Wall clock time and date at job start Tue Mar 31 2020 09:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47126 * 2 1 4 4 C 1.53004 * 109.46883 * 120.00028 * 2 1 3 5 5 N 1.46496 * 109.47109 * 64.99811 * 4 2 1 6 6 C 1.34774 * 119.99619 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00550 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99967 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.47105 * 179.97438 * 8 6 5 10 10 C 1.34776 * 119.99692 * 179.97438 * 9 8 6 11 11 O 1.21592 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.47634 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.40016 * 119.89772 * 0.24248 * 12 10 9 14 14 C 1.36315 * 120.10695 * 180.25948 * 13 12 10 15 15 C 1.40885 * 119.89334 * 359.47978 * 14 13 12 16 16 C 1.41111 * 120.10536 * 180.30167 * 15 14 13 17 17 H 1.07996 * 120.00198 * 154.52656 * 16 15 14 18 18 C 1.40227 * 119.99546 * 334.52369 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.06447 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06669 * 18 16 15 21 21 H 1.48503 * 109.47357 * 59.99742 * 20 18 16 22 22 H 1.48498 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47336 * 300.00015 * 20 18 16 24 24 C 1.40888 * 119.79168 * 0.27218 * 15 14 13 25 25 C 1.36313 * 119.89186 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46799 * 300.00073 * 1 2 3 28 28 H 1.08996 * 109.47044 * 60.00159 * 1 2 3 29 29 H 1.08994 * 109.47185 * 239.99554 * 2 1 3 30 30 H 1.08993 * 109.46826 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47029 * 299.99850 * 3 2 1 32 32 H 1.08997 * 109.47038 * 60.00010 * 3 2 1 33 33 H 1.09000 * 109.47174 * 304.99826 * 4 2 1 34 34 H 1.08999 * 109.46763 * 185.00397 * 4 2 1 35 35 H 0.96996 * 119.99928 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.47118 * 59.99684 * 8 6 5 37 37 H 1.09002 * 109.46517 * 299.99857 * 8 6 5 38 38 H 0.97001 * 120.00109 * 0.02562 * 9 8 6 39 39 H 1.08000 * 119.94850 * 0.03457 * 13 12 10 40 40 H 1.08004 * 120.05046 * 179.74690 * 14 13 12 41 41 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.05374 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.94443 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 1.9964 -2.9681 2.1908 7 8 2.6272 -2.5515 3.1391 8 6 1.5981 -4.4204 2.1302 9 7 2.0874 -5.1112 3.3259 10 6 1.8470 -6.4272 3.4895 11 8 1.2237 -7.0410 2.6450 12 6 2.3396 -7.1233 4.6947 13 6 3.0518 -6.4130 5.6688 14 6 3.5131 -7.0526 6.7807 15 6 3.2628 -8.4281 6.9542 16 6 3.7327 -9.0932 8.1066 17 1 3.2324 -9.9834 8.4581 18 6 4.8496 -8.5983 8.7952 19 7 5.6489 -7.7435 8.2146 20 14 5.1943 -9.1614 10.5426 21 1 5.3859 -10.6339 10.5596 22 1 6.4243 -8.4969 11.0433 23 1 4.0470 -8.8016 11.4142 24 6 2.5412 -9.1374 5.9738 25 6 2.0891 -8.4906 4.8624 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.1489 -2.4663 0.4316 36 1 2.0327 -4.8796 1.2423 37 1 0.5118 -4.4976 2.0845 38 1 2.5837 -4.6213 4.0001 39 1 3.2391 -5.3576 5.5372 40 1 4.0659 -6.5047 7.5295 41 1 6.4213 -7.4009 8.6912 42 1 2.3465 -10.1919 6.1027 43 1 1.5362 -9.0336 4.1101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647120722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:52 Heat of formation + Delta-G solvation = -77.216943 kcal Electronic energy + Delta-G solvation = -23452.853621 eV Core-core repulsion = 19882.697231 eV Total energy + Delta-G solvation = -3570.156390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.13185 -38.84700 -37.18538 -36.88027 -33.92372 -33.83717 -33.57653 -30.40287 -29.41569 -28.38357 -27.63496 -26.20589 -25.06575 -21.90042 -21.00560 -20.91984 -20.41861 -19.66136 -17.72312 -17.46916 -16.61898 -16.19985 -15.95407 -15.49161 -15.28717 -14.98640 -14.25072 -14.18223 -13.95103 -13.83658 -13.38317 -13.22826 -13.05669 -12.86818 -12.65640 -12.54978 -12.23156 -12.03739 -11.87192 -11.59317 -11.38026 -11.34259 -11.23693 -11.17677 -10.96598 -10.61327 -10.08108 -10.02058 -9.51832 -9.35316 -9.32616 -9.02809 -8.68062 -7.68178 -7.50967 -6.99493 -4.57595 2.24855 2.45289 2.81439 2.94790 2.96906 3.00711 3.07650 3.76357 3.87395 3.88611 4.28871 4.42448 4.54509 4.59043 4.62114 5.08027 5.17895 5.23970 5.36909 5.37403 5.39689 5.42814 5.51926 5.61236 5.65869 5.80007 5.85362 6.04127 6.13426 6.17981 6.34509 6.79208 6.83033 6.86031 7.06442 7.16620 7.23401 7.47104 7.68216 7.82700 7.89372 7.98219 8.10281 8.24576 8.43475 8.66037 8.78531 9.03918 9.92523 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.002392 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.584875 B =11703.208630 C =12680.833207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.122 3.878 5 N -0.730 5.730 6 C 0.509 3.491 7 O -0.532 6.532 8 C 0.106 3.894 9 N -0.732 5.732 10 C 0.575 3.425 11 O -0.578 6.578 12 C -0.284 4.284 13 C -0.061 4.061 14 C -0.177 4.177 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.073 3.927 19 N -0.772 5.772 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.021 4.021 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.409 0.591 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 14.533 -11.907 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 C -0.203 4.203 4 C -0.001 4.001 5 N -0.383 5.383 6 C 0.295 3.705 7 O -0.408 6.408 8 C -0.022 4.022 9 N -0.389 5.389 10 C 0.370 3.630 11 O -0.461 6.461 12 C -0.288 4.288 13 C -0.081 4.081 14 C -0.196 4.196 15 C 0.126 3.874 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.395 5.395 20 Si 0.738 3.262 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.258 4.258 25 C -0.041 4.041 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.248 0.752 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.950 14.568 -11.772 19.373 hybrid contribution 0.313 -0.009 0.599 0.676 sum -4.637 14.560 -11.173 18.929 Atomic orbital electron populations 1.21888 0.94580 1.02069 1.02229 1.21369 0.96561 0.97020 0.97823 1.21763 1.01349 0.94899 1.02315 1.21457 1.00272 0.80160 0.98220 1.45918 1.58605 1.09851 1.23952 1.20773 0.79100 0.88410 0.82250 1.90719 1.39335 1.77671 1.33044 1.20887 1.01125 0.88504 0.91727 1.45698 1.59978 1.10284 1.22906 1.18590 0.77905 0.80029 0.86440 1.90627 1.43398 1.66449 1.45586 1.18825 1.16633 0.95256 0.98104 1.20542 0.96099 0.97108 0.94307 1.20982 1.05181 0.94703 0.98764 1.17801 0.87443 0.91546 0.90640 1.19812 1.09715 1.10002 1.07491 0.89740 1.26106 0.95047 0.93555 1.00088 1.69735 1.09966 1.22474 1.37305 0.86250 0.78679 0.80035 0.81217 1.18693 1.20070 1.18486 1.20712 1.10261 0.98459 0.96401 1.20350 0.95133 0.92582 0.95997 0.92492 0.92308 0.92327 0.90439 0.92262 0.92121 0.92243 0.91282 0.91313 0.76309 0.88954 0.88967 0.75179 0.89050 0.86167 0.90156 0.88346 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.07 37.16 0.34 -0.45 16 2 C -0.11 -0.61 2.96 -90.61 -0.27 -0.88 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C 0.12 1.01 5.06 -4.04 -0.02 0.99 16 5 N -0.73 -6.51 5.28 -60.29 -0.32 -6.83 16 6 C 0.51 6.58 7.90 -10.98 -0.09 6.49 16 7 O -0.53 -8.93 15.67 5.56 0.09 -8.84 16 8 C 0.11 1.45 6.15 -5.19 -0.03 1.42 16 9 N -0.73 -13.22 5.48 -62.49 -0.34 -13.56 16 10 C 0.58 12.50 7.76 -12.43 -0.10 12.41 16 11 O -0.58 -13.56 16.32 5.29 0.09 -13.47 16 12 C -0.28 -6.68 5.89 -104.73 -0.62 -7.30 16 13 C -0.06 -1.43 9.47 -39.61 -0.38 -1.81 16 14 C -0.18 -4.49 8.63 -39.27 -0.34 -4.82 16 15 C 0.13 3.35 5.57 -106.80 -0.59 2.75 16 16 C -0.44 -11.16 9.05 -37.75 -0.34 -11.51 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 19 N -0.77 -18.93 10.95 55.56 0.61 -18.32 16 20 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 25 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 26 H 0.06 0.29 7.18 -51.93 -0.37 -0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.40 2.47 7.65 -40.82 -0.31 2.16 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.41 7.48 5.44 -40.82 -0.22 7.26 16 39 H 0.09 1.91 6.37 -52.49 -0.33 1.58 16 40 H 0.12 3.09 6.18 -52.48 -0.32 2.76 16 41 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 42 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -30.65 361.85 -8.56 -39.21 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.17 Total: 12.38 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.94 Total: -8.58 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.05 Total: -38.71 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.31 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.65 -8.56 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647120722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.003 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds