Wall clock time and date at job start Tue Mar 31 2020 09:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47745 * 2 1 4 4 C 1.50698 * 109.47654 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99601 * 359.97438 * 4 3 2 6 6 O 1.34232 * 120.00438 * 180.02562 * 4 3 2 7 7 N 1.46909 * 109.47091 * 120.00554 * 2 1 3 8 8 C 1.46897 * 110.99438 * 295.32380 * 7 2 1 9 9 C 1.52994 * 109.46959 * 174.75410 * 8 7 2 10 10 C 1.50710 * 115.55009 * 280.91463 * 9 8 7 11 11 H 1.07999 * 119.99947 * 144.17878 * 10 9 8 12 12 C 1.37876 * 119.99404 * 324.18682 * 10 9 8 13 13 N 1.31508 * 120.00595 * 338.33537 * 12 10 9 14 14 Si 1.86803 * 119.99551 * 158.34270 * 12 10 9 15 15 H 1.48493 * 109.47606 * 89.99634 * 14 12 10 16 16 H 1.48498 * 109.47073 * 209.99768 * 14 12 10 17 17 H 1.48504 * 109.47259 * 329.99641 * 14 12 10 18 18 C 1.53001 * 117.50227 * 135.21088 * 9 8 7 19 19 C 1.52999 * 117.50359 * 66.58340 * 9 8 7 20 20 C 1.50708 * 109.46902 * 240.00046 * 2 1 3 21 21 C 1.38652 * 120.78790 * 256.82803 * 20 2 1 22 22 C 1.38203 * 119.16025 * 179.75271 * 21 20 2 23 23 N 1.31870 * 120.76388 * 0.54017 * 22 21 20 24 24 C 1.31867 * 121.72430 * 359.73629 * 23 22 21 25 25 C 1.38199 * 120.76825 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46516 * 300.00179 * 1 2 3 27 27 H 1.09001 * 109.46554 * 59.99830 * 1 2 3 28 28 H 1.08995 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00528 * 3 2 1 30 30 H 1.09004 * 109.47130 * 59.99747 * 3 2 1 31 31 H 0.96694 * 117.00199 * 179.97438 * 6 4 3 32 32 H 1.00902 * 110.99650 * 171.36875 * 7 2 1 33 33 H 1.09002 * 109.46934 * 294.75020 * 8 7 2 34 34 H 1.09001 * 109.47480 * 54.75069 * 8 7 2 35 35 H 0.97001 * 120.00528 * 185.06610 * 13 12 10 36 36 H 1.08996 * 117.49612 * 359.97438 * 18 9 8 37 37 H 1.09001 * 117.50327 * 145.01843 * 18 9 8 38 38 H 1.08997 * 117.50520 * 214.98262 * 19 9 8 39 39 H 1.09001 * 117.49475 * 359.97438 * 19 9 8 40 40 H 1.07998 * 120.42168 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.61776 * 180.25584 * 22 21 20 42 42 H 1.08002 * 119.61622 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.42358 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 -0.0006 5 8 4.1511 0.3959 -0.0006 6 8 4.2184 2.6048 -0.0002 7 7 2.0197 -0.6927 1.1994 8 6 1.6420 0.0349 2.4184 9 6 2.0531 -0.7796 3.6465 10 6 1.1337 -1.9174 4.0093 11 1 1.5412 -2.8352 4.4067 12 6 -0.2275 -1.7864 3.8338 13 7 -0.7700 -0.5902 3.7681 14 14 -1.3012 -3.3082 3.6897 15 1 -1.7652 -3.7165 5.0399 16 1 -2.4760 -3.0058 2.8330 17 1 -0.5161 -4.4122 3.0813 18 6 2.7400 -0.0332 4.7919 19 6 3.5499 -0.9736 3.8970 20 6 2.0323 -0.7104 -1.2305 21 6 2.5247 -2.0042 -1.1518 22 6 2.9720 -2.6257 -2.3023 23 7 2.9438 -1.9988 -3.4622 24 6 2.4876 -0.7665 -3.5734 25 6 2.0183 -0.0838 -2.4673 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 5.1840 2.5541 -0.0003 32 1 3.0183 -0.8303 1.1551 33 1 2.1479 1.0003 2.4367 34 1 0.5632 0.1899 2.4296 35 1 -1.7343 -0.4970 3.7185 36 1 2.8995 1.0382 4.6702 37 1 2.5270 -0.3648 5.8081 38 1 3.8698 -1.9239 4.3246 39 1 4.2419 -0.5212 3.1866 40 1 2.5544 -2.5213 -0.2041 41 1 3.3532 -3.6348 -2.2502 42 1 2.4798 -0.2856 -4.5404 43 1 1.6463 0.9253 -2.5647 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592323744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:07 Heat of formation + Delta-G solvation = -35.033778 kcal Electronic energy + Delta-G solvation = -26430.637043 eV Core-core repulsion = 22862.309852 eV Total energy + Delta-G solvation = -3568.327191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05422 -40.70621 -39.15952 -37.71752 -36.83328 -34.13499 -33.16457 -32.21366 -31.08151 -29.46777 -27.69970 -26.61081 -24.47602 -24.02307 -23.05770 -22.86182 -20.97249 -20.24801 -19.07843 -18.69452 -17.62871 -17.57971 -16.99053 -16.91425 -16.56493 -16.26401 -16.01388 -15.32924 -15.25800 -14.96617 -14.76364 -14.47784 -14.31538 -13.90662 -13.68111 -13.46350 -13.05424 -12.90255 -12.83605 -12.76317 -12.53893 -12.52406 -12.32629 -12.27801 -12.09649 -11.85480 -11.55489 -11.16777 -11.00349 -10.53645 -10.37087 -10.33093 -9.97030 -9.86989 -9.03172 -8.04854 -6.01255 0.29986 0.42714 1.18425 1.41408 1.47464 1.57460 2.09130 2.47782 2.96102 3.01021 3.27099 3.50234 3.66163 3.68768 3.77849 4.08943 4.19667 4.24514 4.33296 4.36586 4.40935 4.50314 4.55254 4.62393 4.75775 4.79361 4.82506 4.89210 4.92159 4.98317 5.00321 5.14067 5.21698 5.29295 5.38209 5.51569 5.54677 5.58036 5.71278 5.88386 6.13697 6.47896 6.48731 6.79938 6.90929 6.99151 7.10108 7.54529 8.97985 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.006163 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.403227 B = 4542.465522 C = 5530.384179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.167 3.833 3 C -0.148 4.148 4 C 0.480 3.520 5 O -0.532 6.532 6 O -0.512 6.512 7 N -0.670 5.670 8 C 0.098 3.902 9 C 0.043 3.957 10 C -0.501 4.501 11 H 0.039 0.961 12 C 0.054 3.946 13 N -0.886 5.886 14 Si 0.931 3.069 15 H -0.283 1.283 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.205 4.205 19 C -0.196 4.196 20 C -0.017 4.017 21 C -0.155 4.155 22 C 0.084 3.916 23 N -0.513 5.513 24 C 0.088 3.912 25 C -0.177 4.177 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.141 0.859 30 H 0.113 0.887 31 H 0.424 0.576 32 H 0.340 0.660 33 H -0.009 1.009 34 H 0.114 0.886 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.165 0.835 42 H 0.182 0.818 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 7.323 -12.808 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 C -0.187 4.187 4 C 0.324 3.676 5 O -0.421 6.421 6 O -0.326 6.326 7 N -0.304 5.304 8 C -0.030 4.030 9 C 0.042 3.958 10 C -0.538 4.538 11 H 0.057 0.943 12 C -0.148 4.148 13 N -0.523 5.523 14 Si 0.758 3.242 15 H -0.209 1.209 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.244 4.244 19 C -0.233 4.233 20 C -0.025 4.025 21 C -0.175 4.175 22 C -0.071 4.071 23 N -0.223 5.223 24 C -0.069 4.069 25 C -0.197 4.197 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.131 0.869 31 H 0.285 0.715 32 H 0.162 0.838 33 H 0.009 0.991 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.199 0.801 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.745 6.280 -13.597 15.438 hybrid contribution 0.605 0.108 1.397 1.526 sum 4.350 6.387 -12.200 14.442 Atomic orbital electron populations 1.21765 0.91506 1.02319 1.02760 1.19647 0.95880 0.88370 0.88643 1.22350 0.87370 1.01058 1.07958 1.23605 0.92135 0.81025 0.70845 1.90681 1.70977 1.33928 1.46515 1.84492 1.28083 1.34850 1.85165 1.60479 1.19969 1.49742 1.00183 1.21628 1.03725 0.90328 0.87303 1.19037 0.88587 0.95843 0.92324 1.20493 0.91449 0.98751 1.43065 0.94262 1.25222 0.98349 0.97319 0.93899 1.69908 1.11145 1.22442 1.48848 0.86001 0.78690 0.81754 0.77745 1.20934 1.20442 1.20431 1.22975 1.08796 0.95694 0.96934 1.22723 0.96759 0.99895 1.03934 1.20174 0.93794 0.94113 0.94455 1.22074 0.99009 0.96148 1.00255 1.22929 0.96202 1.00389 0.87628 1.67656 1.16002 1.10937 1.27670 1.23135 0.93842 0.90230 0.99657 1.22203 1.02588 1.02543 0.92319 0.92113 0.89484 0.93529 0.84089 0.86946 0.71461 0.83757 0.99094 0.86866 0.92701 0.90916 0.91447 0.91152 0.90867 0.85418 0.81812 0.80130 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.34 71.98 0.60 -3.23 16 2 C 0.17 5.06 0.54 2.78 0.00 5.07 16 3 C -0.15 -3.67 4.00 29.84 0.12 -3.55 16 4 C 0.48 12.70 7.69 71.24 0.55 13.25 16 5 O -0.53 -17.26 13.41 21.97 0.29 -16.96 16 6 O -0.51 -10.42 13.42 -51.43 -0.69 -11.11 16 7 N -0.67 -25.80 4.86 -473.89 -2.30 -28.10 16 8 C 0.10 4.23 4.45 86.30 0.38 4.61 16 9 C 0.04 2.07 1.93 -52.93 -0.10 1.97 16 10 C -0.50 -27.02 8.98 25.60 0.23 -26.79 16 11 H 0.04 2.20 7.91 -2.91 -0.02 2.17 16 12 C 0.05 2.82 5.05 84.66 0.43 3.25 16 13 N -0.89 -46.24 11.12 21.45 0.24 -46.00 16 14 Si 0.93 42.62 29.59 68.60 2.03 44.65 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 C -0.21 -9.33 9.88 30.60 0.30 -9.03 16 19 C -0.20 -8.59 9.63 30.60 0.29 -8.29 16 20 C -0.02 -0.49 3.02 -19.66 -0.06 -0.55 16 21 C -0.15 -4.98 9.06 22.36 0.20 -4.78 16 22 C 0.08 2.47 11.18 84.68 0.95 3.42 16 23 N -0.51 -14.66 10.36 -195.85 -2.03 -16.69 16 24 C 0.09 2.06 11.18 84.68 0.95 3.01 16 25 C -0.18 -4.07 9.12 22.36 0.20 -3.87 16 26 H 0.06 2.07 6.41 -2.39 -0.02 2.05 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.14 2.41 6.75 -2.39 -0.02 2.39 16 30 H 0.11 2.96 6.46 -2.38 -0.02 2.94 16 31 H 0.42 5.33 9.10 -74.06 -0.67 4.65 16 32 H 0.34 13.59 5.41 -89.69 -0.49 13.11 16 33 H -0.01 -0.36 6.30 -2.39 -0.02 -0.38 16 34 H 0.11 5.30 3.48 -2.39 -0.01 5.29 16 35 H 0.26 13.09 8.32 -92.71 -0.77 12.32 16 36 H 0.07 3.06 8.09 -2.39 -0.02 3.04 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.07 3.01 8.11 -2.39 -0.02 2.99 16 40 H 0.13 4.60 7.06 -2.91 -0.02 4.58 16 41 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.16 2.53 6.76 -2.91 -0.02 2.51 16 Total: -1.00 -63.94 346.98 2.48 -61.45 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.11 Total: 38.28 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 5.05 Total: -25.53 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -4.09 Total: -90.79 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.40 Total: -28.07 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -63.94 2.48 -61.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592323744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.421 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds