Wall clock time and date at job start Tue Mar 31 2020 08:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47146 * 185.12157 * 3 2 1 5 5 H 1.09005 * 109.87316 * 55.88771 * 4 3 2 6 6 C 1.54326 * 109.88704 * 294.70997 * 4 3 2 7 7 C 1.55151 * 102.94068 * 218.38779 * 6 4 3 8 8 C 1.54687 * 101.68014 * 35.33451 * 7 6 4 9 9 N 1.47024 * 109.88302 * 176.89619 * 4 3 2 10 10 S 1.65591 * 125.65221 * 298.32369 * 9 4 3 11 11 O 1.42096 * 106.40712 * 160.42052 * 10 9 4 12 12 O 1.42105 * 106.40116 * 27.49981 * 10 9 4 13 13 N 1.65597 * 107.22369 * 273.96232 * 10 9 4 14 14 C 1.46504 * 120.00042 * 264.65233 * 13 10 9 15 15 C 1.46505 * 120.00019 * 84.64630 * 13 10 9 16 16 H 1.08996 * 109.47215 * 0.02562 * 15 13 10 17 17 C 1.53005 * 109.46763 * 240.00214 * 15 13 10 18 18 C 1.50699 * 109.46928 * 120.00500 * 15 13 10 19 19 H 1.07999 * 120.00205 * 0.02562 * 18 15 13 20 20 C 1.37875 * 119.99819 * 179.97438 * 18 15 13 21 21 N 1.31514 * 119.99991 * 179.97438 * 20 18 15 22 22 Si 1.86802 * 120.00205 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.47114 * 270.00119 * 22 20 18 24 24 H 1.48501 * 109.46629 * 30.00369 * 22 20 18 25 25 H 1.48499 * 109.46857 * 149.99934 * 22 20 18 26 26 H 1.09011 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47161 * 299.99769 * 1 2 3 28 28 H 1.09000 * 109.47384 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47161 * 240.00231 * 2 1 3 30 30 H 1.09009 * 109.47188 * 120.00152 * 2 1 3 31 31 H 1.08998 * 109.47238 * 65.12640 * 3 2 1 32 32 H 1.08997 * 109.47391 * 305.12334 * 3 2 1 33 33 H 1.08998 * 110.71777 * 336.74989 * 6 4 3 34 34 H 1.08992 * 110.71932 * 99.84351 * 6 4 3 35 35 H 1.09001 * 111.00390 * 153.57442 * 7 6 4 36 36 H 1.09004 * 111.00548 * 277.42333 * 7 6 4 37 37 H 1.09008 * 110.39383 * 204.36291 * 8 7 6 38 38 H 1.08999 * 110.23557 * 82.11377 * 8 7 6 39 39 H 1.08995 * 109.46773 * 275.33336 * 14 13 10 40 40 H 1.09001 * 109.47164 * 35.33168 * 14 13 10 41 41 H 1.08998 * 109.47323 * 155.32854 * 14 13 10 42 42 H 1.08998 * 109.47023 * 60.00861 * 17 15 13 43 43 H 1.09005 * 109.46559 * 179.97438 * 17 15 13 44 44 H 1.08996 * 109.47325 * 300.00018 * 17 15 13 45 45 H 0.96998 * 120.00574 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5645 1.4444 -0.1288 5 1 3.8616 0.8955 -1.0224 6 6 4.1978 0.7995 1.1221 7 6 5.4544 1.6760 1.3664 8 6 4.9469 3.0753 0.9454 9 7 4.0581 2.8272 -0.2043 10 16 3.6836 3.9224 -1.3886 11 8 3.9729 5.2066 -0.8536 12 8 2.4023 3.5568 -1.8826 13 7 4.7500 3.6832 -2.6327 14 6 5.9639 4.4983 -2.7239 15 6 4.4797 2.6563 -3.6420 16 1 3.5388 2.1575 -3.4099 17 6 5.6148 1.6304 -3.6425 18 6 4.3843 3.3005 -5.0010 19 1 4.5126 4.3680 -5.1028 20 6 4.1341 2.5270 -6.1146 21 7 4.0504 3.0893 -7.3005 22 14 3.9142 0.6803 -5.9389 23 1 5.2321 0.0097 -6.0755 24 1 3.3394 0.3751 -4.6041 25 1 2.9963 0.1883 -6.9974 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7535 1.9291 0.9323 32 1 1.6036 1.9821 -0.8405 33 1 3.5171 0.8559 1.9715 34 1 4.4784 -0.2346 0.9226 35 1 5.7416 1.6627 2.4179 36 1 6.2823 1.3574 0.7329 37 1 5.7827 3.7092 0.6490 38 1 4.3912 3.5362 1.7620 39 1 5.7351 5.4351 -3.2319 40 1 6.3357 4.7100 -1.7214 41 1 6.7242 3.9563 -3.2863 42 1 5.6837 1.1643 -2.6596 43 1 5.4134 0.8661 -4.3932 44 1 6.5555 2.1294 -3.8749 45 1 3.8748 2.5451 -8.0840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414364327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:36 Heat of formation + Delta-G solvation = -77.813359 kcal Electronic energy + Delta-G solvation = -25564.133202 eV Core-core repulsion = 22129.394901 eV Total energy + Delta-G solvation = -3434.738301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.91319 -36.82454 -36.40599 -35.31859 -34.50333 -32.50015 -30.88336 -30.05857 -29.72217 -25.85064 -25.48774 -24.99730 -22.19473 -21.77336 -20.80375 -20.49818 -18.38101 -17.40200 -17.20917 -16.51026 -15.92433 -15.43532 -15.04613 -14.70084 -14.08325 -13.78754 -13.67840 -13.49085 -13.36007 -13.13012 -12.80287 -12.66317 -12.32034 -12.19908 -12.09823 -11.89407 -11.80564 -11.60706 -11.48076 -11.41692 -11.22812 -11.18996 -11.08815 -10.92251 -10.77489 -10.69165 -10.47239 -10.19381 -10.16193 -9.61645 -9.41488 -8.88383 -8.63384 -8.11294 -6.13217 -4.13594 1.03960 3.20078 3.30878 3.34413 3.37526 3.96706 4.33180 4.40779 4.57207 4.76635 4.93589 4.98900 5.15581 5.16665 5.18859 5.36327 5.40817 5.42973 5.57770 5.62190 5.70530 5.77530 5.81521 5.86568 5.95640 5.96875 6.02254 6.08575 6.15266 6.20769 6.24496 6.26526 6.30077 6.43174 6.46326 6.52416 6.61195 6.63770 6.79771 7.27945 7.39602 7.62576 8.46706 8.91427 9.46499 10.99907 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.006870 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.522873 B = 4074.483323 C = 4965.963809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.151 3.849 5 H 0.074 0.926 6 C -0.122 4.122 7 C -0.131 4.131 8 C 0.125 3.875 9 N -1.019 6.019 10 S 2.791 3.209 11 O -0.988 6.988 12 O -0.965 6.965 13 N -0.985 5.985 14 C 0.110 3.890 15 C 0.242 3.758 16 H 0.053 0.947 17 C -0.163 4.163 18 C -0.521 4.521 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.894 5.894 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.264 1.264 25 H -0.293 1.293 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.032 0.968 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -6.584 18.057 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.194 4.194 4 C 0.045 3.955 5 H 0.092 0.908 6 C -0.160 4.160 7 C -0.170 4.170 8 C -0.001 4.001 9 N -0.857 5.857 10 S 2.802 3.198 11 O -0.972 6.972 12 O -0.949 6.949 13 N -0.826 5.826 14 C -0.036 4.036 15 C 0.137 3.863 16 H 0.071 0.929 17 C -0.221 4.221 18 C -0.560 4.560 19 H 0.100 0.900 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.712 3.288 23 H -0.204 1.204 24 H -0.189 1.189 25 H -0.221 1.221 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.321 -5.862 17.821 18.807 hybrid contribution 0.294 -1.263 -0.209 1.314 sum 1.616 -7.126 17.612 19.067 Atomic orbital electron populations 1.21764 0.95867 1.01238 1.02092 1.21446 0.96002 0.96446 1.01788 1.22431 0.94745 0.97889 1.04372 1.21351 0.93701 0.81627 0.98826 0.90757 1.22688 0.96843 0.99168 0.97343 1.22748 0.97905 0.94777 1.01574 1.21826 0.92738 0.97249 0.88268 1.59426 1.61260 1.25873 1.39146 1.01648 0.73846 0.72431 0.71842 1.93540 1.85923 1.38052 1.79694 1.93555 1.38136 1.83733 1.79490 1.57554 1.37142 1.48209 1.39692 1.21178 0.87216 0.95114 1.00092 1.19040 0.93869 0.84855 0.88496 0.92937 1.22506 1.01574 0.99340 0.98718 1.21158 1.49574 0.96585 0.88703 0.90031 1.24907 0.94484 0.98382 0.95131 1.69871 1.48869 1.35951 0.98478 0.86956 0.77639 0.86245 0.78003 1.20436 1.18948 1.22072 0.93013 0.92992 0.92272 0.91832 0.92258 0.91853 0.88137 0.90671 0.90467 0.90351 0.90657 0.90992 0.91788 0.92979 0.93313 0.90606 0.94899 0.93290 0.92161 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.37 5.68 -26.74 -0.15 -1.52 16 3 C -0.16 -2.14 4.63 -26.73 -0.12 -2.26 16 4 C 0.15 2.03 3.16 -66.95 -0.21 1.81 16 5 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.17 5.61 -24.90 -0.14 -1.31 16 7 C -0.13 -1.19 7.07 -24.71 -0.17 -1.36 16 8 C 0.12 1.46 6.94 -2.65 -0.02 1.44 16 9 N -1.02 -15.26 3.46 -104.54 -0.36 -15.62 16 10 S 2.79 54.39 6.27 -107.50 -0.67 53.71 16 11 O -0.99 -20.52 16.69 -57.17 -0.95 -21.47 16 12 O -0.97 -21.58 13.96 -57.17 -0.80 -22.38 16 13 N -0.98 -20.03 3.12 -115.85 -0.36 -20.39 16 14 C 0.11 1.96 9.44 59.85 0.57 2.52 16 15 C 0.24 5.58 2.19 -69.08 -0.15 5.43 16 16 H 0.05 1.28 6.12 -51.93 -0.32 0.96 16 17 C -0.16 -3.28 8.66 37.16 0.32 -2.95 16 18 C -0.52 -14.39 8.95 -34.44 -0.31 -14.70 16 19 H 0.08 2.46 7.89 -52.49 -0.41 2.04 16 20 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 21 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 22 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 23 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 24 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.56 7.57 -51.92 -0.39 0.17 16 31 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.10 1.72 5.57 -51.93 -0.29 1.43 16 33 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 41 H 0.08 1.29 6.44 -51.93 -0.33 0.95 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 44 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -32.72 353.27 -9.07 -41.78 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.75 Total: 0.30 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.12 Total: -12.22 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.05 Total: -62.21 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.75 Total: -43.85 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: 54.39 SS G_CDS: -0.67 Total: 53.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.72 -9.07 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414364327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.031 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds