Wall clock time and date at job start Tue Mar 31 2020 08:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.53001 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47155 * 54.99558 * 4 3 2 6 6 N 1.46503 * 109.47038 * 295.00135 * 4 3 2 7 7 C 1.34778 * 120.00347 * 154.99885 * 6 4 3 8 8 O 1.21279 * 119.99700 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00019 * 179.97438 * 7 6 4 10 10 H 1.08991 * 109.47485 * 300.00725 * 9 7 6 11 11 C 1.50702 * 109.46953 * 60.00421 * 9 7 6 12 12 H 1.08001 * 120.00047 * 35.05140 * 11 9 7 13 13 C 1.37878 * 120.00385 * 215.05339 * 11 9 7 14 14 N 1.31520 * 119.99366 * 5.10586 * 13 11 9 15 15 Si 1.86793 * 120.00404 * 185.10427 * 13 11 9 16 16 H 1.48500 * 109.47167 * 90.00138 * 15 13 11 17 17 H 1.48501 * 109.47359 * 209.99817 * 15 13 11 18 18 H 1.48498 * 109.47304 * 330.00041 * 15 13 11 19 19 C 1.50702 * 109.47144 * 179.97438 * 9 7 6 20 20 C 1.38239 * 119.99666 * 113.75352 * 19 9 7 21 21 C 1.38228 * 119.99834 * 179.97438 * 20 19 9 22 22 C 1.38238 * 120.00095 * 359.97438 * 21 20 19 23 23 C 1.38239 * 120.00105 * 0.02562 * 22 21 20 24 24 C 1.38230 * 119.99632 * 0.08612 * 23 22 21 25 25 C 1.50696 * 109.47371 * 175.00169 * 4 3 2 26 26 N 1.34778 * 119.99962 * 299.99767 * 25 4 3 27 27 O 1.21278 * 120.00091 * 119.99886 * 25 4 3 28 28 H 1.09001 * 109.46924 * 299.99744 * 1 2 3 29 29 H 1.08999 * 109.47229 * 59.99846 * 1 2 3 30 30 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47440 * 240.00211 * 2 1 3 32 32 H 1.08999 * 109.47229 * 120.00154 * 2 1 3 33 33 H 1.08997 * 109.47466 * 60.00071 * 3 2 1 34 34 H 1.08999 * 109.47221 * 300.00160 * 3 2 1 35 35 H 0.97006 * 119.99645 * 334.99938 * 6 4 3 36 36 H 0.96997 * 119.99551 * 180.02562 * 14 13 11 37 37 H 1.07996 * 119.99704 * 0.02562 * 20 19 9 38 38 H 1.08004 * 120.00221 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.99810 * 179.72501 * 22 21 20 40 40 H 1.07997 * 119.99738 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00091 * 179.97438 * 24 23 22 42 42 H 0.97002 * 119.99934 * 359.97438 * 26 25 4 43 43 H 0.97002 * 120.00211 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8532 -0.8427 6 7 4.0589 0.8586 1.2509 7 6 5.2809 0.2921 1.2981 8 8 5.9756 0.2653 0.3044 9 6 5.7839 -0.3080 2.5857 10 1 5.8209 0.4625 3.3557 11 6 4.8543 -1.4107 3.0228 12 1 4.3735 -2.0359 2.2850 13 6 4.6175 -1.6214 4.3647 14 7 5.1221 -0.7990 5.2584 15 14 3.5802 -3.0748 4.9132 16 1 4.4569 -4.2522 5.1374 17 1 2.8778 -2.7331 6.1762 18 1 2.5811 -3.3946 3.8622 19 6 7.1650 -0.8716 2.3714 20 6 8.2501 -0.3048 3.0134 21 6 9.5169 -0.8220 2.8173 22 6 9.6986 -1.9065 1.9795 23 6 8.6135 -2.4734 1.3374 24 6 7.3471 -1.9546 1.5318 25 6 4.0723 2.8580 -0.1244 26 7 3.7462 3.5968 -1.2035 27 8 4.7699 3.3323 0.7469 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.5030 0.8798 2.0456 36 1 4.9558 -0.9474 6.2025 37 1 8.1079 0.5417 3.6689 38 1 10.3646 -0.3794 3.3192 39 1 10.6890 -2.3078 1.8228 40 1 8.7556 -3.3203 0.6826 41 1 6.4993 -2.3972 1.0299 42 1 3.1886 3.2173 -1.9006 43 1 4.0698 4.5077 -1.2834 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412092266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:57 Heat of formation + Delta-G solvation = -95.749954 kcal Electronic energy + Delta-G solvation = -25424.669429 eV Core-core repulsion = 21853.709387 eV Total energy + Delta-G solvation = -3570.960042 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37827 -40.25781 -39.13707 -36.97293 -35.50665 -34.67587 -34.07316 -32.88159 -31.55542 -30.41158 -28.77485 -25.97216 -25.42538 -23.23901 -22.78931 -22.16122 -21.28878 -21.01889 -18.72601 -18.58636 -17.87732 -17.77838 -17.49390 -16.70296 -16.29607 -15.91339 -15.72284 -15.65265 -15.42878 -15.22939 -14.67835 -14.52771 -14.15165 -14.05238 -13.97135 -13.39862 -13.35673 -13.23585 -12.87296 -12.76155 -12.74914 -12.21283 -12.16244 -11.98553 -11.95623 -11.66891 -11.52038 -11.27824 -11.19497 -10.71619 -10.65935 -10.43243 -9.88877 -9.57777 -9.27655 -8.19741 -6.31519 0.73527 0.78767 1.42918 1.45344 1.54167 1.60806 1.91277 2.33227 2.46627 2.77059 3.09002 3.26270 3.70856 3.93717 4.06775 4.19925 4.26032 4.28655 4.38699 4.41747 4.50286 4.60026 4.65892 4.81214 4.86964 4.92704 4.96089 5.02087 5.13053 5.30140 5.34992 5.37655 5.44575 5.52688 5.60063 5.65360 5.76508 5.81419 5.91152 5.94971 6.22871 6.38916 6.45687 6.69776 6.77982 7.35014 7.35825 7.54422 8.89079 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.006093 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.642878 B = 4594.602598 C = 6248.797836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.107 4.107 4 C 0.125 3.875 5 H 0.108 0.892 6 N -0.698 5.698 7 C 0.536 3.464 8 O -0.593 6.593 9 C 0.050 3.950 10 H 0.059 0.941 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.031 3.969 14 N -0.911 5.911 15 Si 0.957 3.043 16 H -0.282 1.282 17 H -0.282 1.282 18 H -0.259 1.259 19 C -0.040 4.040 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.132 4.132 24 C -0.108 4.108 25 C 0.500 3.500 26 N -0.829 5.829 27 O -0.588 6.588 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.409 0.591 36 H 0.266 0.734 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.419 0.581 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 2.820 -12.026 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.145 4.145 4 C 0.016 3.984 5 H 0.126 0.874 6 N -0.348 5.348 7 C 0.326 3.674 8 O -0.474 6.474 9 C 0.029 3.971 10 H 0.077 0.923 11 C -0.549 4.549 12 H 0.078 0.922 13 C -0.171 4.171 14 N -0.548 5.548 15 Si 0.782 3.218 16 H -0.209 1.209 17 H -0.207 1.207 18 H -0.183 1.183 19 C -0.041 4.041 20 C -0.167 4.167 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.126 4.126 25 C 0.283 3.717 26 N -0.395 5.395 27 O -0.467 6.467 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.135 0.865 35 H 0.245 0.755 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.251 0.749 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.318 2.982 -11.894 13.794 hybrid contribution -0.636 -0.239 0.868 1.102 sum -6.954 2.742 -11.026 13.321 Atomic orbital electron populations 1.21722 0.94023 1.02030 1.02541 1.21524 0.97108 0.95542 1.02276 1.21860 0.88498 0.99062 1.05111 1.21071 0.97334 0.90210 0.89794 0.87430 1.45523 1.17844 1.58345 1.13111 1.21304 0.80517 0.74998 0.90621 1.90517 1.57493 1.60910 1.38491 1.18001 0.91071 0.97089 0.90981 0.92318 1.20748 1.26542 1.15527 0.92084 0.92196 1.25668 0.96482 0.98254 0.96660 1.70027 1.45627 1.37320 1.01825 0.85570 0.78850 0.79343 0.78054 1.20855 1.20705 1.18292 1.20164 0.95152 0.94914 0.93907 1.21136 0.93713 1.00753 1.01105 1.21287 0.96325 0.97581 0.99578 1.21289 0.99484 0.97022 0.98246 1.21358 0.92362 1.00672 1.00637 1.20865 0.97245 0.96263 0.98250 1.21581 0.79080 0.89247 0.81772 1.43590 1.55320 1.17807 1.22764 1.90742 1.39479 1.73795 1.42680 0.92753 0.90833 0.92812 0.91454 0.93445 0.90777 0.86482 0.75543 0.92454 0.88335 0.84399 0.83310 0.84202 0.88093 0.74886 0.76159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.13 -2.69 5.82 30.59 0.18 -2.51 16 3 C -0.11 -2.12 4.70 30.59 0.14 -1.97 16 4 C 0.12 3.70 2.38 44.24 0.11 3.81 16 5 H 0.11 3.24 7.58 -2.39 -0.02 3.23 16 6 N -0.70 -27.60 3.96 -446.10 -1.77 -29.37 16 7 C 0.54 25.92 6.87 87.66 0.60 26.52 16 8 O -0.59 -30.71 15.09 -3.03 -0.05 -30.75 16 9 C 0.05 2.60 2.45 -13.03 -0.03 2.57 16 10 H 0.06 3.42 6.99 -2.39 -0.02 3.41 16 11 C -0.51 -26.66 7.46 25.60 0.19 -26.47 16 12 H 0.06 3.08 7.82 -2.91 -0.02 3.06 16 13 C 0.03 1.61 5.45 84.65 0.46 2.08 16 14 N -0.91 -50.89 12.77 21.45 0.27 -50.62 16 15 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 C -0.04 -2.05 4.30 -19.86 -0.09 -2.14 16 20 C -0.15 -7.11 9.67 22.27 0.22 -6.89 16 21 C -0.13 -5.11 10.05 22.27 0.22 -4.88 16 22 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 23 C -0.13 -5.12 10.05 22.27 0.22 -4.90 16 24 C -0.11 -5.04 8.31 22.27 0.19 -4.85 16 25 C 0.50 15.64 7.46 87.66 0.65 16.29 16 26 N -0.83 -15.28 8.74 -173.54 -1.52 -16.80 16 27 O -0.59 -25.57 17.16 -3.02 -0.05 -25.62 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.31 7.75 -2.39 -0.02 1.29 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.12 1.34 7.43 -2.39 -0.02 1.33 16 35 H 0.41 16.07 8.49 -92.70 -0.79 15.28 16 36 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.10 4.80 7.96 -2.91 -0.02 4.77 16 38 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 39 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.10 4.76 7.89 -2.91 -0.02 4.74 16 42 H 0.42 4.20 8.19 -92.71 -0.76 3.44 16 43 H 0.41 6.67 8.93 -92.71 -0.83 5.84 16 Total: -1.00 -75.96 365.70 1.59 -74.37 By element: Atomic # 1 Polarization: 46.45 SS G_CDS: -1.33 Total: 45.12 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 4.00 Total: -9.91 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -3.01 Total: -96.79 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.10 Total: -56.37 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -75.96 1.59 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412092266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.382 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds