Wall clock time and date at job start Tue Mar 31 2020 09:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00207 * 2 1 4 4 O 1.21275 * 120.00245 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99650 * 359.97438 * 3 2 1 6 6 C 1.50696 * 109.46751 * 179.97438 * 5 3 2 7 7 C 1.37643 * 120.12660 * 265.30459 * 6 5 3 8 8 C 1.38615 * 120.24522 * 180.32386 * 7 6 5 9 9 C 1.38661 * 120.50152 * 359.67484 * 8 7 6 10 10 C 1.37597 * 120.25027 * 359.97438 * 9 8 7 11 11 C 1.40697 * 120.12902 * 85.00430 * 6 5 3 12 12 C 1.41399 * 120.24121 * 359.97438 * 11 6 5 13 13 H 1.08001 * 119.99962 * 334.14221 * 12 11 6 14 14 C 1.39939 * 119.99941 * 154.14797 * 12 11 6 15 15 N 1.30824 * 120.00166 * 334.49887 * 14 12 11 16 16 Si 1.86801 * 120.00150 * 154.49784 * 14 12 11 17 17 H 1.48502 * 109.47369 * 179.97438 * 16 14 12 18 18 H 1.48491 * 109.47248 * 300.00087 * 16 14 12 19 19 H 1.48500 * 109.46897 * 60.00009 * 16 14 12 20 20 C 1.46500 * 120.00180 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.46974 * 244.46106 * 20 2 1 22 22 C 1.53001 * 109.47139 * 4.46375 * 20 2 1 23 23 C 1.50699 * 109.47163 * 124.46051 * 20 2 1 24 24 N 1.34775 * 120.00294 * 323.83808 * 23 20 2 25 25 O 1.21281 * 119.99844 * 143.84032 * 23 20 2 26 26 H 1.09002 * 109.47204 * 86.17868 * 1 2 3 27 27 H 1.09004 * 109.47271 * 206.18055 * 1 2 3 28 28 H 1.09000 * 109.47398 * 326.18621 * 1 2 3 29 29 H 1.09007 * 109.46669 * 60.00200 * 5 3 2 30 30 H 1.08991 * 109.47197 * 300.00241 * 5 3 2 31 31 H 1.07991 * 119.88026 * 0.02562 * 7 6 5 32 32 H 1.08002 * 119.74727 * 179.69519 * 8 7 6 33 33 H 1.07997 * 119.87620 * 180.02562 * 9 8 7 34 34 H 1.07996 * 120.12804 * 180.02562 * 10 9 8 35 35 H 0.97000 * 120.00104 * 354.26601 * 15 14 12 36 36 H 1.09002 * 109.47065 * 60.00185 * 21 20 2 37 37 H 1.09002 * 109.46919 * 179.97438 * 21 20 2 38 38 H 1.08996 * 109.47339 * 299.99451 * 21 20 2 39 39 H 1.08996 * 109.47282 * 59.99829 * 22 20 2 40 40 H 1.09002 * 109.47337 * 180.02562 * 22 20 2 41 41 H 1.08998 * 109.46602 * 299.99956 * 22 20 2 42 42 H 0.97001 * 120.00176 * 5.16538 * 24 23 20 43 43 H 0.96998 * 120.00021 * 185.15719 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4724 -0.0006 6 6 2.3646 3.6177 0.0002 7 6 2.7386 4.2061 1.1870 8 6 3.6341 5.2642 1.1900 9 6 4.1682 5.7376 0.0011 10 6 3.8141 5.1599 -1.1964 11 6 2.9051 4.0856 -1.2117 12 6 2.5335 3.4844 -2.4363 13 1 2.1974 2.4582 -2.4540 14 6 2.6014 4.2190 -3.6254 15 7 2.5125 5.5239 -3.5942 16 14 2.8190 3.3366 -5.2574 17 1 2.8603 4.3332 -6.3575 18 1 4.0886 2.5667 -5.2384 19 1 1.6804 2.4082 -5.4738 20 6 2.1975 -1.2687 -0.0006 21 6 2.9910 -1.3999 1.3009 22 6 1.2071 -2.4294 -0.1134 23 6 3.1449 -1.3012 -1.1721 24 7 2.7865 -0.7412 -2.3444 25 8 4.2299 -1.8314 -1.0599 26 1 -0.3634 0.0685 -1.0254 27 1 -0.3634 -0.9223 0.4534 28 1 -0.3634 0.8538 0.5719 29 1 0.7583 2.5302 0.8892 30 1 0.7590 2.5299 -0.8907 31 1 2.3292 3.8453 2.1188 32 1 3.9182 5.7232 2.1255 33 1 4.8654 6.5622 0.0153 34 1 4.2316 5.5299 -2.1212 35 1 2.3166 5.9768 -2.7591 36 1 2.3057 -1.3765 2.1483 37 1 3.5357 -2.3441 1.3007 38 1 3.6967 -0.5731 1.3812 39 1 0.6417 -2.3359 -1.0405 40 1 1.7520 -3.3734 -0.1133 41 1 0.5218 -2.4059 0.7340 42 1 1.9516 -0.2522 -2.4132 43 1 3.3635 -0.8269 -3.1193 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434028179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:56 Heat of formation + Delta-G solvation = -81.362821 kcal Electronic energy + Delta-G solvation = -26333.015271 eV Core-core repulsion = 22762.679103 eV Total energy + Delta-G solvation = -3570.336169 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89151 -40.17207 -39.20193 -37.18286 -35.71765 -34.53853 -34.10306 -32.72979 -31.08745 -29.07147 -28.44962 -27.03884 -26.77818 -24.42698 -22.83300 -22.65059 -21.17184 -19.92733 -19.52551 -18.56170 -18.09579 -17.53438 -16.84303 -16.73652 -16.38588 -15.95585 -15.83722 -15.41587 -15.37848 -15.11463 -14.56126 -14.20463 -13.96941 -13.86260 -13.65914 -13.61501 -13.33717 -13.23286 -13.00735 -12.93254 -12.72452 -12.58126 -12.42741 -12.34381 -12.22785 -12.00423 -11.46201 -11.19908 -11.15229 -10.82048 -10.69783 -10.62450 -9.63426 -9.43132 -9.40162 -9.03038 -6.35959 0.91303 1.00113 1.46933 1.48374 1.62651 1.75182 1.77892 2.08799 2.32223 2.59526 2.74106 3.54236 3.71261 3.78125 4.02584 4.08210 4.25886 4.29484 4.37969 4.48427 4.56890 4.61678 4.69694 4.70384 4.73920 4.80891 4.86634 4.95195 5.04230 5.08404 5.19331 5.23417 5.34994 5.52015 5.57681 5.80035 5.83094 5.86065 6.00503 6.06562 6.30725 6.33935 6.43802 6.48762 6.88354 7.06015 7.25313 7.36058 8.11443 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.006378 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.884035 B = 4388.872956 C = 5571.609416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.613 5.613 3 C 0.513 3.487 4 O -0.559 6.559 5 C -0.062 4.062 6 C -0.188 4.188 7 C -0.082 4.082 8 C -0.254 4.254 9 C -0.099 4.099 10 C -0.247 4.247 11 C 0.087 3.913 12 C -0.531 4.531 13 H 0.077 0.923 14 C 0.004 3.996 15 N -0.822 5.822 16 Si 1.100 2.900 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.239 1.239 20 C 0.157 3.843 21 C -0.143 4.143 22 C -0.143 4.143 23 C 0.521 3.479 24 N -0.837 5.837 25 O -0.592 6.592 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.284 0.716 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.408 0.592 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 -13.523 4.396 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.350 5.350 3 C 0.303 3.697 4 O -0.436 6.436 5 C -0.101 4.101 6 C -0.190 4.190 7 C -0.100 4.100 8 C -0.273 4.273 9 C -0.118 4.118 10 C -0.267 4.267 11 C 0.084 3.916 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.212 4.212 15 N -0.446 5.446 16 Si 0.918 3.082 17 H -0.202 1.202 18 H -0.204 1.204 19 H -0.162 1.162 20 C 0.069 3.931 21 C -0.202 4.202 22 C -0.200 4.200 23 C 0.306 3.694 24 N -0.398 5.398 25 O -0.472 6.472 26 H 0.091 0.909 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.238 0.762 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.602 -13.587 3.020 17.496 hybrid contribution 0.534 0.757 1.194 1.511 sum -10.068 -12.830 4.214 16.844 Atomic orbital electron populations 1.22344 0.76305 1.05817 1.03873 1.48240 1.08608 1.03283 1.74901 1.21249 0.87818 0.86000 0.74629 1.90733 1.16363 1.87453 1.49058 1.20286 0.96822 0.88396 1.04622 1.19544 1.04334 1.02100 0.93016 1.20801 0.96888 0.95621 0.96668 1.20676 1.06561 1.03302 0.96771 1.20871 0.98882 0.98752 0.93248 1.21137 1.04729 1.04331 0.96467 1.17786 0.89238 0.90793 0.93749 1.20510 1.42237 1.00577 0.92649 0.90470 1.28181 0.90258 0.95199 1.07554 1.70548 1.30894 1.10592 1.32549 0.83239 0.78956 0.75557 0.70417 1.20204 1.20437 1.16199 1.20617 0.92735 0.87002 0.92746 1.21958 1.00260 1.02219 0.95734 1.22155 0.97996 0.94373 1.05492 1.21229 0.86976 0.76113 0.85127 1.43704 1.26995 1.56646 1.12504 1.90665 1.24070 1.48292 1.84138 0.90874 0.87114 0.89795 0.87022 0.88067 0.86489 0.86760 0.87771 0.90200 0.90424 0.89228 0.91092 0.94850 0.89581 0.90393 0.87208 0.76240 0.76861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.40 127.77 1.20 1.95 16 2 N -0.61 -14.83 2.12 -803.42 -1.71 -16.53 16 3 C 0.51 18.12 6.33 87.66 0.56 18.68 16 4 O -0.56 -26.34 13.34 -3.01 -0.04 -26.38 16 5 C -0.06 -2.15 3.78 29.10 0.11 -2.04 16 6 C -0.19 -8.66 4.43 -19.41 -0.09 -8.75 16 7 C -0.08 -3.59 9.66 22.22 0.21 -3.37 16 8 C -0.25 -11.48 10.05 22.46 0.23 -11.25 16 9 C -0.10 -4.86 10.02 22.22 0.22 -4.64 16 10 C -0.25 -13.48 7.95 22.73 0.18 -13.30 16 11 C 0.09 4.60 5.29 -21.29 -0.11 4.49 16 12 C -0.53 -27.16 8.07 23.46 0.19 -26.97 16 13 H 0.08 3.70 6.74 -2.91 -0.02 3.68 16 14 C 0.00 0.22 4.94 85.26 0.42 0.64 16 15 N -0.82 -44.25 12.32 21.82 0.27 -43.98 16 16 Si 1.10 42.49 30.00 68.60 2.06 44.55 16 17 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 18 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.24 -7.72 7.11 99.48 0.71 -7.01 16 20 C 0.16 3.95 0.97 2.86 0.00 3.96 16 21 C -0.14 -4.01 7.98 71.98 0.57 -3.44 16 22 C -0.14 -1.99 7.26 71.98 0.52 -1.47 16 23 C 0.52 17.49 5.34 87.66 0.47 17.96 16 24 N -0.84 -24.52 8.57 -173.53 -1.49 -26.01 16 25 O -0.59 -25.07 16.92 -3.03 -0.05 -25.12 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.73 5.64 -2.38 -0.01 0.71 16 28 H 0.08 1.01 6.60 -2.39 -0.02 0.99 16 29 H 0.11 3.02 7.32 -2.38 -0.02 3.01 16 30 H 0.10 3.41 7.03 -2.39 -0.02 3.39 16 31 H 0.12 4.31 8.06 -2.92 -0.02 4.29 16 32 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.08 4.61 6.51 -2.91 -0.02 4.59 16 35 H 0.28 15.92 6.70 -92.71 -0.62 15.30 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 38 H 0.03 1.24 6.50 -2.39 -0.02 1.23 16 39 H 0.09 0.93 7.88 -2.39 -0.02 0.91 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 0.86 6.71 -2.39 -0.02 0.84 16 42 H 0.41 10.40 8.00 -92.71 -0.74 9.66 16 43 H 0.40 11.40 8.93 -92.71 -0.83 10.57 16 Total: -1.00 -77.79 347.11 3.36 -74.42 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.37 Total: 46.61 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 4.69 Total: -27.56 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.92 Total: -86.52 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.09 Total: -51.50 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.06 Total: 44.55 kcal Total: -77.79 3.36 -74.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434028179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.939 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds