Wall clock time and date at job start Tue Mar 31 2020 09:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47038 * 2 1 4 4 H 1.08999 * 115.55962 * 29.30964 * 3 2 1 5 5 C 1.53000 * 117.49665 * 243.62226 * 3 2 1 6 6 C 1.52995 * 117.49592 * 174.99925 * 3 2 1 7 7 H 1.09004 * 117.52373 * 0.02562 * 6 3 2 8 8 C 1.53003 * 117.49736 * 214.97329 * 6 3 2 9 9 N 1.46503 * 109.46989 * 174.98929 * 8 6 3 10 10 C 1.34782 * 119.99826 * 180.02562 * 9 8 6 11 11 O 1.21584 * 119.99829 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00025 * 180.02562 * 10 9 8 13 13 C 1.40024 * 120.00223 * 175.49415 * 12 10 9 14 14 C 1.38917 * 120.00106 * 35.12482 * 13 12 10 15 15 C 1.38005 * 119.99784 * 179.97438 * 14 13 12 16 16 C 1.38901 * 120.00216 * 0.02562 * 15 14 13 17 17 O 1.35787 * 120.00067 * 179.97438 * 16 15 14 18 18 C 1.34820 * 116.99572 * 354.65148 * 17 16 15 19 19 H 1.07999 * 119.99846 * 5.03599 * 18 17 16 20 20 C 1.38630 * 119.99585 * 185.03714 * 18 17 16 21 21 N 1.31574 * 120.00315 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99613 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47001 * 119.99999 * 22 20 18 25 25 H 1.48503 * 109.46658 * 239.99942 * 22 20 18 26 26 C 1.38898 * 120.00215 * 0.25102 * 16 15 14 27 27 C 1.38010 * 120.00335 * 359.49398 * 26 16 15 28 28 H 1.09003 * 109.46858 * 299.99996 * 1 2 3 29 29 H 1.08993 * 109.46806 * 59.99834 * 1 2 3 30 30 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47187 * 240.00283 * 2 1 3 32 32 H 1.09007 * 109.47302 * 119.99849 * 2 1 3 33 33 H 1.08995 * 117.49979 * 145.01990 * 5 3 2 34 34 H 1.09000 * 117.51898 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.46556 * 54.99317 * 8 6 3 36 36 H 1.08998 * 109.47292 * 294.98965 * 8 6 3 37 37 H 0.96996 * 119.99844 * 0.02562 * 9 8 6 38 38 H 0.97006 * 119.99805 * 355.48940 * 12 10 9 39 39 H 1.07998 * 119.99724 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.99918 * 180.02562 * 15 14 13 41 41 H 0.96992 * 120.00134 * 180.02562 * 21 20 18 42 42 H 1.08007 * 120.00356 * 179.74820 * 26 16 15 43 43 H 1.07999 * 120.00419 * 180.27499 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8440 1.9076 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1807 0.7721 0.1957 8 6 4.0300 2.8805 0.9031 9 7 5.4910 2.8511 1.0074 10 6 6.1398 3.8349 1.6616 11 8 5.5126 4.7469 2.1646 12 7 7.4839 3.8082 1.7571 13 6 8.1648 4.8766 2.3536 14 6 7.5957 5.5505 3.4268 15 6 8.2671 6.6030 4.0149 16 6 9.5115 6.9889 3.5335 17 8 10.1719 8.0249 4.1119 18 6 9.5184 8.7061 5.0745 19 1 8.5485 8.3700 5.4103 20 6 10.0915 9.8380 5.6333 21 7 11.2733 10.2472 5.2246 22 14 9.1864 10.7814 6.9676 23 1 7.8864 10.1201 7.2464 24 1 10.0080 10.8005 8.2043 25 1 8.9451 12.1741 6.5120 26 6 10.0780 6.3188 2.4568 27 6 9.4091 5.2628 1.8718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.7213 2.9427 -1.5344 34 1 3.0101 1.1860 -2.0157 35 1 3.5941 2.8650 1.9020 36 1 3.7209 3.7887 0.3858 37 1 5.9914 2.1237 0.6058 38 1 7.9796 3.0489 1.4127 39 1 6.6280 5.2506 3.8008 40 1 7.8249 7.1267 4.8496 41 1 11.6744 11.0389 5.6158 42 1 11.0439 6.6215 2.0798 43 1 9.8516 4.7390 1.0375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414387080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:37 Heat of formation + Delta-G solvation = -11.264676 kcal Electronic energy + Delta-G solvation = -23202.129917 eV Core-core repulsion = 19634.833431 eV Total energy + Delta-G solvation = -3567.296485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.30830 -38.93298 -38.42986 -36.57913 -34.55022 -33.88008 -32.37916 -32.06725 -30.13424 -28.31816 -26.56573 -25.14760 -24.20266 -22.38329 -21.68695 -21.30808 -20.92020 -20.23939 -18.42486 -17.83440 -17.34748 -16.51024 -15.88248 -15.37113 -15.16085 -14.66809 -14.60514 -14.45744 -14.27808 -13.77517 -13.64471 -13.56042 -13.43699 -12.80662 -12.69605 -12.51585 -12.48741 -11.84073 -11.71139 -11.68606 -11.49975 -11.46340 -11.41239 -11.01026 -10.70891 -10.41382 -10.38454 -10.32028 -9.89659 -9.57616 -9.15810 -9.09404 -8.64588 -8.14050 -6.86024 -6.39508 -3.96947 2.20084 2.30734 2.69961 3.16025 3.19005 3.24646 3.33387 3.39128 4.02311 4.10237 4.29680 4.40336 4.54087 4.64095 4.74883 4.84813 4.91882 5.01347 5.14499 5.29997 5.31990 5.37237 5.46838 5.53445 5.57320 5.66242 5.71172 5.73129 5.78481 5.83472 5.95123 6.18948 6.24345 6.33098 6.44071 6.73332 6.79886 7.02111 7.16904 7.25505 7.40077 7.50493 7.85256 8.05748 8.10022 8.72488 9.06691 9.76716 10.78681 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.002154 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.132742 B =12997.923325 C =13793.408311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.140 4.140 4 H 0.108 0.892 5 C -0.172 4.172 6 C -0.166 4.166 7 H 0.109 0.891 8 C 0.171 3.829 9 N -0.747 5.747 10 C 0.698 3.302 11 O -0.576 6.576 12 N -0.675 5.675 13 C 0.053 3.947 14 C -0.064 4.064 15 C -0.219 4.219 16 C 0.145 3.855 17 O -0.179 6.179 18 C -0.389 4.389 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.178 4.178 27 C -0.096 4.096 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.268 0.732 42 H 0.121 0.879 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.232 -20.465 -11.349 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.159 4.159 4 H 0.126 0.874 5 C -0.209 4.209 6 C -0.184 4.184 7 H 0.127 0.873 8 C 0.047 3.953 9 N -0.403 5.403 10 C 0.399 3.601 11 O -0.452 6.452 12 N -0.322 5.322 13 C -0.040 4.040 14 C -0.085 4.085 15 C -0.239 4.239 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.465 4.465 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.198 4.198 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.228 0.772 38 H 0.231 0.769 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.078 0.922 42 H 0.139 0.861 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.469 -19.327 -10.875 27.039 hybrid contribution 0.020 -0.269 0.216 0.346 sum -15.449 -19.596 -10.659 27.135 Atomic orbital electron populations 1.21749 0.95330 1.01636 1.02068 1.21135 0.96131 0.93915 1.02011 1.22496 0.92653 0.98424 1.02334 0.87378 1.23271 1.03631 1.02695 0.91287 1.22566 0.95754 0.99751 1.00346 0.87263 1.20685 0.78716 0.96087 0.99860 1.45061 1.07417 1.27364 1.60495 1.15957 0.81934 0.82514 0.79711 1.90936 1.66240 1.36154 1.51897 1.42284 1.04731 1.22086 1.63145 1.17046 0.94474 0.94578 0.97866 1.20888 0.99219 0.95252 0.93107 1.21115 0.96865 1.01327 1.04613 1.19403 0.90683 0.89189 0.91637 1.83977 1.39653 1.37190 1.47427 1.21386 1.03362 1.07766 1.14005 0.88987 1.25274 0.96294 0.96240 0.98774 1.70054 1.14886 1.23863 1.41155 0.85653 0.79090 0.79277 0.79474 1.19055 1.20206 1.20187 1.19973 1.02010 0.99218 0.98550 1.20336 0.94625 0.97305 0.99343 0.92535 0.92575 0.92704 0.91861 0.91533 0.88475 0.88672 0.91244 0.91436 0.77214 0.76894 0.85575 0.85243 0.92163 0.86092 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.87 37.16 0.37 -0.38 16 2 C -0.09 -0.50 6.22 -26.73 -0.17 -0.67 16 3 C -0.14 -0.88 5.46 -90.62 -0.49 -1.37 16 4 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 5 C -0.17 -1.07 9.82 -26.73 -0.26 -1.33 16 6 C -0.17 -1.11 5.57 -90.62 -0.50 -1.61 16 7 H 0.11 0.63 8.04 -51.93 -0.42 0.21 16 8 C 0.17 1.64 5.96 -4.04 -0.02 1.61 16 9 N -0.75 -7.68 5.56 -65.22 -0.36 -8.04 16 10 C 0.70 10.51 8.41 -86.92 -0.73 9.78 16 11 O -0.58 -11.32 13.78 5.29 0.07 -11.24 16 12 N -0.68 -9.54 5.34 -14.18 -0.08 -9.61 16 13 C 0.05 0.98 6.30 -83.61 -0.53 0.45 16 14 C -0.06 -1.35 8.69 -39.42 -0.34 -1.69 16 15 C -0.22 -5.10 9.16 -39.42 -0.36 -5.46 16 16 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 17 O -0.18 -5.20 9.76 -0.04 0.00 -5.20 16 18 C -0.39 -11.14 9.48 30.88 0.29 -10.84 16 19 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 22 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 26 C -0.18 -3.77 9.98 -39.42 -0.39 -4.16 16 27 C -0.10 -1.71 9.96 -39.41 -0.39 -2.10 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 37 H 0.39 2.76 8.42 -40.82 -0.34 2.41 16 38 H 0.40 3.97 8.84 -40.82 -0.36 3.61 16 39 H 0.13 2.66 6.22 -52.49 -0.33 2.33 16 40 H 0.13 3.03 5.63 -52.49 -0.30 2.74 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -34.16 363.37 -9.23 -43.39 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.18 Total: 7.60 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -3.90 Total: -13.49 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.32 Total: -42.60 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.07 Total: -16.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.16 -9.23 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414387080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.125 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds