Wall clock time and date at job start Tue Mar 31 2020 08:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.52999 * 109.47629 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47339 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46812 * 54.99884 * 5 4 3 7 7 N 1.46506 * 109.47030 * 294.99887 * 5 4 3 8 8 C 1.34776 * 119.99782 * 154.99822 * 7 5 4 9 9 O 1.21554 * 120.00095 * 0.02562 * 8 7 5 10 10 C 1.47887 * 119.99790 * 179.97438 * 8 7 5 11 11 C 1.39913 * 120.02325 * 0.29514 * 10 8 7 12 12 C 1.38334 * 120.35462 * 180.25313 * 11 10 8 13 13 C 1.37752 * 120.41277 * 359.44894 * 12 11 10 14 14 C 1.40755 * 120.03814 * 0.28051 * 13 12 11 15 15 C 1.41437 * 120.17445 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00412 * 24.46106 * 15 14 13 17 17 C 1.39941 * 119.99412 * 204.45998 * 15 14 13 18 18 N 1.30821 * 120.00160 * 17.89989 * 17 15 14 19 19 Si 1.86801 * 119.99666 * 197.90289 * 17 15 14 20 20 H 1.48503 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47397 * 119.99764 * 19 17 15 22 22 H 1.48497 * 109.47005 * 239.99936 * 19 17 15 23 23 C 1.39000 * 120.02177 * 180.02562 * 10 8 7 24 24 C 1.50699 * 109.47241 * 174.99862 * 5 4 3 25 25 N 1.34777 * 119.99766 * 300.00522 * 24 5 4 26 26 O 1.21277 * 120.00070 * 119.99513 * 24 5 4 27 27 H 1.09000 * 109.46745 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46899 * 299.99607 * 1 2 3 29 29 H 1.08999 * 109.47081 * 60.00126 * 1 2 3 30 30 H 1.09001 * 109.47318 * 240.00608 * 2 1 3 31 31 H 1.08993 * 109.47597 * 120.00327 * 2 1 3 32 32 H 1.09003 * 109.46762 * 59.99644 * 3 2 1 33 33 H 1.09007 * 109.46870 * 300.00621 * 3 2 1 34 34 H 1.08999 * 109.47052 * 59.99703 * 4 3 2 35 35 H 1.09003 * 109.46841 * 300.00654 * 4 3 2 36 36 H 0.97001 * 119.99855 * 335.00323 * 7 5 4 37 37 H 1.08001 * 119.82557 * 359.97438 * 11 10 8 38 38 H 1.08005 * 119.79349 * 179.72356 * 12 11 10 39 39 H 1.07995 * 119.98137 * 180.25140 * 13 12 11 40 40 H 0.97006 * 119.99551 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.20149 * 0.04257 * 23 10 8 42 42 H 0.96997 * 120.00562 * 359.97438 * 25 24 5 43 43 H 0.97001 * 119.99695 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 0.8423 7 7 3.6919 3.5408 -1.2513 8 6 3.5650 4.8817 -1.2982 9 8 3.7730 5.5471 -0.3024 10 6 3.1738 5.5437 -2.5615 11 6 2.9293 4.7778 -3.7066 12 6 2.5681 5.3903 -4.8932 13 6 2.4338 6.7597 -4.9585 14 6 2.6702 7.5461 -3.8153 15 6 2.5338 8.9524 -3.8792 16 1 1.8955 9.3997 -4.6268 17 6 3.2259 9.7643 -2.9736 18 7 4.2466 9.2833 -2.3116 19 14 2.6923 11.5350 -2.7101 20 1 1.5209 11.8326 -3.5729 21 1 2.3219 11.7337 -1.2859 22 1 3.8104 12.4466 -3.0626 23 6 3.0433 6.9267 -2.6105 24 6 5.5820 2.8868 0.1232 25 7 6.1702 2.3329 1.2020 26 8 6.2613 3.3865 -0.7483 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 3.5262 3.0098 -2.0460 37 1 3.0275 3.7031 -3.6651 38 1 2.3858 4.7907 -5.7728 39 1 2.1476 7.2302 -5.8874 40 1 4.7265 9.8463 -1.6841 41 1 3.2275 7.5213 -1.7281 42 1 5.6269 1.9335 1.8992 43 1 7.1370 2.3344 1.2814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188688727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:31 Heat of formation + Delta-G solvation = -80.923631 kcal Electronic energy + Delta-G solvation = -24644.039348 eV Core-core repulsion = 21073.722224 eV Total energy + Delta-G solvation = -3570.317124 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12326 -38.53956 -36.98311 -36.31515 -34.02545 -33.71747 -33.55603 -31.07950 -29.73581 -29.36492 -26.94242 -25.22336 -23.08673 -22.61662 -21.19814 -20.93175 -20.17808 -19.60730 -17.77518 -17.58289 -16.79753 -16.07527 -15.87937 -15.26909 -14.93932 -14.73080 -14.47734 -14.27163 -13.81805 -13.74617 -13.46175 -13.23903 -13.05482 -12.79061 -12.55356 -12.43254 -11.86379 -11.61351 -11.41262 -11.38068 -11.13564 -11.05142 -11.03887 -10.75858 -10.68196 -10.45291 -9.98934 -9.98508 -9.65710 -9.63921 -9.17765 -9.01293 -8.67219 -7.57870 -7.46726 -6.74917 -4.36439 2.25374 2.73428 2.85087 3.10810 3.15812 3.18556 3.32623 3.73136 3.95050 3.99488 4.45230 4.65975 4.71241 4.74023 5.02062 5.04004 5.07714 5.26403 5.50152 5.52892 5.63726 5.64975 5.67300 5.76714 5.87824 5.96698 6.07408 6.13483 6.17758 6.32690 6.70313 6.76210 6.81674 7.03245 7.06537 7.25871 7.33149 7.43279 7.74800 7.79797 7.97156 8.11222 8.23423 8.33906 8.55473 8.84959 8.88537 8.97848 10.19553 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003756 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.973326 B = 7453.702798 C = 8251.858778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.120 4.120 5 C 0.130 3.870 6 H 0.113 0.887 7 N -0.713 5.713 8 C 0.573 3.427 9 O -0.545 6.545 10 C -0.124 4.124 11 C -0.215 4.215 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.781 5.781 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.092 4.092 24 C 0.501 3.499 25 N -0.859 5.859 26 O -0.521 6.521 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.284 0.716 41 H 0.134 0.866 42 H 0.398 0.602 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -16.884 7.590 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.159 4.159 5 C 0.020 3.980 6 H 0.130 0.870 7 N -0.367 5.367 8 C 0.364 3.636 9 O -0.423 6.423 10 C -0.127 4.127 11 C -0.236 4.236 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.200 1.200 23 C -0.112 4.112 24 C 0.284 3.716 25 N -0.425 5.425 26 O -0.395 6.395 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.239 0.761 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.151 0.849 42 H 0.226 0.774 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.157 -15.934 7.785 17.865 hybrid contribution 0.159 0.285 0.191 0.378 sum -1.998 -15.649 7.976 17.678 Atomic orbital electron populations 1.21777 0.95786 1.01426 1.02162 1.21518 0.96045 0.96621 1.01856 1.21653 0.93836 0.97022 1.03453 1.21841 0.97064 0.93505 1.03442 1.20772 0.90715 0.95161 0.91332 0.86966 1.45615 1.71607 1.07607 1.11864 1.18825 0.74910 0.80762 0.89084 1.90680 1.50665 1.64064 1.36880 1.19407 1.06789 0.94855 0.91694 1.20327 1.12833 0.96543 0.93856 1.20425 1.00529 0.94717 0.95938 1.21087 1.11390 0.93221 0.97481 1.17596 0.89226 0.93463 0.90098 1.19610 1.24346 0.90867 1.14131 0.90060 1.25973 0.93240 1.01321 0.94106 1.69815 1.12977 1.38282 1.19492 0.86248 0.79724 0.81480 0.79223 1.18340 1.19592 1.19955 1.21632 0.99491 0.91116 0.98958 1.21356 0.91691 0.76960 0.81585 1.43877 1.11250 1.63270 1.24056 1.90793 1.65365 1.43250 1.40087 0.92944 0.92720 0.92471 0.91999 0.92171 0.91463 0.90903 0.90720 0.90242 0.76093 0.89290 0.88927 0.88646 0.90509 0.84884 0.77413 0.77097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -1.07 5.10 -26.73 -0.14 -1.21 16 4 C -0.12 -1.05 4.70 -26.73 -0.13 -1.18 16 5 C 0.13 1.76 2.38 -69.08 -0.16 1.59 16 6 H 0.11 1.57 7.58 -51.93 -0.39 1.17 16 7 N -0.71 -12.18 4.01 -55.86 -0.22 -12.40 16 8 C 0.57 13.02 7.60 -12.31 -0.09 12.93 16 9 O -0.55 -14.05 16.00 5.32 0.09 -13.97 16 10 C -0.12 -3.05 5.87 -105.04 -0.62 -3.67 16 11 C -0.22 -4.69 9.55 -38.92 -0.37 -5.06 16 12 C -0.10 -2.15 10.01 -39.72 -0.40 -2.54 16 13 C -0.21 -5.16 9.78 -38.81 -0.38 -5.54 16 14 C 0.10 2.68 5.57 -106.87 -0.60 2.08 16 15 C -0.46 -12.37 9.05 -37.73 -0.34 -12.71 16 16 H 0.08 2.07 7.91 -52.49 -0.42 1.65 16 17 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 18 N -0.78 -21.41 10.95 55.55 0.61 -20.80 16 19 Si 0.91 19.17 29.60 -169.99 -5.03 14.13 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.09 -2.53 8.24 -38.44 -0.32 -2.85 16 24 C 0.50 7.55 7.46 -10.99 -0.08 7.47 16 25 N -0.86 -8.26 8.73 31.22 0.27 -7.99 16 26 O -0.52 -10.84 17.16 5.56 0.10 -10.74 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.48 7.43 -51.93 -0.39 0.10 16 36 H 0.40 6.11 6.62 -40.82 -0.27 5.84 16 37 H 0.09 1.61 6.38 -52.49 -0.33 1.27 16 38 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.28 7.14 8.30 -40.82 -0.34 6.80 16 41 H 0.13 3.96 5.74 -52.49 -0.30 3.66 16 42 H 0.40 2.35 8.19 -40.82 -0.33 2.02 16 43 H 0.40 3.50 8.93 -40.82 -0.36 3.13 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -34.78 361.98 -8.38 -43.16 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.14 Total: 13.87 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -3.50 Total: -10.72 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.66 Total: -41.20 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.18 Total: -24.71 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.78 -8.38 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.762 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds