Wall clock time and date at job start Tue Mar 31 2020 09:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47051 * 2 1 4 4 C 1.53005 * 109.46927 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46798 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00032 * 275.00009 * 5 4 3 7 7 H 1.08007 * 119.99843 * 141.30776 * 6 5 4 8 8 C 1.38811 * 119.99935 * 321.30135 * 6 5 4 9 9 N 1.31613 * 120.00194 * 338.96429 * 8 6 5 10 10 Si 1.86799 * 119.99806 * 158.96193 * 8 6 5 11 11 H 1.48505 * 109.47017 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47033 * 120.00122 * 10 8 6 13 13 H 1.48503 * 109.47101 * 240.00138 * 10 8 6 14 14 S 1.65606 * 119.99762 * 95.00068 * 5 4 3 15 15 O 1.42106 * 104.27444 * 149.70296 * 14 5 4 16 16 O 1.42099 * 104.27494 * 21.84739 * 14 5 4 17 17 C 1.81401 * 104.44876 * 265.77217 * 14 5 4 18 18 C 1.53004 * 109.46979 * 179.97438 * 17 14 5 19 19 C 1.53125 * 109.52117 * 294.68713 * 18 17 14 20 20 C 1.53041 * 109.27278 * 182.44181 * 19 18 17 21 21 N 1.46840 * 109.52546 * 59.17687 * 20 19 18 22 22 C 1.46846 * 111.20146 * 298.25765 * 21 20 19 23 23 C 1.53040 * 109.52260 * 61.74259 * 22 21 20 24 24 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47615 * 300.00866 * 1 2 3 26 26 H 1.09009 * 109.46457 * 60.00299 * 1 2 3 27 27 H 1.08995 * 109.48010 * 239.99470 * 2 1 3 28 28 H 1.09008 * 109.46812 * 119.99291 * 2 1 3 29 29 H 1.08997 * 109.47618 * 59.99136 * 3 2 1 30 30 H 1.08999 * 109.46780 * 299.99443 * 3 2 1 31 31 H 1.09003 * 109.47163 * 59.99771 * 4 3 2 32 32 H 1.08999 * 109.47234 * 299.99530 * 4 3 2 33 33 H 0.96999 * 120.00379 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46801 * 60.00395 * 17 14 5 35 35 H 1.09000 * 109.47489 * 300.00259 * 17 14 5 36 36 H 1.08997 * 109.57285 * 54.84221 * 18 17 14 37 37 H 1.08998 * 109.49902 * 302.37801 * 19 18 17 38 38 H 1.08997 * 109.50170 * 62.50047 * 19 18 17 39 39 H 1.09003 * 109.45975 * 299.16239 * 20 19 18 40 40 H 1.08997 * 109.46022 * 179.19662 * 20 19 18 41 41 H 1.00904 * 110.99960 * 62.35573 * 21 20 19 42 42 H 1.09004 * 109.46305 * 301.72832 * 22 21 20 43 43 H 1.08996 * 109.46360 * 181.75820 * 22 21 20 44 44 H 1.08997 * 109.50256 * 180.88585 * 23 22 21 45 45 H 1.08993 * 109.50259 * 60.76192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1896 3.5030 -1.1817 7 1 3.9327 4.5508 -1.2337 8 6 4.6530 2.8450 -2.3127 9 7 5.3441 1.7318 -2.1896 10 14 4.2955 3.5396 -4.0095 11 1 3.5069 4.7909 -3.8761 12 1 5.5749 3.8330 -4.7039 13 1 3.5208 2.5474 -4.7974 14 16 4.4516 3.5636 1.4285 15 8 5.4820 4.4772 1.0779 16 8 4.6994 2.4880 2.3235 17 6 2.9457 4.4551 1.9061 18 6 3.1844 5.1880 3.2277 19 6 3.4131 4.1665 4.3453 20 6 3.5906 4.9034 5.6748 21 7 2.3919 5.7035 5.9562 22 6 2.1785 6.7227 4.9209 23 6 1.9588 6.0402 3.5688 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 1.8935 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9289 0.8909 33 1 5.6675 1.2717 -2.9800 34 1 2.1266 3.7461 2.0270 35 1 2.6896 5.1773 1.1308 36 1 4.0605 5.8300 3.1362 37 1 2.5531 3.5000 4.4106 38 1 4.3094 3.5851 4.1289 39 1 4.4589 5.5595 5.6132 40 1 3.7395 4.1783 6.4748 41 1 1.5791 5.1141 6.0564 42 1 3.0535 7.3703 4.8628 43 1 1.3018 7.3190 5.1734 44 1 1.8161 6.7973 2.7979 45 1 1.0760 5.4031 3.6220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239101127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:52 Heat of formation + Delta-G solvation = -113.437380 kcal Electronic energy + Delta-G solvation = -24791.434637 eV Core-core repulsion = 21355.151562 eV Total energy + Delta-G solvation = -3436.283075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -39.99910 -38.11364 -37.78591 -36.64671 -35.30528 -34.57622 -33.15859 -31.83270 -29.63747 -28.56887 -26.44472 -24.02772 -23.93143 -23.35920 -21.82784 -21.29702 -20.24359 -19.01220 -18.15256 -17.37544 -17.08666 -16.71693 -16.28827 -15.99115 -15.63897 -15.52042 -15.33996 -15.10107 -14.77708 -14.39789 -13.94708 -13.87277 -13.73691 -13.34248 -13.16691 -13.06788 -12.93066 -12.86738 -12.84234 -12.76968 -12.60694 -12.49671 -12.20738 -12.11422 -11.94429 -11.87977 -11.77462 -11.61278 -11.55862 -11.29513 -11.13811 -10.78031 -9.53898 -9.34724 -8.17217 -5.95914 -0.39331 1.45667 1.47873 1.59822 2.15998 2.54074 2.96504 3.20274 3.34951 3.37877 3.58034 3.68002 3.75307 4.09185 4.12573 4.21216 4.24214 4.31833 4.37386 4.41141 4.46024 4.56759 4.59723 4.73055 4.80487 4.91388 4.92588 4.93773 4.98830 5.01289 5.05249 5.07735 5.12148 5.27011 5.28923 5.34880 5.46800 5.54075 5.66919 5.95820 6.02404 6.49416 6.50301 7.11547 7.48102 8.85874 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.005218 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.242145 B = 5364.345389 C = 6192.762765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.116 3.884 5 N -0.860 5.860 6 C -0.309 4.309 7 H 0.090 0.910 8 C -0.006 4.006 9 N -0.897 5.897 10 Si 0.973 3.027 11 H -0.254 1.254 12 H -0.288 1.288 13 H -0.273 1.273 14 S 2.550 3.450 15 O -1.017 7.017 16 O -1.012 7.012 17 C -0.592 4.592 18 C -0.081 4.081 19 C -0.183 4.183 20 C 0.061 3.939 21 N -0.685 5.685 22 C 0.054 3.946 23 C -0.137 4.137 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.350 0.650 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 4.068 9.513 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.011 4.011 5 N -0.690 5.690 6 C -0.443 4.443 7 H 0.107 0.893 8 C -0.210 4.210 9 N -0.537 5.537 10 Si 0.797 3.203 11 H -0.178 1.178 12 H -0.214 1.214 13 H -0.199 1.199 14 S 2.656 3.344 15 O -1.007 7.007 16 O -1.002 7.002 17 C -0.724 4.724 18 C -0.101 4.101 19 C -0.222 4.222 20 C -0.069 4.069 21 N -0.314 5.314 22 C -0.075 4.075 23 C -0.177 4.177 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.168 0.832 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.569 4.335 10.388 16.142 hybrid contribution -0.185 -0.462 -2.066 2.125 sum -11.754 3.873 8.322 14.914 Atomic orbital electron populations 1.21720 0.94134 1.02162 1.02031 1.21466 0.97080 0.95831 1.01678 1.21960 0.95205 0.97502 1.01648 1.21291 0.93493 0.83724 1.02547 1.52632 1.77724 1.20977 1.17708 1.19274 1.42109 0.96236 0.86673 0.89279 1.26216 0.94086 0.97200 1.03476 1.70125 1.32933 1.19778 1.30815 0.85192 0.77946 0.79046 0.78124 1.17781 1.21430 1.19862 1.07017 0.77921 0.74915 0.74591 1.93407 1.56003 1.68313 1.83012 1.93381 1.85695 1.53700 1.67453 1.30442 1.20974 1.13830 1.07184 1.21017 1.01112 0.97093 0.90851 1.22759 1.03572 0.98474 0.97418 1.21983 0.94149 0.96338 0.94404 1.60692 1.06702 1.18007 1.45997 1.22134 1.03026 0.94491 0.87895 1.22261 0.95998 0.99425 1.00011 0.91677 0.92106 0.92806 0.92897 0.92001 0.92195 0.92096 0.90128 0.93169 0.92448 0.83584 0.84014 0.91370 0.89914 0.92251 0.91304 0.89139 0.83193 0.91295 0.88272 0.90113 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.91 71.98 0.71 -2.55 16 2 C -0.12 -3.62 5.93 30.60 0.18 -3.43 16 3 C -0.12 -4.37 5.51 30.60 0.17 -4.20 16 4 C 0.12 5.32 5.26 86.38 0.45 5.78 16 5 N -0.86 -42.17 2.74 -343.44 -0.94 -43.11 16 6 C -0.31 -16.14 8.80 84.03 0.74 -15.40 16 7 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 8 C -0.01 -0.32 5.00 84.86 0.42 0.11 16 9 N -0.90 -50.54 11.46 21.65 0.25 -50.29 16 10 Si 0.97 41.25 29.60 68.60 2.03 43.28 16 11 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 12 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 14 S 2.55 115.48 5.04 -56.49 -0.28 115.19 16 15 O -1.02 -54.95 17.30 -127.65 -2.21 -57.15 16 16 O -1.01 -48.66 14.25 -127.65 -1.82 -50.48 16 17 C -0.59 -18.39 5.62 71.98 0.40 -17.98 16 18 C -0.08 -2.19 2.25 -10.71 -0.02 -2.21 16 19 C -0.18 -4.90 4.98 30.65 0.15 -4.75 16 20 C 0.06 1.34 6.55 86.33 0.57 1.91 16 21 N -0.69 -12.64 6.87 -514.01 -3.53 -16.17 16 22 C 0.05 0.94 6.55 86.33 0.57 1.50 16 23 C -0.14 -2.65 5.36 30.65 0.16 -2.49 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.06 1.86 7.27 -2.39 -0.02 1.84 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 4.15 5.56 -2.39 -0.01 4.13 16 32 H 0.05 2.33 6.77 -2.39 -0.02 2.32 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.15 3.88 7.27 -2.39 -0.02 3.86 16 35 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 1.97 5.79 -2.39 -0.01 1.96 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.35 5.36 8.86 -89.69 -0.79 4.57 16 42 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -69.77 360.20 -1.83 -71.60 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.16 Total: 30.85 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 4.51 Total: -43.73 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.22 Total: -109.57 kcal Atomic # 8 Polarization: -103.61 SS G_CDS: -4.03 Total: -107.64 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 115.48 SS G_CDS: -0.28 Total: 115.19 kcal Total: -69.77 -1.83 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239101127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.833 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds