Wall clock time and date at job start Tue Mar 31 2020 08:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.46974 * 2 1 4 4 C 1.53001 * 109.47146 * 185.12157 * 3 2 1 5 5 H 1.09005 * 109.87316 * 55.88771 * 4 3 2 6 6 C 1.54326 * 109.88704 * 294.70997 * 4 3 2 7 7 C 1.55151 * 102.94068 * 218.38779 * 6 4 3 8 8 C 1.54687 * 101.68014 * 35.33451 * 7 6 4 9 9 N 1.47024 * 109.88302 * 176.89619 * 4 3 2 10 10 S 1.65591 * 125.65221 * 298.32369 * 9 4 3 11 11 O 1.42096 * 106.40712 * 160.42052 * 10 9 4 12 12 O 1.42105 * 106.40116 * 27.49981 * 10 9 4 13 13 N 1.65597 * 107.22369 * 273.96232 * 10 9 4 14 14 C 1.46504 * 120.00042 * 264.65233 * 13 10 9 15 15 C 1.46505 * 120.00019 * 84.64630 * 13 10 9 16 16 H 1.08996 * 109.47215 * 0.02562 * 15 13 10 17 17 C 1.53005 * 109.46763 * 240.00214 * 15 13 10 18 18 C 1.50699 * 109.46928 * 120.00500 * 15 13 10 19 19 H 1.07999 * 120.00205 * 0.02562 * 18 15 13 20 20 C 1.37875 * 119.99819 * 179.97438 * 18 15 13 21 21 N 1.31514 * 119.99991 * 179.97438 * 20 18 15 22 22 Si 1.86802 * 120.00205 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.47114 * 270.00119 * 22 20 18 24 24 H 1.48501 * 109.46629 * 30.00369 * 22 20 18 25 25 H 1.48499 * 109.46857 * 149.99934 * 22 20 18 26 26 H 1.09011 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47161 * 299.99769 * 1 2 3 28 28 H 1.09000 * 109.47384 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47161 * 240.00231 * 2 1 3 30 30 H 1.09009 * 109.47188 * 120.00152 * 2 1 3 31 31 H 1.08998 * 109.47238 * 65.12640 * 3 2 1 32 32 H 1.08997 * 109.47391 * 305.12334 * 3 2 1 33 33 H 1.08998 * 110.71777 * 336.74989 * 6 4 3 34 34 H 1.08992 * 110.71932 * 99.84351 * 6 4 3 35 35 H 1.09001 * 111.00390 * 153.57442 * 7 6 4 36 36 H 1.09004 * 111.00548 * 277.42333 * 7 6 4 37 37 H 1.09008 * 110.39383 * 204.36291 * 8 7 6 38 38 H 1.08999 * 110.23557 * 82.11377 * 8 7 6 39 39 H 1.08995 * 109.46773 * 275.33336 * 14 13 10 40 40 H 1.09001 * 109.47164 * 35.33168 * 14 13 10 41 41 H 1.08998 * 109.47323 * 155.32854 * 14 13 10 42 42 H 1.08998 * 109.47023 * 60.00861 * 17 15 13 43 43 H 1.09005 * 109.46559 * 179.97438 * 17 15 13 44 44 H 1.08996 * 109.47325 * 300.00018 * 17 15 13 45 45 H 0.96998 * 120.00574 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5645 1.4444 -0.1288 5 1 3.8616 0.8955 -1.0224 6 6 4.1978 0.7995 1.1221 7 6 5.4544 1.6760 1.3664 8 6 4.9469 3.0753 0.9454 9 7 4.0581 2.8272 -0.2043 10 16 3.6836 3.9224 -1.3886 11 8 3.9729 5.2066 -0.8536 12 8 2.4023 3.5568 -1.8826 13 7 4.7500 3.6832 -2.6327 14 6 5.9639 4.4983 -2.7239 15 6 4.4797 2.6563 -3.6420 16 1 3.5388 2.1575 -3.4099 17 6 5.6148 1.6304 -3.6425 18 6 4.3843 3.3005 -5.0010 19 1 4.5126 4.3680 -5.1028 20 6 4.1341 2.5270 -6.1146 21 7 4.0504 3.0893 -7.3005 22 14 3.9142 0.6803 -5.9389 23 1 5.2321 0.0097 -6.0755 24 1 3.3394 0.3751 -4.6041 25 1 2.9963 0.1883 -6.9974 26 1 -0.3634 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7535 1.9291 0.9323 32 1 1.6036 1.9821 -0.8405 33 1 3.5171 0.8559 1.9715 34 1 4.4784 -0.2346 0.9226 35 1 5.7416 1.6627 2.4179 36 1 6.2823 1.3574 0.7329 37 1 5.7827 3.7092 0.6490 38 1 4.3912 3.5362 1.7620 39 1 5.7351 5.4351 -3.2319 40 1 6.3357 4.7100 -1.7214 41 1 6.7242 3.9563 -3.2863 42 1 5.6837 1.1643 -2.6596 43 1 5.4134 0.8661 -4.3932 44 1 6.5555 2.1294 -3.8749 45 1 3.8748 2.5451 -8.0840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414364327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:35 Heat of formation + Delta-G solvation = -101.319609 kcal Electronic energy + Delta-G solvation = -25565.152510 eV Core-core repulsion = 22129.394901 eV Total energy + Delta-G solvation = -3435.757609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.87506 -38.44983 -38.10339 -36.94789 -35.45093 -34.55850 -31.86912 -31.78457 -30.64712 -27.39005 -27.01631 -26.38674 -23.28326 -22.62844 -22.50518 -21.45550 -19.80169 -19.02615 -18.74021 -18.26090 -17.32034 -16.92771 -16.34240 -15.95590 -15.42836 -15.19672 -14.96280 -14.81080 -14.47358 -14.45736 -14.26524 -13.98217 -13.86917 -13.63806 -13.47169 -13.19565 -13.17850 -13.00059 -12.92222 -12.82918 -12.73997 -12.49210 -12.19320 -12.03345 -11.98983 -11.75376 -11.73368 -11.49566 -11.44083 -11.35108 -11.19846 -10.78385 -10.01458 -9.76723 -8.31823 -6.37288 -0.46330 1.27678 1.36875 1.45260 1.96800 2.29936 2.50616 3.02527 3.18878 3.63611 3.84553 3.89712 3.94880 4.20452 4.24719 4.28886 4.40069 4.45200 4.57582 4.59549 4.63568 4.67630 4.71774 4.74694 4.82863 4.94977 4.97161 5.00549 5.04754 5.08058 5.09114 5.12518 5.17340 5.26399 5.31303 5.42083 5.43670 5.50283 5.54826 5.58971 5.60564 5.87029 6.31976 6.66769 7.27239 8.85172 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.006870 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.522873 B = 4074.483323 C = 4965.963809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.158 4.158 4 C 0.141 3.859 5 H 0.064 0.936 6 C -0.112 4.112 7 C -0.120 4.120 8 C 0.110 3.890 9 N -1.013 6.013 10 S 2.801 3.199 11 O -1.007 7.007 12 O -1.003 7.003 13 N -0.994 5.994 14 C 0.105 3.895 15 C 0.247 3.753 16 H 0.040 0.960 17 C -0.156 4.156 18 C -0.528 4.528 19 H 0.037 0.963 20 C 0.014 3.986 21 N -0.945 5.945 22 Si 0.942 3.058 23 H -0.251 1.251 24 H -0.246 1.246 25 H -0.299 1.299 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 -9.613 21.366 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.197 4.197 4 C 0.035 3.965 5 H 0.082 0.918 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.014 4.014 9 N -0.855 5.855 10 S 2.813 3.187 11 O -0.991 6.991 12 O -0.987 6.987 13 N -0.834 5.834 14 C -0.040 4.040 15 C 0.141 3.859 16 H 0.058 0.942 17 C -0.214 4.214 18 C -0.567 4.567 19 H 0.055 0.945 20 C -0.184 4.184 21 N -0.585 5.585 22 Si 0.767 3.233 23 H -0.176 1.176 24 H -0.170 1.170 25 H -0.227 1.227 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.775 -8.867 21.149 23.100 hybrid contribution -0.190 -0.174 -1.173 1.201 sum 2.585 -9.041 19.976 22.078 Atomic orbital electron populations 1.21788 0.95884 1.02121 1.01375 1.21448 0.96025 0.94954 1.02865 1.22411 0.95266 0.99078 1.02928 1.21628 0.93554 0.80602 1.00706 0.91751 1.22708 0.96991 0.99883 0.95515 1.22757 0.97504 0.92168 1.03420 1.22217 0.92474 0.99615 0.87118 1.59033 1.61876 1.26041 1.38522 1.01053 0.73060 0.72488 0.72111 1.93502 1.86016 1.39663 1.79946 1.93517 1.40359 1.84265 1.80582 1.57537 1.37884 1.48158 1.39853 1.21328 0.86594 0.94035 1.02070 1.18795 0.94822 0.85843 0.86454 0.94238 1.22361 1.00150 0.98174 1.00746 1.21455 1.48845 0.94887 0.91530 0.94508 1.25815 0.94164 1.03841 0.94554 1.70035 1.50813 1.38093 0.99552 0.85979 0.78777 0.79941 0.78565 1.17607 1.16998 1.22651 0.91298 0.92172 0.94609 0.92551 0.89218 0.91071 0.92309 0.89197 0.88354 0.87356 0.90235 0.90674 0.90902 0.95045 0.89936 0.89770 0.91057 0.93965 0.91460 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.47 16 2 C -0.11 -2.38 5.68 30.59 0.17 -2.20 16 3 C -0.16 -4.14 4.63 30.59 0.14 -4.00 16 4 C 0.14 3.41 3.16 45.34 0.14 3.55 16 5 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 6 C -0.11 -1.61 5.61 31.78 0.18 -1.44 16 7 C -0.12 -1.56 7.07 31.91 0.23 -1.34 16 8 C 0.11 2.22 6.94 86.78 0.60 2.82 16 9 N -1.01 -28.50 3.46 -484.65 -1.68 -30.18 16 10 S 2.80 109.85 6.27 -56.49 -0.35 109.50 16 11 O -1.01 -42.08 16.69 -128.00 -2.14 -44.21 16 12 O -1.00 -46.60 13.96 -128.00 -1.79 -48.39 16 13 N -0.99 -40.55 3.12 -520.43 -1.62 -42.17 16 14 C 0.11 3.73 9.44 127.77 1.21 4.93 16 15 C 0.25 11.36 2.19 44.25 0.10 11.46 16 16 H 0.04 1.93 6.12 -2.39 -0.01 1.92 16 17 C -0.16 -5.89 8.66 71.98 0.62 -5.26 16 18 C -0.53 -30.23 8.95 25.60 0.23 -30.00 16 19 H 0.04 2.36 7.89 -2.91 -0.02 2.34 16 20 C 0.01 0.83 5.45 84.65 0.46 1.29 16 21 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 22 Si 0.94 43.70 24.37 68.60 1.67 45.38 16 23 H -0.25 -10.54 6.87 99.48 0.68 -9.86 16 24 H -0.25 -10.59 6.53 99.48 0.65 -9.94 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.32 7.57 -2.38 -0.02 1.30 16 31 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.06 2.06 5.57 -2.39 -0.01 2.05 16 33 H 0.09 1.07 7.79 -2.39 -0.02 1.06 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 2.32 7.85 -2.39 -0.02 2.31 16 41 H 0.08 2.80 6.44 -2.39 -0.02 2.78 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.66 3.27 -2.38 -0.01 1.65 16 44 H 0.07 2.43 6.67 -2.39 -0.02 2.41 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -75.53 353.27 0.06 -75.47 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.87 Total: 16.22 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 4.80 Total: -22.66 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -3.00 Total: -131.30 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -3.92 Total: -92.60 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.38 kcal Atomic # 16 Polarization: 109.85 SS G_CDS: -0.35 Total: 109.50 kcal Total: -75.53 0.06 -75.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414364327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.854 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds