Wall clock time and date at job start Tue Mar 31 2020 09:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47745 * 2 1 4 4 C 1.50698 * 109.47654 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99601 * 359.97438 * 4 3 2 6 6 O 1.34232 * 120.00438 * 180.02562 * 4 3 2 7 7 N 1.46909 * 109.47091 * 120.00554 * 2 1 3 8 8 C 1.46897 * 110.99438 * 295.32380 * 7 2 1 9 9 C 1.52994 * 109.46959 * 174.75410 * 8 7 2 10 10 C 1.50710 * 115.55009 * 280.91463 * 9 8 7 11 11 H 1.07999 * 119.99947 * 144.17878 * 10 9 8 12 12 C 1.37876 * 119.99404 * 324.18682 * 10 9 8 13 13 N 1.31508 * 120.00595 * 338.33537 * 12 10 9 14 14 Si 1.86803 * 119.99551 * 158.34270 * 12 10 9 15 15 H 1.48493 * 109.47606 * 89.99634 * 14 12 10 16 16 H 1.48498 * 109.47073 * 209.99768 * 14 12 10 17 17 H 1.48504 * 109.47259 * 329.99641 * 14 12 10 18 18 C 1.53001 * 117.50227 * 135.21088 * 9 8 7 19 19 C 1.52999 * 117.50359 * 66.58340 * 9 8 7 20 20 C 1.50708 * 109.46902 * 240.00046 * 2 1 3 21 21 C 1.38652 * 120.78790 * 256.82803 * 20 2 1 22 22 C 1.38203 * 119.16025 * 179.75271 * 21 20 2 23 23 N 1.31870 * 120.76388 * 0.54017 * 22 21 20 24 24 C 1.31867 * 121.72430 * 359.73629 * 23 22 21 25 25 C 1.38199 * 120.76825 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46516 * 300.00179 * 1 2 3 27 27 H 1.09001 * 109.46554 * 59.99830 * 1 2 3 28 28 H 1.08995 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00528 * 3 2 1 30 30 H 1.09004 * 109.47130 * 59.99747 * 3 2 1 31 31 H 0.96694 * 117.00199 * 179.97438 * 6 4 3 32 32 H 1.00902 * 110.99650 * 171.36875 * 7 2 1 33 33 H 1.09002 * 109.46934 * 294.75020 * 8 7 2 34 34 H 1.09001 * 109.47480 * 54.75069 * 8 7 2 35 35 H 0.97001 * 120.00528 * 185.06610 * 13 12 10 36 36 H 1.08996 * 117.49612 * 359.97438 * 18 9 8 37 37 H 1.09001 * 117.50327 * 145.01843 * 18 9 8 38 38 H 1.08997 * 117.50520 * 214.98262 * 19 9 8 39 39 H 1.09001 * 117.49475 * 359.97438 * 19 9 8 40 40 H 1.07998 * 120.42168 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.61776 * 180.25584 * 22 21 20 42 42 H 1.08002 * 119.61622 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.42358 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 8 4.1511 0.3959 -0.0006 6 8 4.2184 2.6048 -0.0002 7 7 2.0197 -0.6927 1.1994 8 6 1.6420 0.0349 2.4184 9 6 2.0531 -0.7796 3.6465 10 6 1.1337 -1.9174 4.0093 11 1 1.5412 -2.8352 4.4067 12 6 -0.2275 -1.7864 3.8338 13 7 -0.7700 -0.5902 3.7681 14 14 -1.3012 -3.3082 3.6897 15 1 -1.7652 -3.7165 5.0399 16 1 -2.4760 -3.0058 2.8330 17 1 -0.5161 -4.4122 3.0813 18 6 2.7400 -0.0332 4.7919 19 6 3.5499 -0.9736 3.8970 20 6 2.0323 -0.7104 -1.2305 21 6 2.5247 -2.0042 -1.1518 22 6 2.9720 -2.6257 -2.3023 23 7 2.9438 -1.9988 -3.4622 24 6 2.4876 -0.7665 -3.5734 25 6 2.0183 -0.0838 -2.4673 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 5.1840 2.5541 -0.0003 32 1 3.0183 -0.8303 1.1551 33 1 2.1479 1.0003 2.4367 34 1 0.5632 0.1899 2.4296 35 1 -1.7343 -0.4970 3.7185 36 1 2.8995 1.0382 4.6702 37 1 2.5270 -0.3648 5.8081 38 1 3.8698 -1.9239 4.3246 39 1 4.2419 -0.5212 3.1866 40 1 2.5544 -2.5213 -0.2041 41 1 3.3532 -3.6348 -2.2502 42 1 2.4798 -0.2856 -4.5404 43 1 1.6463 0.9253 -2.5647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592323744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:08 Heat of formation + Delta-G solvation = -16.683829 kcal Electronic energy + Delta-G solvation = -26429.841329 eV Core-core repulsion = 22862.309852 eV Total energy + Delta-G solvation = -3567.531477 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91745 -39.63283 -37.73624 -36.28035 -35.65164 -32.15404 -31.87117 -31.11397 -29.85563 -28.27795 -25.83237 -25.03362 -23.29622 -22.81025 -21.94063 -21.12398 -19.40213 -18.78702 -18.03586 -17.26138 -16.49429 -16.02732 -15.84418 -15.75793 -15.18099 -14.69933 -14.50863 -14.01217 -13.87216 -13.53519 -13.41221 -13.26847 -12.92385 -12.75067 -12.35720 -11.81036 -11.66664 -11.54782 -11.44848 -11.40796 -11.09871 -10.96405 -10.90145 -10.53021 -10.44093 -10.33126 -10.09579 -9.38511 -9.24017 -9.18124 -9.14057 -8.88079 -8.67033 -7.96808 -7.57029 -6.06980 -3.98242 1.37318 1.54743 2.25979 3.06448 3.29380 3.38117 3.46253 4.05714 4.41521 4.51559 4.65150 4.65553 4.87696 5.01764 5.14672 5.23081 5.29384 5.45773 5.48714 5.58847 5.63457 5.73464 5.86003 5.98689 6.08693 6.12160 6.14239 6.30241 6.39322 6.48804 6.54610 6.63159 6.68609 6.70581 6.74352 6.93564 6.97553 7.06897 7.34352 7.61572 7.88583 7.95738 8.00356 8.18153 8.29212 8.53301 8.92124 9.56585 10.97337 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.006163 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.403227 B = 4542.465522 C = 5530.384179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.167 3.833 3 C -0.150 4.150 4 C 0.478 3.522 5 O -0.501 6.501 6 O -0.520 6.520 7 N -0.659 5.659 8 C 0.083 3.917 9 C 0.068 3.932 10 C -0.476 4.476 11 H 0.058 0.942 12 C 0.082 3.918 13 N -0.876 5.876 14 Si 0.884 3.116 15 H -0.285 1.285 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.206 4.206 19 C -0.212 4.212 20 C -0.009 4.009 21 C -0.133 4.133 22 C 0.091 3.909 23 N -0.495 5.495 24 C 0.089 3.911 25 C -0.182 4.182 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.406 0.594 32 H 0.344 0.656 33 H -0.013 1.013 34 H 0.130 0.870 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 5.755 -10.863 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.074 3.926 3 C -0.190 4.190 4 C 0.321 3.679 5 O -0.388 6.388 6 O -0.332 6.332 7 N -0.293 5.293 8 C -0.045 4.045 9 C 0.067 3.933 10 C -0.513 4.513 11 H 0.076 0.924 12 C -0.120 4.120 13 N -0.513 5.513 14 Si 0.711 3.289 15 H -0.211 1.211 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.244 4.244 19 C -0.249 4.249 20 C -0.018 4.018 21 C -0.153 4.153 22 C -0.066 4.066 23 N -0.205 5.205 24 C -0.068 4.068 25 C -0.203 4.203 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.265 0.735 32 H 0.167 0.833 33 H 0.005 0.995 34 H 0.148 0.852 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.798 4.690 -11.654 13.124 hybrid contribution 0.545 0.561 0.806 1.123 sum 4.343 5.251 -10.848 12.810 Atomic orbital electron populations 1.21822 0.91377 1.03761 1.01956 1.19643 0.96075 0.87051 0.89783 1.22423 0.87468 1.02672 1.06430 1.23548 0.91851 0.80977 0.71547 1.90676 1.70367 1.32788 1.45013 1.84541 1.26458 1.36351 1.85863 1.60593 1.20250 1.48822 0.99633 1.21949 1.04930 0.90462 0.87153 1.18851 0.87926 0.95594 0.90903 1.20354 0.90414 0.98457 1.42069 0.92409 1.24795 0.97706 0.95440 0.94103 1.69848 1.10885 1.21664 1.48946 0.86737 0.79921 0.84302 0.77899 1.21132 1.21131 1.19648 1.22998 1.08841 0.94896 0.97680 1.22803 0.97511 1.00246 1.04370 1.20149 0.93468 0.94355 0.93823 1.22158 0.97193 0.95265 1.00692 1.22737 0.96284 0.99662 0.87879 1.67593 1.15252 1.09779 1.27863 1.22518 0.95315 0.90864 0.98121 1.21909 1.03476 1.01313 0.93572 0.90275 0.93043 0.90997 0.87732 0.86462 0.73549 0.83275 0.99518 0.85247 0.92948 0.92267 0.90405 0.90737 0.92083 0.83232 0.83135 0.83514 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.34 37.16 0.31 -1.76 16 2 C 0.17 2.64 0.54 -132.75 -0.07 2.57 16 3 C -0.15 -2.05 4.00 -27.89 -0.11 -2.17 16 4 C 0.48 6.87 7.69 36.00 0.28 7.15 16 5 O -0.50 -8.46 13.41 -18.75 -0.25 -8.71 16 6 O -0.52 -6.06 13.42 -39.26 -0.53 -6.59 16 7 N -0.66 -12.63 4.86 -101.14 -0.49 -13.13 16 8 C 0.08 1.77 4.45 -3.83 -0.02 1.76 16 9 C 0.07 1.63 1.93 -155.66 -0.30 1.33 16 10 C -0.48 -12.56 8.98 -34.44 -0.31 -12.87 16 11 H 0.06 1.56 7.91 -52.49 -0.41 1.15 16 12 C 0.08 2.13 5.05 -17.82 -0.09 2.04 16 13 N -0.88 -22.73 11.12 55.43 0.62 -22.12 16 14 Si 0.88 20.51 29.59 -169.99 -5.03 15.48 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.21 -4.67 9.88 -26.73 -0.26 -4.93 16 19 C -0.21 -4.64 9.63 -26.73 -0.26 -4.89 16 20 C -0.01 -0.14 3.02 -104.31 -0.31 -0.46 16 21 C -0.13 -2.14 9.06 -39.44 -0.36 -2.50 16 22 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 23 N -0.50 -7.52 10.36 -13.26 -0.14 -7.66 16 24 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 25 C -0.18 -2.40 9.12 -39.44 -0.36 -2.76 16 26 H 0.08 1.37 6.41 -51.93 -0.33 1.03 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.13 6.75 -51.93 -0.35 0.78 16 30 H 0.12 1.66 6.46 -51.93 -0.34 1.33 16 31 H 0.41 3.12 9.10 45.56 0.41 3.53 16 32 H 0.34 6.82 5.41 -39.29 -0.21 6.60 16 33 H -0.01 -0.27 6.30 -51.93 -0.33 -0.60 16 34 H 0.13 3.01 3.48 -51.93 -0.18 2.82 16 35 H 0.26 6.48 8.32 -40.82 -0.34 6.14 16 36 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 40 H 0.15 2.56 7.06 -52.49 -0.37 2.19 16 41 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.13 1.33 6.76 -52.49 -0.35 0.97 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -29.58 346.98 -7.83 -37.41 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -4.98 Total: 15.44 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.26 Total: -15.37 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.01 Total: -42.90 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.78 Total: -15.29 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.58 -7.83 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592323744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.723 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds