Wall clock time and date at job start Tue Mar 31 2020 09:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46798 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00032 * 275.00009 * 5 4 3 7 7 H 1.08007 * 119.99843 * 141.30776 * 6 5 4 8 8 C 1.38811 * 119.99935 * 321.30135 * 6 5 4 9 9 N 1.31613 * 120.00194 * 338.96429 * 8 6 5 10 10 Si 1.86799 * 119.99806 * 158.96193 * 8 6 5 11 11 H 1.48505 * 109.47017 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47033 * 120.00122 * 10 8 6 13 13 H 1.48503 * 109.47101 * 240.00138 * 10 8 6 14 14 S 1.65606 * 119.99762 * 95.00068 * 5 4 3 15 15 O 1.42106 * 104.27444 * 149.70296 * 14 5 4 16 16 O 1.42099 * 104.27494 * 21.84739 * 14 5 4 17 17 C 1.81401 * 104.44876 * 265.77217 * 14 5 4 18 18 C 1.53004 * 109.46979 * 179.97438 * 17 14 5 19 19 C 1.53125 * 109.52117 * 294.68713 * 18 17 14 20 20 C 1.53041 * 109.27278 * 182.44181 * 19 18 17 21 21 N 1.46840 * 109.52546 * 59.17687 * 20 19 18 22 22 C 1.46846 * 111.20146 * 298.25765 * 21 20 19 23 23 C 1.53040 * 109.52260 * 61.74259 * 22 21 20 24 24 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47615 * 300.00866 * 1 2 3 26 26 H 1.09009 * 109.46457 * 60.00299 * 1 2 3 27 27 H 1.08995 * 109.48010 * 239.99470 * 2 1 3 28 28 H 1.09008 * 109.46812 * 119.99291 * 2 1 3 29 29 H 1.08997 * 109.47618 * 59.99136 * 3 2 1 30 30 H 1.08999 * 109.46780 * 299.99443 * 3 2 1 31 31 H 1.09003 * 109.47163 * 59.99771 * 4 3 2 32 32 H 1.08999 * 109.47234 * 299.99530 * 4 3 2 33 33 H 0.96999 * 120.00379 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46801 * 60.00395 * 17 14 5 35 35 H 1.09000 * 109.47489 * 300.00259 * 17 14 5 36 36 H 1.08997 * 109.57285 * 54.84221 * 18 17 14 37 37 H 1.08998 * 109.49902 * 302.37801 * 19 18 17 38 38 H 1.08997 * 109.50170 * 62.50047 * 19 18 17 39 39 H 1.09003 * 109.45975 * 299.16239 * 20 19 18 40 40 H 1.08997 * 109.46022 * 179.19662 * 20 19 18 41 41 H 1.00904 * 110.99960 * 62.35573 * 21 20 19 42 42 H 1.09004 * 109.46305 * 301.72832 * 22 21 20 43 43 H 1.08996 * 109.46360 * 181.75820 * 22 21 20 44 44 H 1.08997 * 109.50256 * 180.88585 * 23 22 21 45 45 H 1.08993 * 109.50259 * 60.76192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1896 3.5030 -1.1817 7 1 3.9327 4.5508 -1.2337 8 6 4.6530 2.8450 -2.3127 9 7 5.3441 1.7318 -2.1896 10 14 4.2955 3.5396 -4.0095 11 1 3.5069 4.7909 -3.8761 12 1 5.5749 3.8330 -4.7039 13 1 3.5208 2.5474 -4.7974 14 16 4.4516 3.5636 1.4285 15 8 5.4820 4.4772 1.0779 16 8 4.6994 2.4880 2.3235 17 6 2.9457 4.4551 1.9061 18 6 3.1844 5.1880 3.2277 19 6 3.4131 4.1665 4.3453 20 6 3.5906 4.9034 5.6748 21 7 2.3919 5.7035 5.9562 22 6 2.1785 6.7227 4.9209 23 6 1.9588 6.0402 3.5688 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8935 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 5.6675 1.2717 -2.9800 34 1 2.1266 3.7461 2.0270 35 1 2.6896 5.1773 1.1308 36 1 4.0605 5.8300 3.1362 37 1 2.5531 3.5000 4.4106 38 1 4.3094 3.5851 4.1289 39 1 4.4589 5.5595 5.6132 40 1 3.7395 4.1783 6.4748 41 1 1.5791 5.1141 6.0564 42 1 3.0535 7.3703 4.8628 43 1 1.3018 7.3190 5.1734 44 1 1.8161 6.7973 2.7979 45 1 1.0760 5.4031 3.6220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239101127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:54 Heat of formation + Delta-G solvation = -91.783673 kcal Electronic energy + Delta-G solvation = -24790.495662 eV Core-core repulsion = 21355.151562 eV Total energy + Delta-G solvation = -3435.344099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -38.99979 -36.39745 -35.92709 -34.77165 -33.83892 -33.45594 -31.30840 -30.89360 -28.14150 -27.35055 -24.63309 -23.00558 -22.66891 -22.12426 -20.50351 -20.17706 -18.40958 -17.22932 -16.37948 -16.02190 -15.67773 -15.06008 -14.73902 -14.70656 -14.53231 -14.30191 -14.13237 -13.51028 -13.37472 -13.21286 -12.75021 -12.44762 -12.26733 -12.25579 -11.76360 -11.55539 -11.45338 -11.36898 -11.32809 -11.22965 -11.09393 -10.92976 -10.88264 -10.65320 -10.59183 -10.43784 -10.42938 -10.28714 -10.04798 -9.78515 -9.63365 -8.96306 -8.45933 -7.65091 -6.24408 -3.96932 1.32351 3.18837 3.27581 3.30482 3.90843 4.20504 4.35508 4.56508 4.68210 4.77552 4.87718 5.03336 5.07154 5.13555 5.32632 5.33269 5.40262 5.44090 5.45698 5.58883 5.63927 5.68483 5.77612 5.86249 5.89354 5.96226 5.99526 6.09010 6.17420 6.18795 6.23119 6.29313 6.34813 6.43685 6.62118 6.71950 6.89630 6.90620 7.25767 7.31587 7.42022 7.79314 8.42159 9.03726 9.41645 10.78515 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.005218 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.242145 B = 5364.345389 C = 6192.762765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.134 4.134 4 C 0.119 3.881 5 N -0.845 5.845 6 C -0.290 4.290 7 H 0.085 0.915 8 C 0.043 3.957 9 N -0.856 5.856 10 Si 0.911 3.089 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.281 1.281 14 S 2.558 3.442 15 O -0.967 6.967 16 O -0.991 6.991 17 C -0.629 4.629 18 C -0.073 4.073 19 C -0.181 4.181 20 C 0.057 3.943 21 N -0.687 5.687 22 C 0.054 3.946 23 C -0.144 4.144 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.266 0.734 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.339 0.661 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 2.840 8.575 13.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.173 4.173 4 C -0.008 4.008 5 N -0.675 5.675 6 C -0.425 4.425 7 H 0.103 0.897 8 C -0.165 4.165 9 N -0.494 5.494 10 Si 0.738 3.262 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.206 1.206 14 S 2.658 3.342 15 O -0.957 6.957 16 O -0.981 6.981 17 C -0.754 4.754 18 C -0.093 4.093 19 C -0.220 4.220 20 C -0.072 4.072 21 N -0.315 5.315 22 C -0.076 4.076 23 C -0.184 4.184 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.357 3.149 9.488 13.030 hybrid contribution -1.198 -0.108 -1.933 2.277 sum -9.555 3.041 7.555 12.555 Atomic orbital electron populations 1.21770 0.96722 1.00748 1.01390 1.21466 0.94874 0.97853 1.01902 1.22079 0.98648 0.95435 1.01178 1.21305 0.90526 0.84497 1.04468 1.52514 1.77110 1.20397 1.17487 1.18989 1.41973 0.95907 0.85662 0.89699 1.25372 0.94336 0.96852 0.99944 1.70003 1.31348 1.18135 1.29959 0.86134 0.78369 0.79092 0.82621 1.19291 1.20743 1.20646 1.07331 0.76387 0.75232 0.75297 1.93468 1.52221 1.67707 1.82311 1.93407 1.84379 1.52554 1.67752 1.30812 1.25376 1.13795 1.05454 1.20857 0.99596 0.96779 0.92083 1.22735 1.04568 0.98454 0.96228 1.22026 0.93606 0.96235 0.95375 1.60700 1.06736 1.18033 1.46042 1.22070 1.02126 0.94632 0.88774 1.22270 0.97578 0.99564 0.99004 0.93401 0.93265 0.92952 0.91914 0.92355 0.94029 0.91422 0.87421 0.92045 0.92388 0.86136 0.85621 0.90234 0.91056 0.89170 0.90701 0.90279 0.84351 0.90769 0.90682 0.91090 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.42 5.51 -26.73 -0.15 -2.56 16 4 C 0.12 2.65 5.26 -4.04 -0.02 2.63 16 5 N -0.84 -20.26 2.74 -59.90 -0.16 -20.42 16 6 C -0.29 -7.44 8.80 -15.06 -0.13 -7.57 16 7 H 0.09 2.10 7.91 -52.48 -0.42 1.68 16 8 C 0.04 1.10 5.00 -17.43 -0.09 1.02 16 9 N -0.86 -23.17 11.46 55.49 0.64 -22.53 16 10 Si 0.91 19.90 29.60 -169.99 -5.03 14.87 16 11 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 S 2.56 56.88 5.04 -107.50 -0.54 56.34 16 15 O -0.97 -25.20 17.30 -57.54 -1.00 -26.20 16 16 O -0.99 -23.13 14.25 -57.54 -0.82 -23.95 16 17 C -0.63 -10.41 5.62 37.16 0.21 -10.20 16 18 C -0.07 -1.07 2.25 -90.49 -0.20 -1.28 16 19 C -0.18 -2.56 4.98 -26.65 -0.13 -2.69 16 20 C 0.06 0.68 6.55 -3.84 -0.03 0.66 16 21 N -0.69 -7.45 6.87 -113.82 -0.78 -8.23 16 22 C 0.05 0.56 6.55 -3.83 -0.03 0.54 16 23 C -0.14 -1.68 5.36 -26.65 -0.14 -1.82 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.04 0.69 7.27 -51.93 -0.38 0.31 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 2.64 5.56 -51.93 -0.29 2.35 16 32 H 0.06 1.37 6.77 -51.93 -0.35 1.02 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.12 1.81 7.27 -51.92 -0.38 1.43 16 35 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.49 5.79 -51.93 -0.30 1.19 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.34 3.26 8.86 -39.29 -0.35 2.91 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -30.87 360.20 -10.71 -41.57 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.94 Total: 7.99 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -0.50 Total: -24.86 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.31 Total: -51.19 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.82 Total: -50.15 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.54 Total: 56.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.87 -10.71 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239101127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.210 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds