Wall clock time and date at job start Tue Mar 31 2020 08:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46930 * 184.81291 * 3 2 1 5 5 H 1.08998 * 109.99687 * 305.87135 * 4 3 2 6 6 C 1.54312 * 109.77645 * 67.02893 * 4 3 2 7 7 C 1.55150 * 102.86368 * 141.88660 * 6 4 3 8 8 C 1.54910 * 101.58035 * 324.30082 * 7 6 4 9 9 N 1.47015 * 109.88082 * 184.78065 * 4 3 2 10 10 S 1.65605 * 125.65357 * 61.67451 * 9 4 3 11 11 O 1.42101 * 106.39841 * 342.52670 * 10 9 4 12 12 O 1.42098 * 106.40540 * 209.60517 * 10 9 4 13 13 N 1.65597 * 107.21781 * 96.06026 * 10 9 4 14 14 C 1.46501 * 120.00545 * 274.96955 * 13 10 9 15 15 C 1.52998 * 109.46709 * 265.00183 * 14 13 10 16 16 C 1.46500 * 119.99726 * 94.96461 * 13 10 9 17 17 C 1.50698 * 109.47312 * 94.26772 * 16 13 10 18 18 H 1.07998 * 119.99678 * 4.61284 * 17 16 13 19 19 C 1.37877 * 120.00210 * 184.62013 * 17 16 13 20 20 N 1.31516 * 120.00145 * 5.03107 * 19 17 16 21 21 Si 1.86798 * 119.99975 * 185.03441 * 19 17 16 22 22 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47460 * 59.99500 * 21 19 17 24 24 H 1.48501 * 109.47189 * 299.99522 * 21 19 17 25 25 H 1.09001 * 109.47150 * 304.96734 * 1 2 3 26 26 H 1.09003 * 109.47644 * 64.96366 * 1 2 3 27 27 H 1.09003 * 109.47392 * 184.96323 * 1 2 3 28 28 H 1.09007 * 109.46800 * 240.00374 * 2 1 3 29 29 H 1.08999 * 109.47068 * 120.00635 * 2 1 3 30 30 H 1.09004 * 109.47069 * 64.81430 * 3 2 1 31 31 H 1.09004 * 109.46927 * 304.81466 * 3 2 1 32 32 H 1.09006 * 110.92102 * 23.46782 * 6 4 3 33 33 H 1.08995 * 110.58986 * 260.14867 * 6 4 3 34 34 H 1.09002 * 111.00281 * 206.23045 * 7 6 4 35 35 H 1.08997 * 111.04104 * 82.39387 * 7 6 4 36 36 H 1.08997 * 110.37132 * 278.17004 * 8 7 6 37 37 H 1.09003 * 110.45893 * 155.89630 * 8 7 6 38 38 H 1.09002 * 109.46982 * 24.99368 * 14 13 10 39 39 H 1.08995 * 109.47866 * 144.99651 * 14 13 10 40 40 H 1.09001 * 109.47193 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.46733 * 299.99337 * 15 14 13 42 42 H 1.08995 * 109.47785 * 59.99845 * 15 14 13 43 43 H 1.09000 * 109.47225 * 334.26509 * 16 13 10 44 44 H 1.09000 * 109.47220 * 214.26434 * 16 13 10 45 45 H 0.97003 * 119.99789 * 354.89926 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1210 5 1 4.0018 0.8214 0.6598 6 6 3.9793 0.9156 -1.5104 7 6 5.1900 1.8147 -1.8752 8 6 4.7660 3.1718 -1.2603 9 7 4.0743 2.8187 -0.0072 10 16 3.9049 3.8046 1.3125 11 8 2.8623 3.2456 2.0997 12 8 3.8765 5.1363 0.8176 13 7 5.2913 3.6677 2.2078 14 6 5.4319 2.5799 3.1789 15 6 5.0202 3.0780 4.5657 16 6 6.3773 4.6345 2.0285 17 6 6.2396 5.7389 3.0446 18 1 5.4697 5.6845 3.8001 19 6 7.0963 6.8186 3.0098 20 7 7.9686 6.9346 2.0324 21 14 7.0180 8.1167 4.3507 22 1 8.0360 9.1647 4.0852 23 1 7.2896 7.4856 5.6672 24 1 5.6663 8.7316 4.3661 25 1 -0.3633 0.5890 0.8422 26 1 -0.3634 0.4349 -0.9311 27 1 -0.3634 -1.0238 0.0889 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7488 1.9308 0.9300 31 1 1.6079 1.9806 -0.8438 32 1 3.1724 1.0438 -2.2320 33 1 4.2802 -0.1301 -1.4487 34 1 5.3056 1.8946 -2.9561 35 1 6.1052 1.4451 -1.4128 36 1 4.0882 3.6977 -1.9326 37 1 5.6422 3.7852 -1.0501 38 1 4.7918 1.7473 2.8870 39 1 6.4699 2.2482 3.2053 40 1 5.1244 2.2685 5.2882 41 1 5.6604 3.9105 4.8575 42 1 3.9822 3.4096 4.5393 43 1 6.3265 5.0561 1.0246 44 1 7.3358 4.1336 2.1642 45 1 8.0604 6.2250 1.3775 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365468170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:22 Heat of formation + Delta-G solvation = -95.044772 kcal Electronic energy + Delta-G solvation = -25146.393887 eV Core-core repulsion = 21710.908376 eV Total energy + Delta-G solvation = -3435.485511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.91168 -36.69682 -36.17600 -35.18525 -34.58539 -32.81725 -30.84720 -29.85827 -29.67825 -26.31020 -25.53541 -22.78432 -22.29036 -21.84974 -21.74347 -20.58331 -18.45761 -17.44841 -17.00777 -16.74070 -15.92264 -15.21112 -15.12611 -14.18868 -13.97152 -13.75013 -13.67797 -13.51664 -13.32044 -13.28271 -12.98371 -12.75464 -12.30677 -12.13395 -11.93937 -11.78823 -11.68711 -11.52304 -11.28729 -11.25937 -11.15820 -11.03146 -11.00169 -10.86765 -10.80445 -10.73707 -10.48525 -10.30561 -10.17301 -10.01703 -9.32025 -8.83574 -8.36392 -7.94440 -6.37045 -4.08809 1.12474 3.44468 3.46698 3.48915 3.66247 4.02231 4.45643 4.54879 4.59355 4.73222 4.93454 4.97630 5.08901 5.10916 5.25901 5.31284 5.39936 5.42751 5.49306 5.62419 5.70588 5.75463 5.77479 5.78587 5.80864 5.86750 5.89373 5.91360 6.06859 6.09712 6.16848 6.21428 6.33422 6.40702 6.47073 6.54762 6.69984 6.88619 6.96491 7.20025 7.51806 8.03125 8.46130 8.81535 9.59873 10.99997 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.004826 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.938970 B = 5800.210408 C = 6323.212476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.155 3.845 5 H 0.069 0.931 6 C -0.123 4.123 7 C -0.130 4.130 8 C 0.122 3.878 9 N -1.021 6.021 10 S 2.792 3.208 11 O -0.986 6.986 12 O -0.961 6.961 13 N -0.989 5.989 14 C 0.138 3.862 15 C -0.172 4.172 16 C 0.248 3.752 17 C -0.606 4.606 18 H 0.058 0.942 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 1.067 2.933 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.027 0.973 44 H 0.022 0.978 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -15.775 -6.429 18.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.194 4.194 4 C 0.048 3.952 5 H 0.087 0.913 6 C -0.161 4.161 7 C -0.169 4.169 8 C -0.004 4.004 9 N -0.859 5.859 10 S 2.802 3.198 11 O -0.970 6.970 12 O -0.945 6.945 13 N -0.830 5.830 14 C 0.011 3.989 15 C -0.231 4.231 16 C 0.125 3.875 17 C -0.646 4.646 18 H 0.076 0.924 19 C -0.183 4.183 20 N -0.545 5.545 21 Si 0.895 3.105 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.040 0.960 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.760 -13.691 -5.682 16.731 hybrid contribution -0.278 -1.675 -0.528 1.778 sum -8.038 -15.366 -6.210 18.420 Atomic orbital electron populations 1.21769 0.95919 1.01347 1.01947 1.21439 0.95885 0.96403 1.01840 1.22403 0.94709 0.97739 1.04517 1.21261 0.93654 0.82399 0.97854 0.91262 1.22704 0.98174 0.99393 0.95864 1.22784 0.98285 0.95006 1.00864 1.21909 0.96342 0.96889 0.85231 1.59516 1.69964 1.26654 1.29747 1.01726 0.73305 0.72662 0.72139 1.93494 1.54633 1.80111 1.68803 1.93622 1.86400 1.34087 1.80356 1.57736 1.36678 1.38259 1.50354 1.20925 1.01029 0.87712 0.89208 1.22261 1.02609 1.02003 0.96245 1.19116 0.84459 0.86517 0.97405 1.22332 1.19082 1.07179 1.15982 0.92422 1.25784 0.93393 0.99183 0.99927 1.70808 1.36146 1.34597 1.12948 0.83577 0.76376 0.75834 0.74739 1.20675 1.21350 1.21300 0.92478 0.92927 0.92936 0.92069 0.91937 0.88745 0.91742 0.90602 0.90552 0.90271 0.90668 0.91628 0.90679 0.92407 0.91372 0.93082 0.90324 0.92570 0.95474 0.96048 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.16 5.85 -26.73 -0.16 -1.32 16 3 C -0.15 -1.97 4.70 -26.73 -0.13 -2.09 16 4 C 0.15 1.97 3.06 -66.96 -0.20 1.76 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.12 -1.18 5.51 -24.91 -0.14 -1.32 16 7 C -0.13 -1.34 7.08 -24.59 -0.17 -1.51 16 8 C 0.12 1.71 7.05 -2.53 -0.02 1.69 16 9 N -1.02 -16.26 3.46 -104.43 -0.36 -16.62 16 10 S 2.79 57.84 6.17 -107.50 -0.66 57.17 16 11 O -0.99 -20.70 14.32 -57.17 -0.82 -21.52 16 12 O -0.96 -24.14 16.63 -57.17 -0.95 -25.09 16 13 N -0.99 -20.91 2.85 -115.67 -0.33 -21.24 16 14 C 0.14 2.45 6.08 -4.04 -0.02 2.42 16 15 C -0.17 -3.12 9.82 37.16 0.36 -2.75 16 16 C 0.25 6.18 4.54 -5.19 -0.02 6.16 16 17 C -0.61 -17.09 8.54 -34.44 -0.29 -17.39 16 18 H 0.06 1.63 6.71 -52.49 -0.35 1.28 16 19 C 0.02 0.62 5.45 -17.82 -0.10 0.53 16 20 N -0.91 -27.35 13.65 55.43 0.76 -26.59 16 21 Si 1.07 25.65 29.91 -169.99 -5.08 20.56 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.51 7.33 -51.92 -0.38 0.13 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.47 5.66 -51.93 -0.29 1.18 16 31 H 0.06 0.79 8.03 -51.93 -0.42 0.38 16 32 H 0.08 0.67 7.78 -51.93 -0.40 0.27 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 39 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.60 6.56 -51.93 -0.34 1.26 16 42 H 0.06 1.07 8.01 -51.93 -0.42 0.66 16 43 H 0.03 0.72 7.08 -51.93 -0.37 0.36 16 44 H 0.02 0.53 7.99 -51.93 -0.42 0.12 16 45 H 0.27 7.86 7.16 -40.82 -0.29 7.57 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -33.59 363.52 -10.44 -44.02 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.94 Total: -1.32 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.52 Total: -14.86 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: 0.07 Total: -64.45 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -1.77 Total: -46.60 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.56 kcal Atomic # 16 Polarization: 57.84 SS G_CDS: -0.66 Total: 57.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.59 -10.44 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365468170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.020 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds