Wall clock time and date at job start Tue Mar 31 2020 09:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47038 * 2 1 4 4 H 1.08999 * 115.55962 * 29.30964 * 3 2 1 5 5 C 1.53000 * 117.49665 * 243.62226 * 3 2 1 6 6 C 1.52995 * 117.49592 * 174.99925 * 3 2 1 7 7 H 1.09004 * 117.52373 * 0.02562 * 6 3 2 8 8 C 1.53003 * 117.49736 * 214.97329 * 6 3 2 9 9 N 1.46503 * 109.46989 * 174.98929 * 8 6 3 10 10 C 1.34782 * 119.99826 * 180.02562 * 9 8 6 11 11 O 1.21584 * 119.99829 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00025 * 180.02562 * 10 9 8 13 13 C 1.40024 * 120.00223 * 175.49415 * 12 10 9 14 14 C 1.38917 * 120.00106 * 35.12482 * 13 12 10 15 15 C 1.38005 * 119.99784 * 179.97438 * 14 13 12 16 16 C 1.38901 * 120.00216 * 0.02562 * 15 14 13 17 17 O 1.35787 * 120.00067 * 179.97438 * 16 15 14 18 18 C 1.34820 * 116.99572 * 354.65148 * 17 16 15 19 19 H 1.07999 * 119.99846 * 5.03599 * 18 17 16 20 20 C 1.38630 * 119.99585 * 185.03714 * 18 17 16 21 21 N 1.31574 * 120.00315 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99613 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47108 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47001 * 119.99999 * 22 20 18 25 25 H 1.48503 * 109.46658 * 239.99942 * 22 20 18 26 26 C 1.38898 * 120.00215 * 0.25102 * 16 15 14 27 27 C 1.38010 * 120.00335 * 359.49398 * 26 16 15 28 28 H 1.09003 * 109.46858 * 299.99996 * 1 2 3 29 29 H 1.08993 * 109.46806 * 59.99834 * 1 2 3 30 30 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47187 * 240.00283 * 2 1 3 32 32 H 1.09007 * 109.47302 * 119.99849 * 2 1 3 33 33 H 1.08995 * 117.49979 * 145.01990 * 5 3 2 34 34 H 1.09000 * 117.51898 * 359.97438 * 5 3 2 35 35 H 1.09001 * 109.46556 * 54.99317 * 8 6 3 36 36 H 1.08998 * 109.47292 * 294.98965 * 8 6 3 37 37 H 0.96996 * 119.99844 * 0.02562 * 9 8 6 38 38 H 0.97006 * 119.99805 * 355.48940 * 12 10 9 39 39 H 1.07998 * 119.99724 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.99918 * 180.02562 * 15 14 13 41 41 H 0.96992 * 120.00134 * 180.02562 * 21 20 18 42 42 H 1.08007 * 120.00356 * 179.74820 * 26 16 15 43 43 H 1.07999 * 120.00419 * 180.27499 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8440 1.9076 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1807 0.7721 0.1957 8 6 4.0300 2.8805 0.9031 9 7 5.4910 2.8511 1.0074 10 6 6.1398 3.8349 1.6616 11 8 5.5126 4.7469 2.1646 12 7 7.4839 3.8082 1.7571 13 6 8.1648 4.8766 2.3536 14 6 7.5957 5.5505 3.4268 15 6 8.2671 6.6030 4.0149 16 6 9.5115 6.9889 3.5335 17 8 10.1719 8.0249 4.1119 18 6 9.5184 8.7061 5.0745 19 1 8.5485 8.3700 5.4103 20 6 10.0915 9.8380 5.6333 21 7 11.2733 10.2472 5.2246 22 14 9.1864 10.7814 6.9676 23 1 7.8864 10.1201 7.2464 24 1 10.0080 10.8005 8.2043 25 1 8.9451 12.1741 6.5120 26 6 10.0780 6.3188 2.4568 27 6 9.4091 5.2628 1.8718 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.7213 2.9427 -1.5344 34 1 3.0101 1.1860 -2.0157 35 1 3.5941 2.8650 1.9020 36 1 3.7209 3.7887 0.3858 37 1 5.9914 2.1237 0.6058 38 1 7.9796 3.0489 1.4127 39 1 6.6280 5.2506 3.8008 40 1 7.8249 7.1267 4.8496 41 1 11.6744 11.0389 5.6158 42 1 11.0439 6.6215 2.0798 43 1 9.8516 4.7390 1.0375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414387080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:36 Heat of formation + Delta-G solvation = -33.773580 kcal Electronic energy + Delta-G solvation = -23203.105976 eV Core-core repulsion = 19634.833431 eV Total energy + Delta-G solvation = -3568.272544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62526 -40.48451 -39.25716 -38.20335 -35.59046 -35.34311 -34.14083 -32.85378 -31.83179 -29.76612 -27.76291 -27.02634 -24.64181 -23.97642 -23.20578 -22.07453 -21.78212 -21.18743 -20.03527 -19.37907 -18.86769 -18.14286 -16.88556 -16.53256 -16.23545 -16.13421 -15.83601 -15.51886 -15.46385 -15.23345 -15.07634 -14.68103 -14.59974 -14.44011 -14.10381 -13.58495 -13.29938 -13.21412 -13.11327 -12.93018 -12.72102 -12.45191 -12.39516 -12.13113 -12.11489 -11.86430 -11.49641 -11.29872 -10.97913 -10.94406 -10.72943 -10.56215 -10.04841 -9.81717 -8.56451 -8.46097 -6.12681 0.54427 0.60853 1.34974 1.42209 1.52936 1.59932 2.09694 2.18492 2.79027 2.84158 3.16883 3.25098 3.54056 3.62062 3.89076 4.00752 4.11762 4.14986 4.24008 4.31601 4.46383 4.50310 4.54445 4.67717 4.71573 4.74215 4.79884 4.88112 5.00533 5.08180 5.14658 5.17199 5.20554 5.25358 5.31533 5.36950 5.43881 5.47958 5.52222 5.63960 5.72491 6.01294 6.04819 6.21255 6.98696 7.06654 7.54499 7.78520 8.76726 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.002154 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.132742 B =12997.923325 C =13793.408311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.142 4.142 4 H 0.100 0.900 5 C -0.168 4.168 6 C -0.161 4.161 7 H 0.128 0.872 8 C 0.171 3.829 9 N -0.722 5.722 10 C 0.694 3.306 11 O -0.624 6.624 12 N -0.661 5.661 13 C 0.081 3.919 14 C -0.077 4.077 15 C -0.228 4.228 16 C 0.104 3.896 17 O -0.228 6.228 18 C -0.412 4.412 19 H 0.096 0.904 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.016 2.984 23 H -0.257 1.257 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.178 4.178 27 C -0.078 4.078 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.273 0.727 42 H 0.130 0.870 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 -23.339 -13.040 31.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C -0.161 4.161 4 H 0.118 0.882 5 C -0.205 4.205 6 C -0.180 4.180 7 H 0.146 0.854 8 C 0.046 3.954 9 N -0.379 5.379 10 C 0.395 3.605 11 O -0.504 6.504 12 N -0.311 5.311 13 C -0.013 4.013 14 C -0.098 4.098 15 C -0.248 4.248 16 C 0.054 3.946 17 O -0.135 6.135 18 C -0.489 4.489 19 H 0.113 0.887 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.836 3.164 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.198 4.198 27 C -0.098 4.098 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.253 0.747 38 H 0.262 0.738 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.583 -22.327 -12.635 30.548 hybrid contribution 0.202 0.310 0.511 0.631 sum -16.381 -22.017 -12.125 30.002 Atomic orbital electron populations 1.21756 0.95282 1.02013 1.01829 1.21134 0.96173 0.93164 1.02471 1.22546 0.92223 0.98978 1.02303 0.88175 1.23319 1.03008 1.02762 0.91402 1.22464 0.96276 0.98891 1.00341 0.85442 1.20709 0.77985 0.97098 0.99569 1.44858 1.07759 1.26457 1.58800 1.16172 0.81932 0.82767 0.79643 1.90924 1.67237 1.38365 1.53902 1.42057 1.04652 1.21831 1.62534 1.17155 0.94246 0.94046 0.95876 1.20941 0.99219 0.95326 0.94302 1.21088 0.96818 1.02216 1.04695 1.19931 0.91792 0.89470 0.93419 1.83937 1.41237 1.39307 1.48986 1.21797 1.03850 1.08571 1.14652 0.88656 1.26513 0.97194 0.96898 1.01255 1.70178 1.16919 1.25017 1.43484 0.84565 0.78010 0.77639 0.76219 1.18060 1.18987 1.19252 1.20322 1.02515 0.99552 0.97391 1.20759 0.93723 0.95737 0.99577 0.92990 0.92648 0.92032 0.91008 0.91409 0.89153 0.87243 0.92523 0.92892 0.74734 0.73806 0.85818 0.86742 0.91814 0.85217 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.87 71.98 0.71 -0.55 16 2 C -0.09 -0.77 6.22 30.60 0.19 -0.58 16 3 C -0.14 -1.49 5.46 -10.79 -0.06 -1.55 16 4 H 0.10 1.21 8.07 -2.39 -0.02 1.20 16 5 C -0.17 -1.66 9.82 30.60 0.30 -1.36 16 6 C -0.16 -1.72 5.57 -10.79 -0.06 -1.78 16 7 H 0.13 0.94 8.04 -2.38 -0.02 0.92 16 8 C 0.17 2.97 5.96 86.38 0.51 3.48 16 9 N -0.72 -12.64 5.56 -478.52 -2.66 -15.30 16 10 C 0.69 19.17 8.41 179.05 1.51 20.67 16 11 O -0.62 -24.01 13.78 -3.98 -0.05 -24.06 16 12 N -0.66 -16.20 5.34 -317.04 -1.69 -17.89 16 13 C 0.08 2.77 6.30 38.16 0.24 3.01 16 14 C -0.08 -3.23 8.69 22.38 0.19 -3.04 16 15 C -0.23 -11.00 9.16 22.37 0.20 -10.80 16 16 C 0.10 5.37 6.65 22.59 0.15 5.52 16 17 O -0.23 -14.01 9.76 -23.05 -0.22 -14.23 16 18 C -0.41 -24.90 9.48 67.91 0.64 -24.26 16 19 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -57.05 13.67 21.61 0.30 -56.76 16 22 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.18 -7.43 9.98 22.37 0.22 -7.20 16 27 C -0.08 -2.51 9.96 22.38 0.22 -2.29 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.49 7.88 -2.39 -0.02 0.47 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.09 1.04 8.03 -2.39 -0.02 1.02 16 34 H 0.11 0.80 8.03 -2.39 -0.02 0.78 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.10 7.87 -2.39 -0.02 1.08 16 37 H 0.42 3.97 8.42 -92.71 -0.78 3.19 16 38 H 0.42 6.22 8.84 -92.70 -0.82 5.40 16 39 H 0.12 5.25 6.22 -2.91 -0.02 5.23 16 40 H 0.11 5.72 5.63 -2.91 -0.02 5.70 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 42 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 43 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -79.67 363.37 2.58 -77.09 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.56 Total: 26.07 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 5.45 Total: -21.49 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.06 Total: -89.95 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.28 Total: -38.29 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.67 2.58 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414387080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.319 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds