Wall clock time and date at job start Tue Mar 31 2020 09:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46841 * 110.99943 * 2 1 4 4 C 1.53037 * 109.52150 * 185.83754 * 3 2 1 5 5 C 1.53116 * 109.27914 * 300.81895 * 4 3 2 6 6 N 1.46503 * 109.52329 * 177.56256 * 5 4 3 7 7 S 1.65596 * 120.00232 * 95.31679 * 6 5 4 8 8 O 1.42108 * 104.27673 * 181.07035 * 7 6 5 9 9 O 1.42101 * 104.27620 * 308.92395 * 7 6 5 10 10 C 1.81391 * 104.45202 * 64.99864 * 7 6 5 11 11 C 1.53003 * 109.47428 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.47079 * 300.00328 * 11 10 7 13 13 C 1.53003 * 109.46776 * 59.99869 * 11 10 7 14 14 C 1.50701 * 109.47107 * 179.97438 * 11 10 7 15 15 H 1.08000 * 120.00290 * 357.69720 * 14 11 10 16 16 C 1.37882 * 119.99523 * 177.69679 * 14 11 10 17 17 N 1.31507 * 120.00506 * 6.58260 * 16 14 11 18 18 Si 1.86800 * 119.99682 * 186.57833 * 16 14 11 19 19 H 1.48499 * 109.46960 * 84.99719 * 18 16 14 20 20 H 1.48502 * 109.47247 * 204.99614 * 18 16 14 21 21 H 1.48502 * 109.47301 * 325.00103 * 18 16 14 22 22 C 1.53120 * 109.16158 * 57.65525 * 5 4 3 23 23 C 1.46854 * 110.99665 * 124.20683 * 2 1 3 24 24 H 1.08998 * 109.47209 * 295.79299 * 1 2 3 25 25 H 1.09004 * 109.46983 * 175.79261 * 1 2 3 26 26 H 1.09000 * 109.46738 * 55.79373 * 1 2 3 27 27 H 1.09003 * 109.46354 * 305.85095 * 3 2 1 28 28 H 1.08996 * 109.46692 * 65.82406 * 3 2 1 29 29 H 1.09000 * 109.50657 * 180.87621 * 4 3 2 30 30 H 1.08998 * 109.53979 * 60.77928 * 4 3 2 31 31 H 1.09003 * 109.52376 * 297.74695 * 5 4 3 32 32 H 0.97005 * 119.99684 * 275.31248 * 6 5 4 33 33 H 1.09001 * 109.47384 * 299.99898 * 10 7 6 34 34 H 1.09003 * 109.47103 * 59.99858 * 10 7 6 35 35 H 1.08997 * 109.47366 * 66.66660 * 12 11 10 36 36 H 1.09000 * 109.46941 * 186.66571 * 12 11 10 37 37 H 1.09003 * 109.47135 * 306.66281 * 12 11 10 38 38 H 1.09001 * 109.47010 * 60.00571 * 13 11 10 39 39 H 1.09001 * 109.47018 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47480 * 300.00406 * 13 11 10 41 41 H 0.96998 * 120.00421 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.50339 * 182.40488 * 22 5 4 43 43 H 1.09001 * 109.49950 * 62.28911 * 22 5 4 44 44 H 1.08998 * 109.46416 * 294.17398 * 23 2 1 45 45 H 1.08998 * 109.46492 * 54.14748 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1188 0.5369 1.0144 6 7 5.5716 0.4489 0.8480 7 16 6.5600 1.5354 1.6127 8 8 7.8701 1.1636 1.2064 9 8 6.0187 2.8036 1.2693 10 6 6.3219 1.1987 3.3791 11 6 7.1934 2.1500 4.2017 12 6 8.6640 1.9392 3.8360 13 6 6.7951 3.5961 3.8998 14 6 6.9950 1.8707 5.6693 15 1 6.2878 1.1180 5.9850 16 6 7.7166 2.5761 6.6089 17 7 8.4802 3.5792 6.2345 18 14 7.6092 2.1071 8.4139 19 1 8.5746 1.0157 8.6999 20 1 7.9350 3.2886 9.2525 21 1 6.2327 1.6442 8.7240 22 6 3.5181 -0.8715 1.0210 23 6 1.9952 -0.7708 1.1339 24 1 -0.3633 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0754 26 1 -0.3633 0.5777 -0.8499 27 1 1.5635 1.9257 -0.8330 28 1 1.7325 1.8608 0.9375 29 1 3.9100 2.3511 -0.1310 30 1 3.7820 0.8570 -1.0905 31 1 3.8887 1.0355 1.9561 32 1 5.9546 -0.2460 0.2899 33 1 5.2741 1.3485 3.6396 34 1 6.6061 0.1686 3.5942 35 1 8.8311 2.2543 2.8061 36 1 9.2924 2.5294 4.5030 37 1 8.9163 0.8837 3.9386 38 1 5.7474 3.7463 4.1604 39 1 7.4156 4.2738 4.4862 40 1 6.9381 3.7984 2.8384 41 1 8.9875 4.0757 6.8955 42 1 3.9098 -1.4302 1.8709 43 1 3.7814 -1.3836 0.0955 44 1 1.7325 -0.2708 2.0661 45 1 1.5634 -1.7715 1.1244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413268729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:25 Heat of formation + Delta-G solvation = -78.274233 kcal Electronic energy + Delta-G solvation = -24696.518764 eV Core-core repulsion = 21261.760478 eV Total energy + Delta-G solvation = -3434.758286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30351 -36.51424 -36.27920 -35.51918 -35.21878 -31.69284 -31.08011 -31.00031 -26.66902 -26.16303 -25.72651 -25.23670 -23.31063 -22.64560 -20.26816 -19.49993 -18.67683 -17.28739 -16.65954 -15.92975 -15.48633 -15.32993 -15.23189 -14.79244 -14.73667 -14.55941 -13.95803 -13.59226 -13.09635 -13.04285 -12.62234 -12.60175 -12.51612 -12.09323 -12.01979 -11.92103 -11.43377 -11.34259 -11.30230 -11.20811 -11.07291 -11.02233 -10.91395 -10.71839 -10.52372 -10.36625 -10.28987 -10.09765 -9.67283 -9.60519 -9.21895 -8.71103 -8.55710 -8.39191 -6.05271 -4.16831 0.88472 3.21352 3.24939 3.32036 3.33302 3.72073 4.29381 4.37614 4.56415 4.67789 4.74842 4.88943 4.96592 5.10645 5.16268 5.19652 5.26177 5.30956 5.37237 5.47152 5.61672 5.64526 5.67144 5.71047 5.79629 5.84251 5.96026 6.19253 6.31001 6.38140 6.68000 6.77795 6.82182 6.86143 6.90557 7.02640 7.17282 7.30277 7.47887 7.66351 7.96723 8.08791 8.32458 8.81414 9.48319 10.95841 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004214 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.222642 B = 6642.432528 C = 7391.627966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.135 4.135 5 C 0.153 3.847 6 N -1.125 6.125 7 S 2.593 3.407 8 O -0.966 6.966 9 O -0.963 6.963 10 C -0.583 4.583 11 C 0.082 3.918 12 C -0.161 4.161 13 C -0.163 4.163 14 C -0.503 4.503 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.882 5.882 18 Si 0.895 3.105 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.123 4.123 23 C 0.055 3.945 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.411 0.589 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.026 0.974 36 H 0.094 0.906 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.097 0.903 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 -7.820 -10.627 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.175 4.175 5 C 0.046 3.954 6 N -0.880 5.880 7 S 2.691 3.309 8 O -0.957 6.957 9 O -0.952 6.952 10 C -0.717 4.717 11 C 0.080 3.920 12 C -0.218 4.218 13 C -0.221 4.221 14 C -0.542 4.542 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.163 4.163 23 C -0.073 4.073 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.244 0.756 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.045 0.955 36 H 0.112 0.888 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.065 -7.114 -11.337 18.019 hybrid contribution -0.545 -0.597 2.055 2.208 sum -12.610 -7.711 -9.282 17.453 Atomic orbital electron populations 1.22348 0.87322 1.02138 1.00564 1.61972 1.07544 1.14153 1.43378 1.22115 0.95435 0.88784 1.00998 1.22155 0.93871 1.02086 0.99358 1.20746 0.79450 0.96556 0.98680 1.55940 1.15852 1.51021 1.65217 1.05618 0.73245 0.73871 0.78187 1.93557 1.37013 1.83269 1.81833 1.93537 1.79236 1.39816 1.82657 1.30550 1.09950 1.10533 1.20645 1.17928 0.89946 0.89538 0.94617 1.22207 0.99552 1.00773 0.99312 1.22304 1.01089 0.99859 0.98865 1.20931 1.23445 1.20806 0.89036 0.92343 1.24935 0.95276 0.94564 0.98924 1.69806 1.29056 1.19198 1.33929 0.86570 0.78405 0.78067 0.84706 1.20527 1.21180 1.20045 1.21927 0.94379 0.96496 1.03468 1.22088 0.95033 0.98528 0.91688 0.95600 0.91427 0.91377 0.90367 0.94398 0.89481 0.90623 0.90109 0.75579 0.86713 0.86293 0.95499 0.88757 0.94595 0.94600 0.88440 0.95378 0.92699 0.90468 0.90319 0.94390 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.07 0.58 0.77 16 2 N -0.55 -5.27 4.91 -242.96 -1.19 -6.46 16 3 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 4 C -0.14 -1.60 5.70 -26.65 -0.15 -1.75 16 5 C 0.15 1.85 2.62 -67.81 -0.18 1.67 16 6 N -1.13 -15.11 5.37 -4.78 -0.03 -15.14 16 7 S 2.59 47.48 4.41 -107.50 -0.47 47.01 16 8 O -0.97 -20.28 15.84 -57.54 -0.91 -21.20 16 9 O -0.96 -19.80 14.82 -57.54 -0.85 -20.65 16 10 C -0.58 -11.26 4.90 37.16 0.18 -11.07 16 11 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 12 C -0.16 -3.96 7.58 37.16 0.28 -3.68 16 13 C -0.16 -4.01 7.79 37.16 0.29 -3.72 16 14 C -0.50 -13.13 8.01 -34.44 -0.28 -13.41 16 15 H 0.06 1.48 7.75 -52.49 -0.41 1.08 16 16 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 17 N -0.88 -24.01 9.39 55.43 0.52 -23.49 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.12 -1.19 5.63 -26.65 -0.15 -1.34 16 23 C 0.06 0.51 5.46 -3.83 -0.02 0.48 16 24 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 1.18 7.51 -51.93 -0.39 0.79 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.00 7.16 -51.93 -0.37 0.63 16 32 H 0.41 4.69 8.80 -34.47 -0.30 4.38 16 33 H 0.11 2.00 7.45 -51.92 -0.39 1.61 16 34 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 35 H 0.03 0.63 5.96 -51.93 -0.31 0.32 16 36 H 0.09 2.50 5.99 -51.93 -0.31 2.19 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 2.59 6.01 -51.93 -0.31 2.28 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -31.19 350.09 -10.02 -41.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.70 Total: 5.94 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: 0.36 Total: -27.99 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.70 Total: -45.09 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.76 Total: -41.85 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 47.48 SS G_CDS: -0.47 Total: 47.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.19 -10.02 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413268729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.067 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds