Wall clock time and date at job start Tue Mar 31 2020 09:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00207 * 2 1 4 4 O 1.21275 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99650 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.46751 * 179.97438 * 5 3 2 7 7 C 1.37643 * 120.12660 * 265.30459 * 6 5 3 8 8 C 1.38615 * 120.24522 * 180.32386 * 7 6 5 9 9 C 1.38661 * 120.50152 * 359.67484 * 8 7 6 10 10 C 1.37597 * 120.25027 * 359.97438 * 9 8 7 11 11 C 1.40697 * 120.12902 * 85.00430 * 6 5 3 12 12 C 1.41399 * 120.24121 * 359.97438 * 11 6 5 13 13 H 1.08001 * 119.99962 * 334.14221 * 12 11 6 14 14 C 1.39939 * 119.99941 * 154.14797 * 12 11 6 15 15 N 1.30824 * 120.00166 * 334.49887 * 14 12 11 16 16 Si 1.86801 * 120.00150 * 154.49784 * 14 12 11 17 17 H 1.48502 * 109.47369 * 179.97438 * 16 14 12 18 18 H 1.48491 * 109.47248 * 300.00087 * 16 14 12 19 19 H 1.48500 * 109.46897 * 60.00009 * 16 14 12 20 20 C 1.46500 * 120.00180 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.46974 * 244.46106 * 20 2 1 22 22 C 1.53001 * 109.47139 * 4.46375 * 20 2 1 23 23 C 1.50699 * 109.47163 * 124.46051 * 20 2 1 24 24 N 1.34775 * 120.00294 * 323.83808 * 23 20 2 25 25 O 1.21281 * 119.99844 * 143.84032 * 23 20 2 26 26 H 1.09002 * 109.47204 * 86.17868 * 1 2 3 27 27 H 1.09004 * 109.47271 * 206.18055 * 1 2 3 28 28 H 1.09000 * 109.47398 * 326.18621 * 1 2 3 29 29 H 1.09007 * 109.46669 * 60.00200 * 5 3 2 30 30 H 1.08991 * 109.47197 * 300.00241 * 5 3 2 31 31 H 1.07991 * 119.88026 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.74727 * 179.69519 * 8 7 6 33 33 H 1.07997 * 119.87620 * 180.02562 * 9 8 7 34 34 H 1.07996 * 120.12804 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00104 * 354.26601 * 15 14 12 36 36 H 1.09002 * 109.47065 * 60.00185 * 21 20 2 37 37 H 1.09002 * 109.46919 * 179.97438 * 21 20 2 38 38 H 1.08996 * 109.47339 * 299.99451 * 21 20 2 39 39 H 1.08996 * 109.47282 * 59.99829 * 22 20 2 40 40 H 1.09002 * 109.47337 * 180.02562 * 22 20 2 41 41 H 1.08998 * 109.46602 * 299.99956 * 22 20 2 42 42 H 0.97001 * 120.00176 * 5.16538 * 24 23 20 43 43 H 0.96998 * 120.00021 * 185.15719 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3646 3.6177 0.0002 7 6 2.7386 4.2061 1.1870 8 6 3.6341 5.2642 1.1900 9 6 4.1682 5.7376 0.0011 10 6 3.8141 5.1599 -1.1964 11 6 2.9051 4.0856 -1.2117 12 6 2.5335 3.4844 -2.4363 13 1 2.1974 2.4582 -2.4540 14 6 2.6014 4.2190 -3.6254 15 7 2.5125 5.5239 -3.5942 16 14 2.8190 3.3366 -5.2574 17 1 2.8603 4.3332 -6.3575 18 1 4.0886 2.5667 -5.2384 19 1 1.6804 2.4082 -5.4738 20 6 2.1975 -1.2687 -0.0006 21 6 2.9910 -1.3999 1.3009 22 6 1.2071 -2.4294 -0.1134 23 6 3.1449 -1.3012 -1.1721 24 7 2.7865 -0.7412 -2.3444 25 8 4.2299 -1.8314 -1.0599 26 1 -0.3634 0.0685 -1.0254 27 1 -0.3634 -0.9223 0.4534 28 1 -0.3634 0.8538 0.5719 29 1 0.7583 2.5302 0.8892 30 1 0.7590 2.5299 -0.8907 31 1 2.3292 3.8453 2.1188 32 1 3.9182 5.7232 2.1255 33 1 4.8654 6.5622 0.0153 34 1 4.2316 5.5299 -2.1212 35 1 2.3166 5.9768 -2.7591 36 1 2.3057 -1.3765 2.1483 37 1 3.5357 -2.3441 1.3007 38 1 3.6967 -0.5731 1.3812 39 1 0.6417 -2.3359 -1.0405 40 1 1.7520 -3.3734 -0.1133 41 1 0.5218 -2.4059 0.7340 42 1 1.9516 -0.2522 -2.4132 43 1 3.3635 -0.8269 -3.1193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434028179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:57 Heat of formation + Delta-G solvation = -58.556686 kcal Electronic energy + Delta-G solvation = -26332.026323 eV Core-core repulsion = 22762.679103 eV Total energy + Delta-G solvation = -3569.347220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63496 -38.64548 -37.54354 -35.89083 -33.86382 -33.24298 -32.77371 -31.26968 -29.22239 -28.15751 -26.85136 -26.07388 -24.93487 -23.26808 -21.18052 -20.94186 -19.62384 -18.63531 -17.72229 -17.30399 -16.86200 -16.32489 -15.42927 -15.14936 -14.90240 -14.50378 -14.21805 -14.00621 -13.91903 -13.64590 -13.22601 -13.03592 -12.66940 -12.59445 -12.35268 -12.11787 -11.97509 -11.95726 -11.79901 -11.63756 -11.35018 -11.25454 -11.16191 -10.86317 -10.49339 -10.43242 -9.85701 -9.65093 -9.40745 -9.36486 -9.17802 -8.97505 -8.47670 -7.55880 -7.51001 -7.13520 -4.43288 2.62196 2.80799 2.85722 3.10159 3.14778 3.24707 3.30076 3.33201 3.75222 3.98793 4.56848 4.65071 4.79319 5.02298 5.04818 5.25991 5.33563 5.39923 5.57022 5.59211 5.66260 5.77062 5.79393 5.83355 5.92896 5.99608 6.16719 6.29188 6.35273 6.41279 6.63758 6.67185 6.99842 7.04541 7.20317 7.40015 7.52144 7.62560 7.72548 7.80657 7.85220 7.95188 8.19940 8.33908 8.50905 8.69321 8.77614 8.92087 10.05894 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.006378 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.884035 B = 4388.872956 C = 5571.609416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.629 5.629 3 C 0.512 3.488 4 O -0.500 6.500 5 C -0.065 4.065 6 C -0.186 4.186 7 C -0.069 4.069 8 C -0.251 4.251 9 C -0.086 4.086 10 C -0.215 4.215 11 C 0.117 3.883 12 C -0.515 4.515 13 H 0.070 0.930 14 C 0.040 3.960 15 N -0.798 5.798 16 Si 1.056 2.944 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.277 1.277 20 C 0.157 3.843 21 C -0.147 4.147 22 C -0.150 4.150 23 C 0.532 3.468 24 N -0.844 5.844 25 O -0.544 6.544 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.299 0.701 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.400 0.600 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -11.432 3.503 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.369 5.369 3 C 0.301 3.699 4 O -0.372 6.372 5 C -0.104 4.104 6 C -0.188 4.188 7 C -0.087 4.087 8 C -0.271 4.271 9 C -0.105 4.105 10 C -0.234 4.234 11 C 0.115 3.885 12 C -0.543 4.543 13 H 0.088 0.912 14 C -0.182 4.182 15 N -0.422 5.422 16 Si 0.880 3.120 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.202 1.202 20 C 0.069 3.931 21 C -0.205 4.205 22 C -0.207 4.207 23 C 0.315 3.685 24 N -0.406 5.406 25 O -0.420 6.420 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.228 0.772 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.506 -11.485 2.119 13.883 hybrid contribution -0.401 0.089 1.340 1.401 sum -7.908 -11.396 3.459 14.296 Atomic orbital electron populations 1.21894 0.79740 1.03401 1.02053 1.48353 1.06724 1.04742 1.77047 1.21370 0.88661 0.84789 0.75091 1.90733 1.13908 1.86514 1.46011 1.20270 0.97662 0.89851 1.02631 1.19015 1.04618 1.01423 0.93766 1.20354 0.97037 0.95853 0.95458 1.20266 1.07175 1.03407 0.96226 1.20610 0.98364 0.98172 0.93308 1.21136 1.03090 1.02616 0.96547 1.17379 0.88687 0.90368 0.92103 1.20359 1.41323 1.00316 0.92306 0.91165 1.26885 0.91588 0.95290 1.04393 1.70444 1.28513 1.09682 1.33525 0.83767 0.77928 0.76024 0.74262 1.19863 1.19985 1.20231 1.20504 0.92206 0.85467 0.94910 1.22001 1.00380 1.04198 0.93959 1.22101 0.98694 0.96815 1.03096 1.20489 0.86970 0.76988 0.84009 1.43710 1.26794 1.57386 1.12727 1.90697 1.21955 1.46061 1.83278 0.92579 0.90633 0.90740 0.90624 0.88662 0.89672 0.89472 0.89411 0.87823 0.88702 0.92158 0.91040 0.90297 0.91378 0.90574 0.90429 0.77171 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.40 59.84 0.56 1.22 16 2 N -0.63 -8.60 2.12 -167.87 -0.36 -8.96 16 3 C 0.51 9.45 6.33 -10.98 -0.07 9.38 16 4 O -0.50 -11.67 13.34 5.56 0.07 -11.60 16 5 C -0.06 -1.19 3.78 -29.03 -0.11 -1.30 16 6 C -0.19 -4.34 4.43 -103.91 -0.46 -4.80 16 7 C -0.07 -1.55 9.66 -39.66 -0.38 -1.94 16 8 C -0.25 -5.78 10.05 -39.29 -0.39 -6.17 16 9 C -0.09 -2.07 10.02 -39.66 -0.40 -2.46 16 10 C -0.21 -5.60 7.95 -38.87 -0.31 -5.91 16 11 C 0.12 3.04 5.29 -106.82 -0.57 2.47 16 12 C -0.51 -12.95 8.07 -37.74 -0.30 -13.25 16 13 H 0.07 1.69 6.74 -52.49 -0.35 1.33 16 14 C 0.04 0.99 4.94 -17.34 -0.09 0.91 16 15 N -0.80 -20.70 12.32 55.55 0.68 -20.02 16 16 Si 1.06 21.11 30.00 -169.99 -5.10 16.01 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 20 C 0.16 2.17 0.97 -132.97 -0.13 2.04 16 21 C -0.15 -2.15 7.98 37.16 0.30 -1.86 16 22 C -0.15 -1.38 7.26 37.16 0.27 -1.11 16 23 C 0.53 9.10 5.34 -10.99 -0.06 9.04 16 24 N -0.84 -12.77 8.57 31.22 0.27 -12.50 16 25 O -0.54 -11.28 16.92 5.56 0.09 -11.19 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.50 5.64 -51.93 -0.29 0.21 16 28 H 0.07 0.65 6.60 -51.93 -0.34 0.30 16 29 H 0.08 1.17 7.32 -51.92 -0.38 0.79 16 30 H 0.10 1.71 7.03 -51.93 -0.36 1.35 16 31 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.10 2.80 6.51 -52.49 -0.34 2.45 16 35 H 0.30 7.98 6.70 -40.82 -0.27 7.70 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.00 7.88 -51.93 -0.41 0.60 16 38 H 0.08 1.46 6.50 -51.93 -0.34 1.13 16 39 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.55 6.71 -51.93 -0.35 0.20 16 42 H 0.40 5.49 8.00 -40.82 -0.33 5.17 16 43 H 0.40 5.75 8.93 -40.82 -0.36 5.39 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -32.98 347.11 -7.12 -40.11 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -5.88 Total: 16.67 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.14 Total: -13.75 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.60 Total: -41.48 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.10 Total: 16.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.98 -7.12 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434028179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.451 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds