Wall clock time and date at job start Tue Mar 31 2020 08:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47155 * 54.99558 * 4 3 2 6 6 N 1.46503 * 109.47038 * 295.00135 * 4 3 2 7 7 C 1.34778 * 120.00347 * 154.99885 * 6 4 3 8 8 O 1.21279 * 119.99700 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00019 * 179.97438 * 7 6 4 10 10 H 1.08991 * 109.47485 * 300.00725 * 9 7 6 11 11 C 1.50702 * 109.46953 * 60.00421 * 9 7 6 12 12 H 1.08001 * 120.00047 * 35.05140 * 11 9 7 13 13 C 1.37878 * 120.00385 * 215.05339 * 11 9 7 14 14 N 1.31520 * 119.99366 * 5.10586 * 13 11 9 15 15 Si 1.86793 * 120.00404 * 185.10427 * 13 11 9 16 16 H 1.48500 * 109.47167 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.47359 * 209.99817 * 15 13 11 18 18 H 1.48498 * 109.47304 * 330.00041 * 15 13 11 19 19 C 1.50702 * 109.47144 * 179.97438 * 9 7 6 20 20 C 1.38239 * 119.99666 * 113.75352 * 19 9 7 21 21 C 1.38228 * 119.99834 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00095 * 359.97438 * 21 20 19 23 23 C 1.38239 * 120.00105 * 0.02562 * 22 21 20 24 24 C 1.38230 * 119.99632 * 0.08612 * 23 22 21 25 25 C 1.50696 * 109.47371 * 175.00169 * 4 3 2 26 26 N 1.34778 * 119.99962 * 299.99767 * 25 4 3 27 27 O 1.21278 * 120.00091 * 119.99886 * 25 4 3 28 28 H 1.09001 * 109.46924 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.47229 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47440 * 240.00211 * 2 1 3 32 32 H 1.08999 * 109.47229 * 120.00154 * 2 1 3 33 33 H 1.08997 * 109.47466 * 60.00071 * 3 2 1 34 34 H 1.08999 * 109.47221 * 300.00160 * 3 2 1 35 35 H 0.97006 * 119.99645 * 334.99938 * 6 4 3 36 36 H 0.96997 * 119.99551 * 180.02562 * 14 13 11 37 37 H 1.07996 * 119.99704 * 0.02562 * 20 19 9 38 38 H 1.08004 * 120.00221 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.99810 * 179.72501 * 22 21 20 40 40 H 1.07997 * 119.99738 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00091 * 179.97438 * 24 23 22 42 42 H 0.97002 * 119.99934 * 359.97438 * 26 25 4 43 43 H 0.97002 * 120.00211 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.2809 0.2921 1.2981 8 8 5.9756 0.2653 0.3044 9 6 5.7839 -0.3080 2.5857 10 1 5.8209 0.4625 3.3557 11 6 4.8543 -1.4107 3.0228 12 1 4.3735 -2.0359 2.2850 13 6 4.6175 -1.6214 4.3647 14 7 5.1221 -0.7990 5.2584 15 14 3.5802 -3.0748 4.9132 16 1 4.4569 -4.2522 5.1374 17 1 2.8778 -2.7331 6.1762 18 1 2.5811 -3.3946 3.8622 19 6 7.1650 -0.8716 2.3714 20 6 8.2501 -0.3048 3.0134 21 6 9.5169 -0.8220 2.8173 22 6 9.6986 -1.9065 1.9795 23 6 8.6135 -2.4734 1.3374 24 6 7.3471 -1.9546 1.5318 25 6 4.0723 2.8580 -0.1244 26 7 3.7462 3.5968 -1.2035 27 8 4.7699 3.3323 0.7469 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.5030 0.8798 2.0456 36 1 4.9558 -0.9474 6.2025 37 1 8.1079 0.5417 3.6689 38 1 10.3646 -0.3794 3.3192 39 1 10.6890 -2.3078 1.8228 40 1 8.7556 -3.3203 0.6826 41 1 6.4993 -2.3972 1.0299 42 1 3.1886 3.2173 -1.9006 43 1 4.0698 4.5077 -1.2834 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412092266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:58 Heat of formation + Delta-G solvation = -72.625842 kcal Electronic energy + Delta-G solvation = -25423.666692 eV Core-core repulsion = 21853.709387 eV Total energy + Delta-G solvation = -3569.957305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91754 -38.66349 -37.50675 -35.75622 -33.60632 -33.47264 -32.80101 -31.05131 -29.89183 -29.14871 -27.09096 -24.66861 -23.77064 -21.56558 -21.22834 -21.19336 -19.98258 -19.32751 -17.46291 -16.87636 -16.50041 -16.12630 -15.85105 -15.32983 -14.66471 -14.57683 -14.35678 -14.06244 -13.95626 -13.74159 -13.30458 -13.03652 -12.73273 -12.49372 -12.40489 -12.20213 -11.82435 -11.60061 -11.44468 -11.18024 -11.08611 -11.04229 -10.98964 -10.63332 -10.37158 -10.22845 -9.93961 -9.83560 -9.55496 -9.38416 -8.76116 -8.57189 -8.33648 -7.90047 -7.56646 -6.23746 -4.29785 2.42239 2.44873 2.86474 3.21533 3.29183 3.29693 3.45547 3.86598 4.10623 4.31456 4.73188 4.87612 4.93165 5.02669 5.13674 5.27041 5.41793 5.51139 5.60023 5.76063 5.80282 5.83703 5.87654 5.93938 6.08198 6.21347 6.26843 6.39335 6.41893 6.54246 6.65214 6.86671 6.93437 7.02320 7.10819 7.27276 7.41338 7.46072 7.49704 7.65585 7.80824 8.01102 8.11655 8.40148 8.45836 8.74773 9.28859 9.36221 10.84824 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.006093 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.642878 B = 4594.602598 C = 6248.797836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.119 4.119 4 C 0.129 3.871 5 H 0.109 0.891 6 N -0.706 5.706 7 C 0.538 3.462 8 O -0.568 6.568 9 C 0.049 3.951 10 H 0.094 0.906 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.075 3.925 14 N -0.878 5.878 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.010 4.010 20 C -0.119 4.119 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.135 4.135 24 C -0.085 4.085 25 C 0.503 3.497 26 N -0.861 5.861 27 O -0.525 6.525 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.410 0.590 36 H 0.267 0.733 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.397 0.603 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 3.578 -10.129 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.157 4.157 4 C 0.019 3.981 5 H 0.126 0.874 6 N -0.358 5.358 7 C 0.329 3.671 8 O -0.447 6.447 9 C 0.028 3.972 10 H 0.112 0.888 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.513 5.513 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.011 4.011 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.167 4.167 23 C -0.153 4.153 24 C -0.103 4.103 25 C 0.286 3.714 26 N -0.426 5.426 27 O -0.399 6.399 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.246 0.754 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.225 0.775 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.672 3.716 -9.922 12.018 hybrid contribution -0.851 -0.528 0.380 1.071 sum -6.523 3.188 -9.543 11.991 Atomic orbital electron populations 1.21757 0.95865 1.01697 1.01440 1.21552 0.95550 0.95708 1.03646 1.21832 0.92044 0.98740 1.03078 1.20742 0.94571 0.90837 0.91992 0.87370 1.45611 1.19240 1.59410 1.11511 1.21596 0.79436 0.74599 0.91513 1.90563 1.56515 1.59557 1.38064 1.18119 0.90013 0.97993 0.91031 0.88823 1.20672 1.26776 1.15718 0.92016 0.91924 1.24969 0.95323 0.96066 0.96676 1.69896 1.44042 1.35693 1.01709 0.86514 0.80195 0.82719 0.78187 1.20384 1.21096 1.19614 1.20059 0.95094 0.93664 0.92322 1.21022 0.92238 1.00163 1.00288 1.20902 0.96763 0.97531 0.99791 1.20793 0.97781 0.98172 1.00001 1.20943 0.93384 1.00188 1.00804 1.20813 0.95930 0.95958 0.97638 1.21485 0.79743 0.88863 0.81336 1.43908 1.56635 1.17875 1.24161 1.90756 1.36489 1.72571 1.40117 0.92691 0.93128 0.92679 0.91810 0.90225 0.90765 0.90733 0.75449 0.92334 0.86972 0.87568 0.87746 0.87630 0.87108 0.77451 0.77322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.13 -1.42 5.82 -26.73 -0.16 -1.58 16 3 C -0.12 -1.28 4.70 -26.73 -0.13 -1.40 16 4 C 0.13 1.92 2.38 -69.08 -0.16 1.76 16 5 H 0.11 1.66 7.58 -51.93 -0.39 1.26 16 6 N -0.71 -13.34 3.96 -54.93 -0.22 -13.56 16 7 C 0.54 12.35 6.87 -10.99 -0.08 12.28 16 8 O -0.57 -14.14 15.09 5.56 0.08 -14.06 16 9 C 0.05 1.22 2.45 -94.07 -0.23 0.99 16 10 H 0.09 2.51 6.99 -51.93 -0.36 2.15 16 11 C -0.51 -12.84 7.46 -34.44 -0.26 -13.10 16 12 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 13 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 14 N -0.88 -23.49 12.77 55.43 0.71 -22.78 16 15 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 20 C -0.12 -2.74 9.67 -39.58 -0.38 -3.12 16 21 C -0.13 -2.66 10.05 -39.59 -0.40 -3.06 16 22 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 24 C -0.09 -1.96 8.31 -39.59 -0.33 -2.29 16 25 C 0.50 7.95 7.46 -10.99 -0.08 7.87 16 26 N -0.86 -8.85 8.74 31.22 0.27 -8.57 16 27 O -0.53 -11.08 17.16 5.56 0.10 -10.98 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.58 7.43 -51.93 -0.39 0.19 16 35 H 0.41 7.59 8.49 -40.82 -0.35 7.24 16 36 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.11 2.53 7.96 -52.49 -0.42 2.12 16 38 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 39 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 40 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.53 7.89 -52.48 -0.41 2.11 16 42 H 0.40 2.68 8.19 -40.82 -0.33 2.34 16 43 H 0.40 3.66 8.93 -40.82 -0.36 3.30 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -32.81 365.70 -8.09 -40.90 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -6.35 Total: 16.64 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.17 Total: -8.00 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.76 Total: -44.91 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.18 Total: -25.04 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.81 -8.09 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412092266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.722 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds