 7 N -0.71 -10.38 4.66 -459.82 -2.14 -12.52 16 8 C 0.49 10.14 11.40 129.79 1.48 11.62 16 9 O -0.58 -19.68 13.03 19.44 0.25 -19.43 16 10 C 0.49 15.08 6.56 87.65 0.57 15.66 16 11 O -0.54 -22.21 11.35 19.42 0.22 -21.99 16 12 N -0.66 -20.86 5.34 -303.65 -1.62 -22.48 16 13 C 0.18 7.66 6.27 38.10 0.24 7.90 16 14 C -0.23 -10.70 8.66 22.58 0.20 -10.50 16 15 C -0.07 -3.43 10.02 22.20 0.22 -3.21 16 16 C -0.26 -13.07 6.92 22.75 0.16 -12.92 16 17 C 0.09 4.61 5.19 -21.31 -0.11 4.50 16 18 C -0.48 -26.78 9.61 23.46 0.23 -26.55 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C 0.05 2.62 5.47 85.25 0.47 3.09 16 21 N -0.85 -46.96 13.93 21.83 0.30 -46.65 16 22 Si 0.97 44.16 24.37 68.60 1.67 45.83 16 23 H -0.26 -11.69 6.77 99.48 0.67 -11.02 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.25 -11.68 6.48 99.48 0.64 -11.04 16 26 C -0.24 -10.90 9.70 22.85 0.22 -10.68 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.76 7.75 -2.38 -0.02 0.74 16 34 H 0.06 1.53 6.05 -2.39 -0.01 1.51 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.43 2.37 8.94 -92.70 -0.83 1.54 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.42 9.55 8.82 -92.71 -0.82 8.73 16 39 H 0.10 4.95 6.40 -2.91 -0.02 4.94 16 40 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.10 4.83 4.20 -2.91 -0.01 4.82 16 42 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 43 H 0.12 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -79.62 349.12 2.98 -76.64 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.70 Total: 24.73 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 4.99 Total: -24.12 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -3.46 Total: -81.65 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: 0.47 Total: -41.42 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.67 Total: 45.83 kcal Total: -79.62 2.98 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184590379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.862 kcal (2) G-P(sol) polarization free energy of solvation -79.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds