Wall clock time and date at job start Tue Mar 31 2020 08:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.53007 * 109.47094 * 176.51938 * 3 2 1 5 5 H 1.09003 * 109.87035 * 304.35381 * 4 3 2 6 6 C 1.54323 * 110.01126 * 65.45080 * 4 3 2 7 7 C 1.55154 * 102.94183 * 141.68522 * 6 4 3 8 8 C 1.55133 * 101.48411 * 324.33010 * 7 6 4 9 9 N 1.47012 * 109.88210 * 183.33713 * 4 3 2 10 10 S 1.65610 * 125.64990 * 61.44845 * 9 4 3 11 11 O 1.42099 * 106.40079 * 342.44948 * 10 9 4 12 12 O 1.42100 * 106.39996 * 209.52650 * 10 9 4 13 13 N 1.65592 * 107.21696 * 95.98841 * 10 9 4 14 14 C 1.46505 * 120.00169 * 270.00001 * 13 10 9 15 15 C 1.46504 * 120.00166 * 90.00186 * 13 10 9 16 16 H 1.09003 * 109.46920 * 359.97438 * 15 13 10 17 17 C 1.53003 * 109.47091 * 239.99802 * 15 13 10 18 18 C 1.50700 * 109.47159 * 119.99923 * 15 13 10 19 19 H 1.07993 * 120.00007 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99856 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99833 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99859 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47366 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46994 * 119.99800 * 22 20 18 25 25 H 1.48497 * 109.46979 * 239.99602 * 22 20 18 26 26 H 1.09006 * 109.47306 * 60.00072 * 1 2 3 27 27 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47200 * 299.99874 * 1 2 3 29 29 H 1.09005 * 109.47200 * 240.00126 * 2 1 3 30 30 H 1.08993 * 109.47306 * 120.00301 * 2 1 3 31 31 H 1.08994 * 109.46984 * 56.51962 * 3 2 1 32 32 H 1.08998 * 109.47160 * 296.51796 * 3 2 1 33 33 H 1.09005 * 110.71464 * 260.04600 * 6 4 3 34 34 H 1.09000 * 110.72171 * 23.13874 * 6 4 3 35 35 H 1.08998 * 111.00324 * 82.57057 * 7 6 4 36 36 H 1.09002 * 111.00279 * 206.38700 * 7 6 4 37 37 H 1.09003 * 110.49567 * 278.45641 * 8 7 6 38 38 H 1.08996 * 110.34106 * 156.06247 * 8 7 6 39 39 H 1.09002 * 109.47013 * 270.00010 * 14 13 10 40 40 H 1.08995 * 109.46817 * 30.00337 * 14 13 10 41 41 H 1.08999 * 109.47111 * 149.99979 * 14 13 10 42 42 H 1.09000 * 109.47162 * 179.97438 * 17 15 13 43 43 H 1.08992 * 109.47162 * 300.00141 * 17 15 13 44 44 H 1.09009 * 109.47166 * 60.00143 * 17 15 13 45 45 H 0.97003 * 119.99479 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5675 1.4434 0.0876 5 1 3.8886 0.8824 0.9652 6 6 4.1699 0.8147 -1.1865 7 6 5.4203 1.6945 -1.4505 8 6 4.9143 3.0918 -1.0050 9 7 4.0629 2.8252 0.1686 10 16 3.7160 3.9057 1.3747 11 8 2.5697 3.4023 2.0470 12 8 3.7658 5.1968 0.7833 13 7 4.9622 3.8417 2.4634 14 6 4.9064 2.9026 3.5864 15 6 6.1205 4.7244 2.3035 16 1 5.9841 5.3462 1.4187 17 6 7.3865 3.8803 2.1428 18 6 6.2540 5.6034 3.5203 19 1 5.5470 5.5133 4.3317 20 6 7.2788 6.5226 3.5976 21 7 8.1400 6.6319 2.6097 22 14 7.4438 7.6127 5.1055 23 1 6.3578 7.2951 6.0672 24 1 8.7602 7.3715 5.7490 25 1 7.3450 9.0377 4.6994 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6266 1.9740 0.8571 32 1 1.7285 1.9380 -0.9195 33 1 4.4582 -0.2210 -1.0062 34 1 3.4674 0.8788 -2.0175 35 1 6.2633 1.3681 -0.8415 36 1 5.6819 1.6942 -2.5086 37 1 4.3307 3.5574 -1.7992 38 1 5.7545 3.7282 -0.7274 39 1 4.4276 3.3840 4.4391 40 1 4.3321 2.0228 3.2960 41 1 5.9180 2.6023 3.8595 42 1 8.2483 4.5369 2.0235 43 1 7.5231 3.2581 3.0273 44 1 7.2900 3.2444 1.2627 45 1 8.8611 7.2784 2.6643 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414364318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:26 Heat of formation + Delta-G solvation = -87.515437 kcal Electronic energy + Delta-G solvation = -25200.107348 eV Core-core repulsion = 21764.948333 eV Total energy + Delta-G solvation = -3435.159015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -38.82681 -36.69244 -36.12909 -35.19828 -34.53431 -32.56734 -30.76441 -29.71456 -29.07842 -25.58720 -25.46633 -25.12845 -22.16049 -21.71707 -20.62162 -20.49587 -18.27043 -17.33154 -16.92859 -16.27366 -15.91009 -15.16084 -15.01733 -14.59158 -13.98796 -13.76757 -13.58373 -13.43836 -13.13559 -13.02272 -12.83838 -12.63259 -12.13644 -11.97072 -11.79669 -11.71348 -11.50223 -11.35606 -11.27704 -11.21101 -11.09278 -10.97348 -10.94733 -10.82309 -10.77052 -10.64561 -10.47078 -10.27637 -10.23960 -9.99758 -9.24726 -8.75559 -8.44928 -7.94514 -6.07098 -4.13271 1.18303 3.28091 3.36218 3.40595 3.51438 4.08297 4.40445 4.53133 4.65074 4.78740 4.97806 5.04451 5.13683 5.16157 5.24510 5.37398 5.46642 5.55903 5.61510 5.69944 5.77315 5.79781 5.82859 5.89106 5.94516 5.97850 6.14760 6.16383 6.22912 6.24322 6.34991 6.46990 6.52541 6.59246 6.68704 6.79544 6.83528 7.02363 7.48194 7.64457 7.79531 8.04516 8.28298 8.89287 9.52524 10.98688 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.004680 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.061207 B = 5981.676940 C = 6487.162659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.156 3.844 5 H 0.070 0.930 6 C -0.122 4.122 7 C -0.130 4.130 8 C 0.122 3.878 9 N -1.019 6.019 10 S 2.790 3.210 11 O -0.989 6.989 12 O -0.972 6.972 13 N -0.990 5.990 14 C 0.112 3.888 15 C 0.267 3.733 16 H 0.057 0.943 17 C -0.147 4.147 18 C -0.518 4.518 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.033 0.967 44 H 0.010 0.990 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -14.234 -7.595 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.194 4.194 4 C 0.049 3.951 5 H 0.088 0.912 6 C -0.161 4.161 7 C -0.169 4.169 8 C -0.004 4.004 9 N -0.857 5.857 10 S 2.801 3.199 11 O -0.974 6.974 12 O -0.956 6.956 13 N -0.832 5.832 14 C -0.034 4.034 15 C 0.164 3.836 16 H 0.075 0.925 17 C -0.207 4.207 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.408 -13.488 -7.518 17.126 hybrid contribution 0.576 0.415 0.819 1.084 sum -6.832 -13.073 -6.699 16.200 Atomic orbital electron populations 1.21772 0.95966 1.01224 1.02035 1.21430 0.95835 0.96444 1.01803 1.22401 0.95034 0.97780 1.04156 1.21251 0.93297 0.82035 0.98472 0.91243 1.22692 0.97240 0.99098 0.97090 1.22812 0.97750 0.94766 1.01539 1.21955 0.93626 0.97254 0.87523 1.59426 1.63112 1.25516 1.37607 1.01671 0.73306 0.72622 0.72316 1.93489 1.48275 1.81454 1.74144 1.93595 1.86904 1.37374 1.77683 1.57786 1.38450 1.49464 1.37543 1.21115 1.02132 0.90681 0.89522 1.18739 0.79958 0.86415 0.98506 0.92502 1.22115 1.02480 0.99076 0.96990 1.21374 1.12284 1.18660 1.03489 0.91928 1.24909 0.95524 0.96935 0.96539 1.69868 1.15965 1.35771 1.31331 0.86443 0.77864 0.80402 0.82728 1.19727 1.20990 1.20878 0.92925 0.92995 0.92466 0.92133 0.91946 0.88740 0.91804 0.90638 0.90751 0.90537 0.90406 0.91761 0.90373 0.93327 0.93464 0.91087 0.88903 0.94801 0.97064 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.16 5.71 -26.73 -0.15 -1.32 16 3 C -0.15 -1.97 4.68 -26.73 -0.13 -2.09 16 4 C 0.16 2.01 3.07 -66.96 -0.21 1.80 16 5 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.12 -1.21 5.59 -24.90 -0.14 -1.35 16 7 C -0.13 -1.38 7.10 -24.46 -0.17 -1.56 16 8 C 0.12 1.73 7.05 -2.41 -0.02 1.71 16 9 N -1.02 -16.24 3.46 -104.29 -0.36 -16.60 16 10 S 2.79 56.86 6.23 -107.50 -0.67 56.19 16 11 O -0.99 -20.56 14.37 -57.17 -0.82 -21.38 16 12 O -0.97 -23.48 16.37 -57.17 -0.94 -24.42 16 13 N -0.99 -21.05 3.12 -115.84 -0.36 -21.41 16 14 C 0.11 2.05 9.53 59.85 0.57 2.62 16 15 C 0.27 6.58 2.62 -69.08 -0.18 6.40 16 16 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 17 C -0.15 -3.32 8.95 37.16 0.33 -2.99 16 18 C -0.52 -14.11 8.37 -34.44 -0.29 -14.40 16 19 H 0.06 1.71 7.64 -52.49 -0.40 1.31 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 22 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.51 7.53 -51.93 -0.39 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.46 5.68 -51.93 -0.30 1.17 16 32 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.67 7.80 -51.93 -0.40 0.26 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 41 H 0.07 1.25 6.43 -51.93 -0.33 0.92 16 42 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 43 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 44 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -31.31 360.20 -10.10 -41.41 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.88 Total: -0.67 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.11 Total: -10.62 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.09 Total: -62.17 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.76 Total: -45.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.67 Total: 56.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.31 -10.10 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414364318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.110 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds