Wall clock time and date at job start Tue Mar 31 2020 08:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46930 * 184.81291 * 3 2 1 5 5 H 1.08998 * 109.99687 * 305.87135 * 4 3 2 6 6 C 1.54312 * 109.77645 * 67.02893 * 4 3 2 7 7 C 1.55150 * 102.86368 * 141.88660 * 6 4 3 8 8 C 1.54910 * 101.58035 * 324.30082 * 7 6 4 9 9 N 1.47015 * 109.88082 * 184.78065 * 4 3 2 10 10 S 1.65605 * 125.65357 * 61.67451 * 9 4 3 11 11 O 1.42101 * 106.39841 * 342.52670 * 10 9 4 12 12 O 1.42098 * 106.40540 * 209.60517 * 10 9 4 13 13 N 1.65597 * 107.21781 * 96.06026 * 10 9 4 14 14 C 1.46501 * 120.00545 * 274.96955 * 13 10 9 15 15 C 1.52998 * 109.46709 * 265.00183 * 14 13 10 16 16 C 1.46500 * 119.99726 * 94.96461 * 13 10 9 17 17 C 1.50698 * 109.47312 * 94.26772 * 16 13 10 18 18 H 1.07998 * 119.99678 * 4.61284 * 17 16 13 19 19 C 1.37877 * 120.00210 * 184.62013 * 17 16 13 20 20 N 1.31516 * 120.00145 * 5.03107 * 19 17 16 21 21 Si 1.86798 * 119.99975 * 185.03441 * 19 17 16 22 22 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47460 * 59.99500 * 21 19 17 24 24 H 1.48501 * 109.47189 * 299.99522 * 21 19 17 25 25 H 1.09001 * 109.47150 * 304.96734 * 1 2 3 26 26 H 1.09003 * 109.47644 * 64.96366 * 1 2 3 27 27 H 1.09003 * 109.47392 * 184.96323 * 1 2 3 28 28 H 1.09007 * 109.46800 * 240.00374 * 2 1 3 29 29 H 1.08999 * 109.47068 * 120.00635 * 2 1 3 30 30 H 1.09004 * 109.47069 * 64.81430 * 3 2 1 31 31 H 1.09004 * 109.46927 * 304.81466 * 3 2 1 32 32 H 1.09006 * 110.92102 * 23.46782 * 6 4 3 33 33 H 1.08995 * 110.58986 * 260.14867 * 6 4 3 34 34 H 1.09002 * 111.00281 * 206.23045 * 7 6 4 35 35 H 1.08997 * 111.04104 * 82.39387 * 7 6 4 36 36 H 1.08997 * 110.37132 * 278.17004 * 8 7 6 37 37 H 1.09003 * 110.45893 * 155.89630 * 8 7 6 38 38 H 1.09002 * 109.46982 * 24.99368 * 14 13 10 39 39 H 1.08995 * 109.47866 * 144.99651 * 14 13 10 40 40 H 1.09001 * 109.47193 * 179.97438 * 15 14 13 41 41 H 1.09002 * 109.46733 * 299.99337 * 15 14 13 42 42 H 1.08995 * 109.47785 * 59.99845 * 15 14 13 43 43 H 1.09000 * 109.47225 * 334.26509 * 16 13 10 44 44 H 1.09000 * 109.47220 * 214.26434 * 16 13 10 45 45 H 0.97003 * 119.99789 * 354.89926 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1210 5 1 4.0018 0.8214 0.6598 6 6 3.9793 0.9156 -1.5104 7 6 5.1900 1.8147 -1.8752 8 6 4.7660 3.1718 -1.2603 9 7 4.0743 2.8187 -0.0072 10 16 3.9049 3.8046 1.3125 11 8 2.8623 3.2456 2.0997 12 8 3.8765 5.1363 0.8176 13 7 5.2913 3.6677 2.2078 14 6 5.4319 2.5799 3.1789 15 6 5.0202 3.0780 4.5657 16 6 6.3773 4.6345 2.0285 17 6 6.2396 5.7389 3.0446 18 1 5.4697 5.6845 3.8001 19 6 7.0963 6.8186 3.0098 20 7 7.9686 6.9346 2.0324 21 14 7.0180 8.1167 4.3507 22 1 8.0360 9.1647 4.0852 23 1 7.2896 7.4856 5.6672 24 1 5.6663 8.7316 4.3661 25 1 -0.3633 0.5890 0.8422 26 1 -0.3634 0.4349 -0.9311 27 1 -0.3634 -1.0238 0.0889 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7488 1.9308 0.9300 31 1 1.6079 1.9806 -0.8438 32 1 3.1724 1.0438 -2.2320 33 1 4.2802 -0.1301 -1.4487 34 1 5.3056 1.8946 -2.9561 35 1 6.1052 1.4451 -1.4128 36 1 4.0882 3.6977 -1.9326 37 1 5.6422 3.7852 -1.0501 38 1 4.7918 1.7473 2.8870 39 1 6.4699 2.2482 3.2053 40 1 5.1244 2.2685 5.2882 41 1 5.6604 3.9105 4.8575 42 1 3.9822 3.4096 4.5393 43 1 6.3265 5.0561 1.0246 44 1 7.3358 4.1336 2.1642 45 1 8.0604 6.2250 1.3775 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365468170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:22 Heat of formation + Delta-G solvation = -117.411252 kcal Electronic energy + Delta-G solvation = -25147.363771 eV Core-core repulsion = 21710.908376 eV Total energy + Delta-G solvation = -3436.455395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93912 -38.41786 -37.91325 -36.94368 -35.48468 -34.90779 -31.89854 -31.43860 -30.67973 -28.29385 -26.48320 -24.81262 -23.64348 -23.09729 -22.66434 -21.52362 -19.96628 -19.25581 -18.62295 -18.44472 -17.25329 -16.62920 -16.03780 -15.79139 -15.61273 -15.41878 -14.87892 -14.80960 -14.75095 -14.52363 -14.10164 -14.00766 -13.74568 -13.65571 -13.52412 -13.19957 -13.08362 -13.00451 -12.85788 -12.75779 -12.59936 -12.48102 -12.26821 -12.06274 -11.97672 -11.82797 -11.78099 -11.70698 -11.55057 -11.27240 -11.22008 -10.55000 -10.08589 -9.79457 -8.64409 -6.37681 -0.48076 1.50163 1.57800 1.77280 1.95602 2.46957 2.56061 3.12678 3.18253 3.55970 3.77281 3.81353 3.88054 4.11768 4.20569 4.24591 4.33713 4.39254 4.40396 4.51674 4.56700 4.61382 4.67879 4.79561 4.87683 4.89616 4.92817 4.94830 4.99845 5.02820 5.05219 5.06398 5.18029 5.27333 5.32516 5.38924 5.42709 5.46294 5.49281 5.53879 5.81345 5.87531 6.22502 6.54475 7.38086 8.72304 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.004826 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.938970 B = 5800.210408 C = 6323.212476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.156 4.156 4 C 0.143 3.857 5 H 0.078 0.922 6 C -0.111 4.111 7 C -0.119 4.119 8 C 0.108 3.892 9 N -1.017 6.017 10 S 2.801 3.199 11 O -0.994 6.994 12 O -1.015 7.015 13 N -0.995 5.995 14 C 0.128 3.872 15 C -0.170 4.170 16 C 0.261 3.739 17 C -0.618 4.618 18 H 0.049 0.951 19 C -0.028 4.028 20 N -0.932 5.932 21 Si 1.107 2.893 22 H -0.278 1.278 23 H -0.262 1.262 24 H -0.282 1.282 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.005 0.995 44 H 0.023 0.977 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 -18.463 -6.906 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.195 4.195 4 C 0.037 3.963 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.017 4.017 9 N -0.858 5.858 10 S 2.813 3.187 11 O -0.978 6.978 12 O -0.999 6.999 13 N -0.835 5.835 14 C 0.003 3.997 15 C -0.229 4.229 16 C 0.136 3.864 17 C -0.657 4.657 18 H 0.067 0.933 19 C -0.227 4.227 20 N -0.569 5.569 21 Si 0.928 3.072 22 H -0.203 1.203 23 H -0.187 1.187 24 H -0.208 1.208 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.041 0.959 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.984 -16.413 -6.139 19.256 hybrid contribution -0.285 -0.928 -0.427 1.061 sum -8.269 -17.341 -6.566 20.302 Atomic orbital electron populations 1.21790 0.95708 1.02167 1.01508 1.21433 0.96068 0.94375 1.03154 1.22389 0.94898 0.99561 1.02637 1.21669 0.93599 0.80454 1.00532 0.90443 1.22736 0.98060 1.00582 0.93609 1.22780 0.98634 0.92219 1.02148 1.22178 0.95550 0.99377 0.84595 1.59127 1.70154 1.27777 1.28762 1.01088 0.73063 0.72044 0.72543 1.93481 1.54792 1.79904 1.69647 1.93547 1.87095 1.37925 1.81357 1.57663 1.35416 1.38543 1.51884 1.21241 1.02802 0.87389 0.88276 1.22229 1.00727 1.02390 0.97561 1.18723 0.85633 0.86667 0.95333 1.22672 1.18519 1.08211 1.16279 0.93252 1.27149 0.92932 1.01458 1.01175 1.70912 1.37469 1.34716 1.13807 0.83082 0.76593 0.73983 0.73516 1.20301 1.18717 1.20805 0.94138 0.92478 0.91234 0.89544 0.91730 0.92206 0.91823 0.89272 0.87493 0.87610 0.90355 0.91324 0.92920 0.89536 0.89736 0.89234 0.93084 0.94293 0.97673 0.95867 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.84 16 2 C -0.11 -1.91 5.85 30.59 0.18 -1.73 16 3 C -0.16 -3.74 4.70 30.60 0.14 -3.59 16 4 C 0.14 3.32 3.06 45.34 0.14 3.46 16 5 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.11 -1.69 5.51 31.78 0.18 -1.52 16 7 C -0.12 -2.09 7.08 31.98 0.23 -1.86 16 8 C 0.11 2.99 7.05 86.85 0.61 3.60 16 9 N -1.02 -32.08 3.46 -484.30 -1.67 -33.75 16 10 S 2.80 119.12 6.17 -56.49 -0.35 118.77 16 11 O -0.99 -42.48 14.32 -128.00 -1.83 -44.31 16 12 O -1.02 -53.56 16.63 -128.00 -2.13 -55.69 16 13 N -0.99 -42.68 2.85 -519.86 -1.48 -44.16 16 14 C 0.13 4.42 6.08 86.38 0.53 4.94 16 15 C -0.17 -6.04 9.82 71.98 0.71 -5.34 16 16 C 0.26 13.43 4.54 85.63 0.39 13.82 16 17 C -0.62 -35.73 8.54 25.60 0.22 -35.51 16 18 H 0.05 2.88 6.71 -2.91 -0.02 2.86 16 19 C -0.03 -1.66 5.45 84.65 0.46 -1.20 16 20 N -0.93 -57.34 13.65 21.45 0.29 -57.04 16 21 Si 1.11 51.93 29.91 68.60 2.05 53.98 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 1.06 7.33 -2.38 -0.02 1.04 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.86 5.66 -2.38 -0.01 1.85 16 31 H 0.06 1.50 8.03 -2.39 -0.02 1.48 16 32 H 0.09 1.17 7.78 -2.38 -0.02 1.15 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.49 7.75 -2.39 -0.02 2.47 16 39 H 0.08 2.64 8.00 -2.39 -0.02 2.62 16 40 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.08 6.56 -2.39 -0.02 2.06 16 42 H 0.04 1.48 8.01 -2.39 -0.02 1.46 16 43 H 0.01 0.30 7.08 -2.39 -0.02 0.28 16 44 H 0.02 1.18 7.99 -2.39 -0.02 1.16 16 45 H 0.26 15.76 7.16 -92.71 -0.66 15.10 16 Total: -1.00 -75.79 363.52 0.42 -75.38 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.05 Total: 13.59 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.49 Total: -26.76 kcal Atomic # 7 Polarization: -132.10 SS G_CDS: -2.86 Total: -134.96 kcal Atomic # 8 Polarization: -96.04 SS G_CDS: -3.96 Total: -100.00 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Atomic # 16 Polarization: 119.12 SS G_CDS: -0.35 Total: 118.77 kcal Total: -75.79 0.42 -75.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365468170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.033 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds