Wall clock time and date at job start Tue Mar 31 2020 09:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47488 * 2 1 4 4 C 1.52998 * 109.47488 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99433 * 269.99396 * 5 4 3 7 7 H 1.08000 * 119.99439 * 141.91244 * 6 5 4 8 8 C 1.38808 * 120.00376 * 321.91905 * 6 5 4 9 9 N 1.31620 * 119.99832 * 339.15266 * 8 6 5 10 10 Si 1.86803 * 120.00197 * 159.15955 * 8 6 5 11 11 H 1.48504 * 109.47025 * 59.99579 * 10 8 6 12 12 H 1.48497 * 109.47053 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46901 * 299.99731 * 10 8 6 14 14 C 1.46492 * 120.00230 * 89.99595 * 5 4 3 15 15 C 1.53043 * 109.46106 * 125.05765 * 14 5 4 16 16 C 1.53191 * 109.31530 * 181.38675 * 15 14 5 17 17 N 1.46929 * 108.77485 * 305.36524 * 16 15 14 18 18 S 1.65598 * 120.63170 * 233.33595 * 17 16 15 19 19 C 1.81403 * 104.45148 * 89.99834 * 18 17 16 20 20 O 1.42102 * 104.27562 * 206.06857 * 18 17 16 21 21 O 1.42099 * 104.27439 * 333.92653 * 18 17 16 22 22 C 1.46932 * 118.73647 * 53.60591 * 17 16 15 23 23 C 1.53044 * 109.46283 * 245.12604 * 14 5 4 24 24 H 1.09002 * 109.46833 * 60.00077 * 1 2 3 25 25 H 1.08995 * 109.47724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47282 * 300.01014 * 1 2 3 27 27 H 1.08995 * 109.47061 * 239.99317 * 2 1 3 28 28 H 1.09002 * 109.46833 * 119.99923 * 2 1 3 29 29 H 1.09002 * 109.47687 * 59.99234 * 3 2 1 30 30 H 1.09002 * 109.47021 * 299.99808 * 3 2 1 31 31 H 1.08995 * 109.47061 * 59.99317 * 4 3 2 32 32 H 1.09002 * 109.46833 * 299.99923 * 4 3 2 33 33 H 0.97001 * 120.00048 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.45941 * 5.08787 * 14 5 4 35 35 H 1.09001 * 109.49353 * 61.43278 * 15 14 5 36 36 H 1.09001 * 109.52013 * 301.35291 * 15 14 5 37 37 H 1.08998 * 109.58708 * 185.58138 * 16 15 14 38 38 H 1.09004 * 109.70443 * 65.21923 * 16 15 14 39 39 H 1.08996 * 109.46879 * 59.99783 * 19 18 17 40 40 H 1.09002 * 109.46742 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.46634 * 300.00082 * 19 18 17 42 42 H 1.09001 * 109.58366 * 66.18476 * 22 17 16 43 43 H 1.08998 * 109.58568 * 186.60298 * 22 17 16 44 44 H 1.09004 * 109.49350 * 298.56923 * 23 14 5 45 45 H 1.09000 * 109.49596 * 58.66315 * 23 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2873 3.4683 -1.1862 7 1 4.0459 4.5161 -1.2866 8 6 4.8293 2.7750 -2.2597 9 7 5.4941 1.6579 -2.0535 10 14 4.6154 3.4274 -3.9970 11 1 5.2253 4.7778 -4.0971 12 1 5.2831 2.5108 -4.9557 13 1 3.1682 3.5127 -4.3189 14 6 4.3020 3.5150 1.2683 15 6 5.7400 4.0383 1.2958 16 6 6.0018 4.7303 2.6372 17 7 4.9790 5.7649 2.8432 18 16 5.4146 7.3261 3.1829 19 6 5.5589 8.1196 1.5580 20 8 4.3047 7.8518 3.8978 21 8 6.6913 7.2082 3.7954 22 6 3.5624 5.3868 2.7478 23 6 3.3280 4.6875 1.4053 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9562 -0.8900 31 1 3.9337 0.9283 -0.8890 32 1 3.9329 0.9287 0.8909 33 1 5.8733 1.1736 -2.8036 34 1 4.1526 2.8205 2.0950 35 1 5.8829 4.7518 0.4843 36 1 6.4329 3.2057 1.1746 37 1 6.9897 5.1906 2.6242 38 1 5.9497 3.9994 3.4442 39 1 4.6002 8.0677 1.0420 40 1 5.8463 9.1631 1.6876 41 1 6.3173 7.6047 0.9684 42 1 3.3098 4.7081 3.5625 43 1 2.9409 6.2802 2.8079 44 1 3.4937 5.3949 0.5926 45 1 2.3039 4.3166 1.3622 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257240761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:32 Heat of formation + Delta-G solvation = -84.287349 kcal Electronic energy + Delta-G solvation = -24686.582893 eV Core-core repulsion = 21251.563859 eV Total energy + Delta-G solvation = -3435.019034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.72538 -38.19513 -37.39855 -36.97415 -35.26858 -33.58328 -31.86915 -31.44974 -30.25295 -29.11594 -26.38137 -24.69817 -24.04391 -22.62551 -21.60196 -21.20323 -19.79979 -18.82166 -17.90182 -17.21387 -17.07362 -16.87507 -16.12350 -15.72086 -15.47347 -15.31724 -15.04167 -14.88798 -14.35366 -14.17025 -13.96118 -13.94593 -13.67638 -13.54176 -13.45230 -13.15784 -13.01297 -12.86702 -12.82487 -12.74219 -12.58545 -12.35989 -12.12197 -11.98840 -11.90428 -11.77006 -11.63658 -11.63094 -11.37209 -11.16332 -10.87944 -10.39674 -9.85588 -8.41343 -7.71105 -5.33316 -0.65069 1.45861 1.50419 1.54243 1.68107 2.54887 2.94946 3.19815 3.33560 3.60680 3.76478 4.08463 4.14135 4.23033 4.23644 4.32188 4.41284 4.42518 4.48132 4.62370 4.67292 4.70818 4.84628 4.92490 4.93645 4.95289 5.00826 5.08639 5.09433 5.13351 5.21848 5.29106 5.38350 5.47737 5.51281 5.57693 5.66168 5.71302 5.78109 5.83146 5.98439 6.58173 7.29052 8.00306 8.52816 9.22936 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.004862 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.476620 B = 5757.258979 C = 6898.623619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.118 4.118 4 C 0.148 3.852 5 N -0.594 5.594 6 C -0.241 4.241 7 H 0.056 0.944 8 C -0.034 4.034 9 N -0.916 5.916 10 Si 0.941 3.059 11 H -0.276 1.276 12 H -0.300 1.300 13 H -0.284 1.284 14 C 0.172 3.828 15 C -0.124 4.124 16 C 0.131 3.869 17 N -0.998 5.998 18 S 2.623 3.377 19 C -0.660 4.660 20 O -0.988 6.988 21 O -0.991 6.991 22 C 0.129 3.871 23 C -0.133 4.133 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.247 0.753 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 6.594 7.806 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.158 4.158 4 C 0.022 3.978 5 N -0.314 5.314 6 C -0.372 4.372 7 H 0.074 0.926 8 C -0.231 4.231 9 N -0.561 5.561 10 Si 0.770 3.230 11 H -0.202 1.202 12 H -0.226 1.226 13 H -0.211 1.211 14 C 0.065 3.935 15 C -0.164 4.164 16 C 0.006 3.994 17 N -0.836 5.836 18 S 2.720 3.280 19 C -0.813 4.813 20 O -0.978 6.978 21 O -0.982 6.982 22 C 0.003 3.997 23 C -0.173 4.173 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.918 6.835 8.582 11.650 hybrid contribution 0.186 -0.071 -2.132 2.141 sum -3.732 6.764 6.450 10.064 Atomic orbital electron populations 1.21713 0.94802 1.01838 1.01638 1.21441 0.96553 0.96620 1.01100 1.21976 0.97971 0.95886 0.99921 1.20856 0.91249 0.86168 0.99543 1.44079 1.74686 1.11554 1.01066 1.18974 1.33618 0.95085 0.89555 0.92650 1.25688 0.97321 0.98615 1.01473 1.70105 1.36291 1.19472 1.30233 0.85767 0.77504 0.77703 0.81994 1.20202 1.22635 1.21074 1.20477 0.92523 0.92750 0.87708 1.22113 0.98498 0.99523 0.96293 1.21415 0.90337 0.90596 0.97086 1.57580 1.13267 1.24991 1.87746 1.04307 0.72703 0.73235 0.77783 1.30438 1.13068 1.14843 1.22903 1.93544 1.53877 1.79350 1.71069 1.93545 1.43741 1.85600 1.75313 1.21469 0.79633 1.01021 0.97533 1.22273 0.99943 0.98496 0.96627 0.93513 0.91811 0.92243 0.93751 0.91944 0.92955 0.94773 0.92492 0.96124 0.94422 0.92966 0.92774 0.93503 0.89018 0.90619 0.84203 0.83503 0.84641 0.90430 0.88391 0.92604 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.68 5.93 30.59 0.18 -3.50 16 3 C -0.12 -4.35 5.54 30.59 0.17 -4.18 16 4 C 0.15 6.51 5.28 86.38 0.46 6.97 16 5 N -0.59 -26.51 2.36 -677.90 -1.60 -28.11 16 6 C -0.24 -11.98 8.09 84.03 0.68 -11.30 16 7 H 0.06 2.73 7.11 -2.91 -0.02 2.71 16 8 C -0.03 -1.77 4.96 84.86 0.42 -1.35 16 9 N -0.92 -51.19 11.47 21.65 0.25 -50.94 16 10 Si 0.94 42.82 29.60 68.60 2.03 44.85 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.17 6.22 2.60 45.02 0.12 6.34 16 15 C -0.12 -4.29 5.22 30.67 0.16 -4.13 16 16 C 0.13 3.56 6.31 86.36 0.55 4.11 16 17 N -1.00 -25.00 3.22 -513.06 -1.65 -26.66 16 18 S 2.62 61.29 6.05 -56.49 -0.34 60.95 16 19 C -0.66 -11.05 10.99 113.37 1.25 -9.81 16 20 O -0.99 -27.83 16.72 -127.65 -2.13 -29.97 16 21 O -0.99 -29.05 16.73 -127.65 -2.14 -31.18 16 22 C 0.13 3.15 6.31 86.36 0.55 3.70 16 23 C -0.13 -4.00 5.38 30.67 0.17 -3.83 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.96 5.53 -2.39 -0.01 2.94 16 32 H 0.02 0.87 7.88 -2.39 -0.02 0.85 16 33 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 34 H 0.05 1.83 7.77 -2.39 -0.02 1.81 16 35 H 0.05 2.02 7.61 -2.39 -0.02 2.00 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.31 7.10 -2.39 -0.02 2.30 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.14 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.10 2.11 7.10 -2.39 -0.02 2.09 16 44 H 0.06 1.79 7.25 -2.38 -0.02 1.77 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.33 363.66 0.75 -64.57 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.94 Total: 16.32 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 5.40 Total: -19.85 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.00 Total: -105.71 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -4.27 Total: -61.15 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 61.29 SS G_CDS: -0.34 Total: 60.95 kcal Total: -65.33 0.75 -64.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257240761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.714 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds