Wall clock time and date at job start Tue Mar 31 2020 09:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46841 * 110.99943 * 2 1 4 4 C 1.53037 * 109.52150 * 185.83754 * 3 2 1 5 5 C 1.53116 * 109.27914 * 300.81895 * 4 3 2 6 6 N 1.46503 * 109.52329 * 177.56256 * 5 4 3 7 7 S 1.65596 * 120.00232 * 95.31679 * 6 5 4 8 8 O 1.42108 * 104.27673 * 181.07035 * 7 6 5 9 9 O 1.42101 * 104.27620 * 308.92395 * 7 6 5 10 10 C 1.81391 * 104.45202 * 64.99864 * 7 6 5 11 11 C 1.53003 * 109.47428 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.47079 * 300.00328 * 11 10 7 13 13 C 1.53003 * 109.46776 * 59.99869 * 11 10 7 14 14 C 1.50701 * 109.47107 * 179.97438 * 11 10 7 15 15 H 1.08000 * 120.00290 * 357.69720 * 14 11 10 16 16 C 1.37882 * 119.99523 * 177.69679 * 14 11 10 17 17 N 1.31507 * 120.00506 * 6.58260 * 16 14 11 18 18 Si 1.86800 * 119.99682 * 186.57833 * 16 14 11 19 19 H 1.48499 * 109.46960 * 84.99719 * 18 16 14 20 20 H 1.48502 * 109.47247 * 204.99614 * 18 16 14 21 21 H 1.48502 * 109.47301 * 325.00103 * 18 16 14 22 22 C 1.53120 * 109.16158 * 57.65525 * 5 4 3 23 23 C 1.46854 * 110.99665 * 124.20683 * 2 1 3 24 24 H 1.08998 * 109.47209 * 295.79299 * 1 2 3 25 25 H 1.09004 * 109.46983 * 175.79261 * 1 2 3 26 26 H 1.09000 * 109.46738 * 55.79373 * 1 2 3 27 27 H 1.09003 * 109.46354 * 305.85095 * 3 2 1 28 28 H 1.08996 * 109.46692 * 65.82406 * 3 2 1 29 29 H 1.09000 * 109.50657 * 180.87621 * 4 3 2 30 30 H 1.08998 * 109.53979 * 60.77928 * 4 3 2 31 31 H 1.09003 * 109.52376 * 297.74695 * 5 4 3 32 32 H 0.97005 * 119.99684 * 275.31248 * 6 5 4 33 33 H 1.09001 * 109.47384 * 299.99898 * 10 7 6 34 34 H 1.09003 * 109.47103 * 59.99858 * 10 7 6 35 35 H 1.08997 * 109.47366 * 66.66660 * 12 11 10 36 36 H 1.09000 * 109.46941 * 186.66571 * 12 11 10 37 37 H 1.09003 * 109.47135 * 306.66281 * 12 11 10 38 38 H 1.09001 * 109.47010 * 60.00571 * 13 11 10 39 39 H 1.09001 * 109.47018 * 179.97438 * 13 11 10 40 40 H 1.08995 * 109.47480 * 300.00406 * 13 11 10 41 41 H 0.96998 * 120.00421 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.50339 * 182.40488 * 22 5 4 43 43 H 1.09001 * 109.49950 * 62.28911 * 22 5 4 44 44 H 1.08998 * 109.46416 * 294.17398 * 23 2 1 45 45 H 1.08998 * 109.46492 * 54.14748 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1188 0.5369 1.0144 6 7 5.5716 0.4489 0.8480 7 16 6.5600 1.5354 1.6127 8 8 7.8701 1.1636 1.2064 9 8 6.0187 2.8036 1.2693 10 6 6.3219 1.1987 3.3791 11 6 7.1934 2.1500 4.2017 12 6 8.6640 1.9392 3.8360 13 6 6.7951 3.5961 3.8998 14 6 6.9950 1.8707 5.6693 15 1 6.2878 1.1180 5.9850 16 6 7.7166 2.5761 6.6089 17 7 8.4802 3.5792 6.2345 18 14 7.6092 2.1071 8.4139 19 1 8.5746 1.0157 8.6999 20 1 7.9350 3.2886 9.2525 21 1 6.2327 1.6442 8.7240 22 6 3.5181 -0.8715 1.0210 23 6 1.9952 -0.7708 1.1339 24 1 -0.3633 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0754 26 1 -0.3633 0.5777 -0.8499 27 1 1.5635 1.9257 -0.8330 28 1 1.7325 1.8608 0.9375 29 1 3.9100 2.3511 -0.1310 30 1 3.7820 0.8570 -1.0905 31 1 3.8887 1.0355 1.9561 32 1 5.9546 -0.2460 0.2899 33 1 5.2741 1.3485 3.6396 34 1 6.6061 0.1686 3.5942 35 1 8.8311 2.2543 2.8061 36 1 9.2924 2.5294 4.5030 37 1 8.9163 0.8837 3.9386 38 1 5.7474 3.7463 4.1604 39 1 7.4156 4.2738 4.4862 40 1 6.9381 3.7984 2.8384 41 1 8.9875 4.0757 6.8955 42 1 3.9098 -1.4302 1.8709 43 1 3.7814 -1.3836 0.0955 44 1 1.7325 -0.2708 2.0661 45 1 1.5634 -1.7715 1.1244 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413268729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:24 Heat of formation + Delta-G solvation = -100.799597 kcal Electronic energy + Delta-G solvation = -24697.495537 eV Core-core repulsion = 21261.760478 eV Total energy + Delta-G solvation = -3435.735059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11878 -38.13075 -38.06570 -36.88526 -36.39159 -33.64729 -31.99496 -31.80562 -28.34238 -27.69966 -27.26158 -26.90286 -24.10221 -23.47044 -21.52303 -20.91436 -20.13135 -18.73948 -17.88448 -17.65005 -16.89001 -16.62747 -16.50297 -16.00839 -15.83154 -15.44901 -15.08280 -14.78683 -14.67648 -14.47076 -14.43025 -13.78178 -13.45524 -13.33230 -13.30270 -12.99857 -12.99716 -12.86490 -12.78670 -12.70527 -12.50975 -12.22933 -12.16804 -12.13039 -12.09233 -11.99581 -11.79751 -11.58651 -11.43622 -11.30986 -10.68185 -10.39533 -10.27692 -9.26837 -8.03826 -6.21940 -0.59187 1.44209 1.45997 1.53768 1.90555 2.44001 2.86748 3.02643 3.18222 3.33907 3.69181 3.86920 3.94813 4.05882 4.11484 4.21368 4.31531 4.40713 4.54782 4.59108 4.60231 4.63067 4.75444 4.84309 4.85608 4.90143 4.94551 4.98705 5.02697 5.07739 5.08159 5.18326 5.26965 5.37053 5.43042 5.49056 5.64177 5.96646 6.10454 6.11399 6.14733 6.18770 6.34246 6.82593 7.46129 8.95928 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004214 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.222642 B = 6642.432528 C = 7391.627966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.553 5.553 3 C 0.057 3.943 4 C -0.135 4.135 5 C 0.144 3.856 6 N -1.107 6.107 7 S 2.612 3.388 8 O -0.995 6.995 9 O -0.988 6.988 10 C -0.587 4.587 11 C 0.069 3.931 12 C -0.157 4.157 13 C -0.159 4.159 14 C -0.518 4.518 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.907 5.907 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.118 4.118 23 C 0.053 3.947 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.424 0.576 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.533 -9.736 -10.774 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.071 4.071 4 C -0.175 4.175 5 C 0.037 3.963 6 N -0.866 5.866 7 S 2.709 3.291 8 O -0.985 6.985 9 O -0.978 6.978 10 C -0.719 4.719 11 C 0.067 3.933 12 C -0.215 4.215 13 C -0.217 4.217 14 C -0.557 4.557 15 H 0.082 0.918 16 C -0.181 4.181 17 N -0.545 5.545 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.157 4.157 23 C -0.075 4.075 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.260 0.740 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.777 -9.041 -11.484 20.086 hybrid contribution -0.061 -0.006 2.035 2.036 sum -13.838 -9.047 -9.449 19.043 Atomic orbital electron populations 1.22408 0.86095 1.03080 1.00845 1.61994 1.08706 1.13469 1.43659 1.22067 0.94307 0.89594 1.01163 1.22115 0.95074 1.00784 0.99492 1.21012 0.78206 0.98452 0.98657 1.55466 1.16182 1.50515 1.64471 1.04761 0.72793 0.73786 0.77727 1.93512 1.39166 1.83717 1.82103 1.93505 1.79582 1.41847 1.82817 1.30474 1.10125 1.10357 1.20948 1.17924 0.90357 0.90166 0.94865 1.22146 0.99953 1.00680 0.98749 1.22227 1.00659 1.00158 0.98639 1.21281 1.23406 1.20710 0.90261 0.91835 1.25673 0.95183 0.94570 1.02703 1.69949 1.29698 1.19986 1.34914 0.85645 0.78627 0.77567 0.80230 1.20231 1.21384 1.19193 1.21916 0.94704 0.94694 1.04404 1.22156 0.94572 0.99376 0.91419 0.95606 0.90222 0.90787 0.89486 0.94895 0.91657 0.90216 0.90447 0.74029 0.84856 0.84369 0.95341 0.91144 0.93887 0.94281 0.90924 0.94950 0.92909 0.89315 0.89597 0.94655 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.59 127.69 1.22 1.53 16 2 N -0.55 -9.34 4.91 -922.58 -4.53 -13.87 16 3 C 0.06 1.09 5.46 86.33 0.47 1.56 16 4 C -0.14 -3.03 5.70 30.65 0.17 -2.85 16 5 C 0.14 3.19 2.62 45.07 0.12 3.31 16 6 N -1.11 -27.75 5.37 -169.05 -0.91 -28.66 16 7 S 2.61 93.30 4.41 -56.49 -0.25 93.05 16 8 O -0.99 -41.11 15.84 -127.65 -2.02 -43.13 16 9 O -0.99 -40.39 14.82 -127.65 -1.89 -42.29 16 10 C -0.59 -21.80 4.90 71.98 0.35 -21.44 16 11 C 0.07 3.30 0.52 -52.93 -0.03 3.28 16 12 C -0.16 -7.81 7.58 71.98 0.55 -7.26 16 13 C -0.16 -7.90 7.79 71.98 0.56 -7.33 16 14 C -0.52 -26.70 8.01 25.60 0.20 -26.50 16 15 H 0.06 3.13 7.75 -2.91 -0.02 3.11 16 16 C 0.02 0.96 5.09 84.66 0.43 1.39 16 17 N -0.91 -50.13 9.39 21.45 0.20 -49.93 16 18 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 C -0.12 -1.94 5.63 30.65 0.17 -1.77 16 23 C 0.05 0.82 5.46 86.32 0.47 1.30 16 24 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 27 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.75 7.51 -2.39 -0.02 1.73 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.78 7.16 -2.39 -0.02 1.77 16 32 H 0.42 8.73 8.80 -96.74 -0.85 7.88 16 33 H 0.13 4.40 7.45 -2.39 -0.02 4.38 16 34 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 35 H 0.03 1.35 5.96 -2.39 -0.01 1.34 16 36 H 0.07 3.81 5.99 -2.39 -0.01 3.80 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 3.96 6.01 -2.39 -0.01 3.94 16 40 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 41 H 0.26 13.86 8.31 -92.71 -0.77 13.08 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 Total: -1.00 -66.08 350.09 -2.56 -68.63 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.12 Total: 27.19 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 4.70 Total: -54.80 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -5.24 Total: -92.45 kcal Atomic # 8 Polarization: -81.50 SS G_CDS: -3.91 Total: -85.42 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 93.30 SS G_CDS: -0.25 Total: 93.05 kcal Total: -66.08 -2.56 -68.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413268729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.167 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds