Wall clock time and date at job start Tue Mar 31 2020 08:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47109 * 2 1 4 4 C 1.53007 * 109.47094 * 176.51938 * 3 2 1 5 5 H 1.09003 * 109.87035 * 304.35381 * 4 3 2 6 6 C 1.54323 * 110.01126 * 65.45080 * 4 3 2 7 7 C 1.55154 * 102.94183 * 141.68522 * 6 4 3 8 8 C 1.55133 * 101.48411 * 324.33010 * 7 6 4 9 9 N 1.47012 * 109.88210 * 183.33713 * 4 3 2 10 10 S 1.65610 * 125.64990 * 61.44845 * 9 4 3 11 11 O 1.42099 * 106.40079 * 342.44948 * 10 9 4 12 12 O 1.42100 * 106.39996 * 209.52650 * 10 9 4 13 13 N 1.65592 * 107.21696 * 95.98841 * 10 9 4 14 14 C 1.46505 * 120.00169 * 270.00001 * 13 10 9 15 15 C 1.46504 * 120.00166 * 90.00186 * 13 10 9 16 16 H 1.09003 * 109.46920 * 359.97438 * 15 13 10 17 17 C 1.53003 * 109.47091 * 239.99802 * 15 13 10 18 18 C 1.50700 * 109.47159 * 119.99923 * 15 13 10 19 19 H 1.07993 * 120.00007 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99856 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99833 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99859 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47366 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46994 * 119.99800 * 22 20 18 25 25 H 1.48497 * 109.46979 * 239.99602 * 22 20 18 26 26 H 1.09006 * 109.47306 * 60.00072 * 1 2 3 27 27 H 1.09007 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47200 * 299.99874 * 1 2 3 29 29 H 1.09005 * 109.47200 * 240.00126 * 2 1 3 30 30 H 1.08993 * 109.47306 * 120.00301 * 2 1 3 31 31 H 1.08994 * 109.46984 * 56.51962 * 3 2 1 32 32 H 1.08998 * 109.47160 * 296.51796 * 3 2 1 33 33 H 1.09005 * 110.71464 * 260.04600 * 6 4 3 34 34 H 1.09000 * 110.72171 * 23.13874 * 6 4 3 35 35 H 1.08998 * 111.00324 * 82.57057 * 7 6 4 36 36 H 1.09002 * 111.00279 * 206.38700 * 7 6 4 37 37 H 1.09003 * 110.49567 * 278.45641 * 8 7 6 38 38 H 1.08996 * 110.34106 * 156.06247 * 8 7 6 39 39 H 1.09002 * 109.47013 * 270.00010 * 14 13 10 40 40 H 1.08995 * 109.46817 * 30.00337 * 14 13 10 41 41 H 1.08999 * 109.47111 * 149.99979 * 14 13 10 42 42 H 1.09000 * 109.47162 * 179.97438 * 17 15 13 43 43 H 1.08992 * 109.47162 * 300.00141 * 17 15 13 44 44 H 1.09009 * 109.47166 * 60.00143 * 17 15 13 45 45 H 0.97003 * 119.99479 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5675 1.4434 0.0876 5 1 3.8886 0.8824 0.9652 6 6 4.1699 0.8147 -1.1865 7 6 5.4203 1.6945 -1.4505 8 6 4.9143 3.0918 -1.0050 9 7 4.0629 2.8252 0.1686 10 16 3.7160 3.9057 1.3747 11 8 2.5697 3.4023 2.0470 12 8 3.7658 5.1968 0.7833 13 7 4.9622 3.8417 2.4634 14 6 4.9064 2.9026 3.5864 15 6 6.1205 4.7244 2.3035 16 1 5.9841 5.3462 1.4187 17 6 7.3865 3.8803 2.1428 18 6 6.2540 5.6034 3.5203 19 1 5.5470 5.5133 4.3317 20 6 7.2788 6.5226 3.5976 21 7 8.1400 6.6319 2.6097 22 14 7.4438 7.6127 5.1055 23 1 6.3578 7.2951 6.0672 24 1 8.7602 7.3715 5.7490 25 1 7.3450 9.0377 4.6994 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6266 1.9740 0.8571 32 1 1.7285 1.9380 -0.9195 33 1 4.4582 -0.2210 -1.0062 34 1 3.4674 0.8788 -2.0175 35 1 6.2633 1.3681 -0.8415 36 1 5.6819 1.6942 -2.5086 37 1 4.3307 3.5574 -1.7992 38 1 5.7545 3.7282 -0.7274 39 1 4.4276 3.3840 4.4391 40 1 4.3321 2.0228 3.2960 41 1 5.9180 2.6023 3.8595 42 1 8.2483 4.5369 2.0235 43 1 7.5231 3.2581 3.0273 44 1 7.2900 3.2444 1.2627 45 1 8.8611 7.2784 2.6643 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414364318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:25 Heat of formation + Delta-G solvation = -107.733893 kcal Electronic energy + Delta-G solvation = -25200.984086 eV Core-core repulsion = 21764.948333 eV Total energy + Delta-G solvation = -3436.035753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85832 -38.39549 -37.90901 -36.91975 -35.43447 -34.55107 -31.81864 -30.95423 -30.62130 -27.31963 -27.02820 -26.41866 -23.24741 -22.66072 -22.39212 -21.43805 -19.77471 -18.81699 -18.59276 -18.16560 -17.30600 -16.68588 -16.28822 -15.94576 -15.37125 -15.14446 -14.83158 -14.73223 -14.55532 -14.40462 -14.08835 -13.72876 -13.63469 -13.42448 -13.18415 -13.16080 -13.02056 -12.92409 -12.82856 -12.72575 -12.61827 -12.48691 -12.24584 -12.17719 -11.99486 -11.94538 -11.74409 -11.72595 -11.48174 -11.21440 -11.16065 -10.53555 -9.98634 -9.67810 -8.14145 -6.27852 -0.39980 1.39432 1.42195 1.52978 2.02664 2.40927 2.55734 3.13827 3.24208 3.62333 3.84995 3.91223 4.03988 4.20972 4.25978 4.29332 4.45716 4.57474 4.63053 4.64162 4.72707 4.78647 4.92955 4.94534 4.97045 5.00286 5.02377 5.07051 5.08786 5.10637 5.12938 5.15390 5.24743 5.32187 5.42949 5.49755 5.51778 5.56839 5.59844 5.78152 5.85809 6.11871 6.27932 6.79417 7.41129 8.90263 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.004680 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.061207 B = 5981.676940 C = 6487.162659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.155 4.155 4 C 0.144 3.856 5 H 0.075 0.925 6 C -0.111 4.111 7 C -0.119 4.119 8 C 0.109 3.891 9 N -1.015 6.015 10 S 2.801 3.199 11 O -0.998 6.998 12 O -1.019 7.019 13 N -0.998 5.998 14 C 0.107 3.893 15 C 0.273 3.727 16 H 0.021 0.979 17 C -0.132 4.132 18 C -0.540 4.540 19 H 0.054 0.946 20 C 0.018 3.982 21 N -0.912 5.912 22 Si 0.956 3.044 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.035 0.965 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.654 -16.760 -8.251 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.195 4.195 4 C 0.039 3.961 5 H 0.093 0.907 6 C -0.150 4.150 7 C -0.158 4.158 8 C -0.016 4.016 9 N -0.856 5.856 10 S 2.813 3.187 11 O -0.983 6.983 12 O -1.003 7.003 13 N -0.840 5.840 14 C -0.038 4.038 15 C 0.168 3.832 16 H 0.039 0.961 17 C -0.191 4.191 18 C -0.580 4.580 19 H 0.072 0.928 20 C -0.182 4.182 21 N -0.551 5.551 22 Si 0.781 3.219 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.299 -16.026 -8.155 19.406 hybrid contribution 0.470 1.170 0.966 1.588 sum -6.829 -14.855 -7.189 17.861 Atomic orbital electron populations 1.21794 0.95844 1.02174 1.01394 1.21424 0.95942 0.94483 1.03138 1.22383 0.94961 0.99485 1.02621 1.21635 0.93526 0.80224 1.00715 0.90701 1.22716 0.96677 0.99961 0.95601 1.22806 0.97979 0.91982 1.03043 1.22209 0.92868 0.99651 0.86858 1.59061 1.63441 1.26410 1.36710 1.01036 0.72986 0.72207 0.72511 1.93477 1.48576 1.81383 1.74823 1.93527 1.87455 1.40746 1.78559 1.57700 1.37366 1.49795 1.39118 1.21290 1.03069 0.90952 0.88521 1.18412 0.81913 0.86824 0.96028 0.96143 1.21885 1.00151 0.98597 0.98516 1.21666 1.12322 1.19822 1.04180 0.92820 1.25636 0.95298 0.98081 0.99134 1.69977 1.16257 1.36223 1.32666 0.85545 0.78206 0.78464 0.79653 1.19599 1.19708 1.20889 0.92722 0.91226 0.94055 0.89693 0.91608 0.92101 0.91796 0.87800 0.89284 0.90531 0.87728 0.91171 0.92691 0.94172 0.90540 0.90323 0.91409 0.93886 0.94578 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.11 -1.91 5.71 30.59 0.17 -1.74 16 3 C -0.16 -3.72 4.68 30.60 0.14 -3.58 16 4 C 0.14 3.39 3.07 45.34 0.14 3.53 16 5 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.11 -1.73 5.59 31.78 0.18 -1.56 16 7 C -0.12 -2.16 7.10 32.06 0.23 -1.93 16 8 C 0.11 3.01 7.05 86.93 0.61 3.62 16 9 N -1.02 -31.81 3.46 -483.87 -1.67 -33.48 16 10 S 2.80 116.83 6.23 -56.49 -0.35 116.48 16 11 O -1.00 -42.20 14.37 -128.00 -1.84 -44.04 16 12 O -1.02 -51.63 16.37 -128.00 -2.09 -53.72 16 13 N -1.00 -43.03 3.12 -520.42 -1.62 -44.65 16 14 C 0.11 3.87 9.53 127.77 1.22 5.08 16 15 C 0.27 13.79 2.62 44.25 0.12 13.90 16 16 H 0.02 1.19 6.91 -2.39 -0.02 1.17 16 17 C -0.13 -5.97 8.95 71.98 0.64 -5.33 16 18 C -0.54 -30.07 8.37 25.60 0.21 -29.85 16 19 H 0.05 3.00 7.64 -2.91 -0.02 2.98 16 20 C 0.02 1.02 5.30 84.65 0.45 1.47 16 21 N -0.91 -51.63 11.32 21.45 0.24 -51.39 16 22 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.08 1.07 7.53 -2.38 -0.02 1.05 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.88 5.68 -2.39 -0.01 1.87 16 32 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.18 7.80 -2.39 -0.02 1.17 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 2.27 7.79 -2.39 -0.02 2.25 16 41 H 0.08 2.69 6.43 -2.39 -0.02 2.67 16 42 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 43 H 0.04 1.82 6.66 -2.39 -0.02 1.80 16 44 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -69.81 360.20 0.46 -69.35 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.94 Total: 13.79 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 4.83 Total: -18.28 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -3.05 Total: -129.52 kcal Atomic # 8 Polarization: -93.83 SS G_CDS: -3.93 Total: -97.76 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 116.83 SS G_CDS: -0.35 Total: 116.48 kcal Total: -69.81 0.46 -69.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414364318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.387 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds