Wall clock time and date at job start Tue Mar 31 2020 09:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47488 * 2 1 4 4 C 1.52998 * 109.47488 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99433 * 269.99396 * 5 4 3 7 7 H 1.08000 * 119.99439 * 141.91244 * 6 5 4 8 8 C 1.38808 * 120.00376 * 321.91905 * 6 5 4 9 9 N 1.31620 * 119.99832 * 339.15266 * 8 6 5 10 10 Si 1.86803 * 120.00197 * 159.15955 * 8 6 5 11 11 H 1.48504 * 109.47025 * 59.99579 * 10 8 6 12 12 H 1.48497 * 109.47053 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46901 * 299.99731 * 10 8 6 14 14 C 1.46492 * 120.00230 * 89.99595 * 5 4 3 15 15 C 1.53043 * 109.46106 * 125.05765 * 14 5 4 16 16 C 1.53191 * 109.31530 * 181.38675 * 15 14 5 17 17 N 1.46929 * 108.77485 * 305.36524 * 16 15 14 18 18 S 1.65598 * 120.63170 * 233.33595 * 17 16 15 19 19 C 1.81403 * 104.45148 * 89.99834 * 18 17 16 20 20 O 1.42102 * 104.27562 * 206.06857 * 18 17 16 21 21 O 1.42099 * 104.27439 * 333.92653 * 18 17 16 22 22 C 1.46932 * 118.73647 * 53.60591 * 17 16 15 23 23 C 1.53044 * 109.46283 * 245.12604 * 14 5 4 24 24 H 1.09002 * 109.46833 * 60.00077 * 1 2 3 25 25 H 1.08995 * 109.47724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47282 * 300.01014 * 1 2 3 27 27 H 1.08995 * 109.47061 * 239.99317 * 2 1 3 28 28 H 1.09002 * 109.46833 * 119.99923 * 2 1 3 29 29 H 1.09002 * 109.47687 * 59.99234 * 3 2 1 30 30 H 1.09002 * 109.47021 * 299.99808 * 3 2 1 31 31 H 1.08995 * 109.47061 * 59.99317 * 4 3 2 32 32 H 1.09002 * 109.46833 * 299.99923 * 4 3 2 33 33 H 0.97001 * 120.00048 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.45941 * 5.08787 * 14 5 4 35 35 H 1.09001 * 109.49353 * 61.43278 * 15 14 5 36 36 H 1.09001 * 109.52013 * 301.35291 * 15 14 5 37 37 H 1.08998 * 109.58708 * 185.58138 * 16 15 14 38 38 H 1.09004 * 109.70443 * 65.21923 * 16 15 14 39 39 H 1.08996 * 109.46879 * 59.99783 * 19 18 17 40 40 H 1.09002 * 109.46742 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.46634 * 300.00082 * 19 18 17 42 42 H 1.09001 * 109.58366 * 66.18476 * 22 17 16 43 43 H 1.08998 * 109.58568 * 186.60298 * 22 17 16 44 44 H 1.09004 * 109.49350 * 298.56923 * 23 14 5 45 45 H 1.09000 * 109.49596 * 58.66315 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2873 3.4683 -1.1862 7 1 4.0459 4.5161 -1.2866 8 6 4.8293 2.7750 -2.2597 9 7 5.4941 1.6579 -2.0535 10 14 4.6154 3.4274 -3.9970 11 1 5.2253 4.7778 -4.0971 12 1 5.2831 2.5108 -4.9557 13 1 3.1682 3.5127 -4.3189 14 6 4.3020 3.5150 1.2683 15 6 5.7400 4.0383 1.2958 16 6 6.0018 4.7303 2.6372 17 7 4.9790 5.7649 2.8432 18 16 5.4146 7.3261 3.1829 19 6 5.5589 8.1196 1.5580 20 8 4.3047 7.8518 3.8978 21 8 6.6913 7.2082 3.7954 22 6 3.5624 5.3868 2.7478 23 6 3.3280 4.6875 1.4053 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9562 -0.8900 31 1 3.9337 0.9283 -0.8890 32 1 3.9329 0.9287 0.8909 33 1 5.8733 1.1736 -2.8036 34 1 4.1526 2.8205 2.0950 35 1 5.8829 4.7518 0.4843 36 1 6.4329 3.2057 1.1746 37 1 6.9897 5.1906 2.6242 38 1 5.9497 3.9994 3.4442 39 1 4.6002 8.0677 1.0420 40 1 5.8463 9.1631 1.6876 41 1 6.3173 7.6047 0.9684 42 1 3.3098 4.7081 3.5625 43 1 2.9409 6.2802 2.8079 44 1 3.4937 5.3949 0.5926 45 1 2.3039 4.3166 1.3622 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257240761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:33 Heat of formation + Delta-G solvation = -65.575960 kcal Electronic energy + Delta-G solvation = -24685.771507 eV Core-core repulsion = 21251.563859 eV Total energy + Delta-G solvation = -3434.207648 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.36181 -37.08861 -35.95575 -35.79352 -33.84223 -31.86833 -30.62553 -29.95825 -29.41620 -27.56946 -24.66695 -23.36796 -22.78134 -21.18710 -20.07293 -19.77985 -18.64977 -17.64213 -16.36190 -15.99514 -15.98589 -15.17997 -14.57513 -14.33691 -14.13014 -13.90288 -13.59890 -13.53089 -13.28347 -13.20524 -13.02146 -12.67720 -12.33021 -12.28487 -12.04580 -12.00745 -11.66017 -11.53499 -11.31781 -11.08509 -11.03560 -10.90148 -10.72422 -10.67230 -10.53014 -10.35108 -10.21388 -9.97800 -9.92972 -9.49696 -9.38164 -8.71135 -8.48124 -6.55481 -5.79852 -3.39058 0.34294 2.71866 3.31483 3.38858 3.40760 3.91941 4.20167 4.43087 4.71887 4.95607 4.99646 5.14717 5.29413 5.43995 5.50375 5.57398 5.63628 5.70060 5.71491 5.75591 5.87424 5.94547 6.09683 6.13569 6.16965 6.20430 6.27000 6.41025 6.45944 6.51454 6.59409 6.61735 6.80125 6.82197 6.89969 6.90893 7.12746 7.21976 7.28413 7.73158 7.80775 8.51305 9.18688 9.81310 10.40238 11.19016 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.004862 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.476620 B = 5757.258979 C = 6898.623619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.148 3.852 5 N -0.580 5.580 6 C -0.253 4.253 7 H 0.056 0.944 8 C 0.015 3.985 9 N -0.885 5.885 10 Si 0.891 3.109 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.179 3.821 15 C -0.133 4.133 16 C 0.122 3.878 17 N -0.994 5.994 18 S 2.612 3.388 19 C -0.674 4.674 20 O -0.964 6.964 21 O -0.962 6.962 22 C 0.125 3.875 23 C -0.144 4.144 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.019 0.981 33 H 0.254 0.746 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 5.278 7.002 9.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.022 3.978 5 N -0.299 5.299 6 C -0.383 4.383 7 H 0.074 0.926 8 C -0.186 4.186 9 N -0.528 5.528 10 Si 0.721 3.279 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.072 3.928 15 C -0.174 4.174 16 C -0.003 4.003 17 N -0.833 5.833 18 S 2.705 3.295 19 C -0.823 4.823 20 O -0.954 6.954 21 O -0.953 6.953 22 C -0.001 4.001 23 C -0.185 4.185 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.770 5.512 7.728 9.889 hybrid contribution -0.170 0.306 -1.909 1.940 sum -2.941 5.818 5.820 8.739 Atomic orbital electron populations 1.21769 0.97072 1.00416 1.01297 1.21478 0.94594 0.98716 1.01212 1.22192 1.00448 0.94065 1.00577 1.20950 0.89234 0.86443 1.01223 1.43858 1.74313 1.11418 1.00332 1.18799 1.35674 0.95189 0.88647 0.92594 1.25143 0.96590 0.98011 0.98814 1.69975 1.34489 1.18137 1.30159 0.86576 0.77955 0.78230 0.85177 1.20928 1.21701 1.21004 1.20260 0.91293 0.91920 0.89365 1.22273 0.99701 1.00642 0.94754 1.21564 0.89559 0.90228 0.98961 1.57605 1.13422 1.24647 1.87593 1.04754 0.73924 0.73784 0.77080 1.30588 1.12062 1.13700 1.25964 1.93577 1.53212 1.79219 1.69420 1.93582 1.42715 1.85283 1.73670 1.21470 0.79434 1.00239 0.98921 1.22446 1.00884 0.99834 0.95338 0.93123 0.93726 0.93319 0.92441 0.92961 0.94127 0.92567 0.89046 0.96219 0.93594 0.93418 0.91229 0.90918 0.90087 0.91569 0.85338 0.86075 0.85164 0.91492 0.90127 0.91652 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.94 5.93 -26.74 -0.16 -2.10 16 3 C -0.13 -2.48 5.54 -26.74 -0.15 -2.62 16 4 C 0.15 3.20 5.28 -4.04 -0.02 3.17 16 5 N -0.58 -12.84 2.36 -165.62 -0.39 -13.24 16 6 C -0.25 -6.23 8.09 -15.06 -0.12 -6.35 16 7 H 0.06 1.38 7.11 -52.49 -0.37 1.01 16 8 C 0.01 0.38 4.96 -17.43 -0.09 0.30 16 9 N -0.89 -23.95 11.47 55.49 0.64 -23.32 16 10 Si 0.89 20.57 29.60 -169.99 -5.03 15.54 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.18 3.29 2.60 -67.89 -0.18 3.12 16 15 C -0.13 -2.32 5.22 -26.61 -0.14 -2.46 16 16 C 0.12 1.74 6.31 -3.71 -0.02 1.72 16 17 N -0.99 -13.45 3.22 -113.52 -0.37 -13.82 16 18 S 2.61 33.30 6.05 -107.50 -0.65 32.65 16 19 C -0.67 -6.70 10.99 101.05 1.11 -5.59 16 20 O -0.96 -14.62 16.72 -57.54 -0.96 -15.58 16 21 O -0.96 -14.87 16.73 -57.54 -0.96 -15.83 16 22 C 0.13 1.68 6.31 -3.71 -0.02 1.66 16 23 C -0.14 -2.29 5.38 -26.61 -0.14 -2.43 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 2.29 5.53 -51.93 -0.29 2.00 16 32 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.05 0.86 7.77 -51.93 -0.40 0.45 16 35 H 0.07 1.30 7.61 -51.93 -0.40 0.91 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.08 7.10 -51.93 -0.37 0.71 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.12 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.99 7.10 -51.93 -0.37 0.62 16 44 H 0.06 1.10 7.25 -51.93 -0.38 0.72 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -30.17 363.66 -9.85 -40.02 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.04 Total: 1.34 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 0.44 Total: -13.24 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.12 Total: -50.37 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.92 Total: -31.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -0.65 Total: 32.65 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.17 -9.85 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257240761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.559 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds