Wall clock time and date at job start Tue Mar 31 2020 09:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47126 * 2 1 4 4 C 1.53004 * 109.46883 * 120.00028 * 2 1 3 5 5 N 1.46496 * 109.47109 * 64.99811 * 4 2 1 6 6 C 1.34774 * 119.99619 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00550 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99967 * 180.02562 * 6 5 4 9 9 N 1.46502 * 109.47105 * 179.97438 * 8 6 5 10 10 C 1.34776 * 119.99692 * 179.97438 * 9 8 6 11 11 O 1.21592 * 119.99839 * 359.97438 * 10 9 8 12 12 C 1.47634 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.40016 * 119.89772 * 0.24248 * 12 10 9 14 14 C 1.36315 * 120.10695 * 180.25948 * 13 12 10 15 15 C 1.40885 * 119.89334 * 359.47978 * 14 13 12 16 16 C 1.41111 * 120.10536 * 180.30167 * 15 14 13 17 17 H 1.07996 * 120.00198 * 154.52656 * 16 15 14 18 18 C 1.40227 * 119.99546 * 334.52369 * 16 15 14 19 19 N 1.30644 * 120.00033 * 343.06447 * 18 16 15 20 20 Si 1.86799 * 119.99848 * 163.06669 * 18 16 15 21 21 H 1.48503 * 109.47357 * 59.99742 * 20 18 16 22 22 H 1.48498 * 109.47368 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47336 * 300.00015 * 20 18 16 24 24 C 1.40888 * 119.79168 * 0.27218 * 15 14 13 25 25 C 1.36313 * 119.89186 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46799 * 300.00073 * 1 2 3 28 28 H 1.08996 * 109.47044 * 60.00159 * 1 2 3 29 29 H 1.08994 * 109.47185 * 239.99554 * 2 1 3 30 30 H 1.08993 * 109.46826 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47029 * 299.99850 * 3 2 1 32 32 H 1.08997 * 109.47038 * 60.00010 * 3 2 1 33 33 H 1.09000 * 109.47174 * 304.99826 * 4 2 1 34 34 H 1.08999 * 109.46763 * 185.00397 * 4 2 1 35 35 H 0.96996 * 119.99928 * 0.02562 * 5 4 2 36 36 H 1.09000 * 109.47118 * 59.99684 * 8 6 5 37 37 H 1.09002 * 109.46517 * 299.99857 * 8 6 5 38 38 H 0.97001 * 120.00109 * 0.02562 * 9 8 6 39 39 H 1.08000 * 119.94850 * 0.03457 * 13 12 10 40 40 H 1.08004 * 120.05046 * 179.74690 * 14 13 12 41 41 H 0.97005 * 119.99903 * 179.97438 * 19 18 16 42 42 H 1.08007 * 120.05374 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.94443 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 1.9964 -2.9681 2.1908 7 8 2.6272 -2.5515 3.1391 8 6 1.5981 -4.4204 2.1302 9 7 2.0874 -5.1112 3.3259 10 6 1.8470 -6.4272 3.4895 11 8 1.2237 -7.0410 2.6450 12 6 2.3396 -7.1233 4.6947 13 6 3.0518 -6.4130 5.6688 14 6 3.5131 -7.0526 6.7807 15 6 3.2628 -8.4281 6.9542 16 6 3.7327 -9.0932 8.1066 17 1 3.2324 -9.9834 8.4581 18 6 4.8496 -8.5983 8.7952 19 7 5.6489 -7.7435 8.2146 20 14 5.1943 -9.1614 10.5426 21 1 5.3859 -10.6339 10.5596 22 1 6.4243 -8.4969 11.0433 23 1 4.0470 -8.8016 11.4142 24 6 2.5412 -9.1374 5.9738 25 6 2.0891 -8.4906 4.8624 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.1489 -2.4663 0.4316 36 1 2.0327 -4.8796 1.2423 37 1 0.5118 -4.4976 2.0845 38 1 2.5837 -4.6213 4.0001 39 1 3.2391 -5.3576 5.5372 40 1 4.0659 -6.5047 7.5295 41 1 6.4213 -7.4009 8.6912 42 1 2.3465 -10.1919 6.1027 43 1 1.5362 -9.0336 4.1101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647120722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:51 Heat of formation + Delta-G solvation = -96.624736 kcal Electronic energy + Delta-G solvation = -23453.695206 eV Core-core repulsion = 19882.697231 eV Total energy + Delta-G solvation = -3570.997975 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31139 -40.40079 -38.88341 -37.72254 -35.67025 -35.41805 -34.37704 -32.18615 -31.30967 -29.64281 -28.04786 -27.65456 -26.25431 -23.62878 -22.80560 -21.80274 -21.30635 -21.20328 -19.37353 -19.05977 -17.71290 -17.39501 -17.12828 -17.04295 -16.52779 -16.06184 -15.74639 -15.55212 -15.31139 -15.02831 -14.68858 -14.46244 -14.26768 -14.06355 -13.84632 -13.70336 -13.58924 -13.27578 -13.17751 -12.91890 -12.85028 -12.63350 -12.36469 -12.06525 -11.86939 -11.79106 -11.64962 -11.37925 -11.16401 -11.11882 -10.79559 -10.28542 -10.11544 -9.58321 -9.41415 -8.78814 -6.48942 0.42054 1.14811 1.38620 1.41536 1.44688 1.52512 1.81804 2.09867 2.17546 2.52684 2.77885 3.61034 3.68260 3.77968 3.94061 4.11673 4.18115 4.30348 4.32020 4.43202 4.46051 4.58082 4.66673 4.76736 4.83347 4.92735 4.99263 5.02477 5.03990 5.14902 5.22529 5.26901 5.28953 5.38592 5.40711 5.46857 5.58549 5.80967 5.93058 5.99297 6.21767 6.37771 6.53481 6.60349 6.76474 6.88031 7.06128 7.35330 8.16249 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.002392 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.584875 B =11703.208630 C =12680.833207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.146 4.146 4 C 0.121 3.879 5 N -0.708 5.708 6 C 0.513 3.487 7 O -0.575 6.575 8 C 0.102 3.898 9 N -0.724 5.724 10 C 0.578 3.422 11 O -0.596 6.596 12 C -0.294 4.294 13 C -0.057 4.057 14 C -0.198 4.198 15 C 0.101 3.899 16 C -0.471 4.471 17 H 0.089 0.911 18 C 0.035 3.965 19 N -0.801 5.801 20 Si 0.990 3.010 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.250 4.250 25 C -0.029 4.029 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.419 0.581 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.409 0.591 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.296 0.704 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 15.343 -12.662 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.204 4.204 4 C -0.003 4.003 5 N -0.361 5.361 6 C 0.299 3.701 7 O -0.455 6.455 8 C -0.025 4.025 9 N -0.379 5.379 10 C 0.371 3.629 11 O -0.481 6.481 12 C -0.299 4.299 13 C -0.076 4.076 14 C -0.217 4.217 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.107 0.893 18 C -0.184 4.184 19 N -0.424 5.424 20 Si 0.809 3.191 21 H -0.180 1.180 22 H -0.190 1.190 23 H -0.182 1.182 24 C -0.270 4.270 25 C -0.048 4.048 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.256 0.744 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.247 0.753 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.299 15.419 -12.598 20.604 hybrid contribution 0.387 -0.171 0.703 0.820 sum -4.912 15.248 -11.895 19.953 Atomic orbital electron populations 1.21898 0.94065 1.02366 1.02461 1.21325 0.96859 0.97031 0.96638 1.21776 1.01292 0.94567 1.02742 1.21553 0.99757 0.79600 0.99347 1.45771 1.57302 1.09774 1.23245 1.20623 0.78748 0.88333 0.82420 1.90710 1.41605 1.78216 1.34928 1.21149 1.02208 0.88809 0.90327 1.45589 1.58963 1.09203 1.24105 1.18274 0.77839 0.81100 0.85638 1.90611 1.44323 1.67180 1.45945 1.19131 1.16290 0.95470 0.98972 1.20710 0.95218 0.98091 0.93549 1.20992 1.06384 0.94816 0.99547 1.18157 0.88323 0.92170 0.91566 1.20106 1.10770 1.10769 1.08218 0.89322 1.26991 0.94146 0.93291 1.03998 1.69772 1.10465 1.23103 1.39080 0.85124 0.78744 0.79736 0.75450 1.18038 1.18962 1.18191 1.20881 1.10485 0.99077 0.96513 1.20527 0.95177 0.93111 0.96015 0.92170 0.93030 0.91201 0.89281 0.92424 0.90936 0.92599 0.92383 0.92282 0.74358 0.87319 0.87191 0.75278 0.86991 0.87139 0.89233 0.87327 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.07 71.98 0.65 -0.59 16 2 C -0.10 -0.91 2.96 -10.79 -0.03 -0.95 16 3 C -0.15 -1.24 9.19 71.98 0.66 -0.58 16 4 C 0.12 1.84 5.06 86.38 0.44 2.28 16 5 N -0.71 -11.26 5.28 -463.06 -2.45 -13.71 16 6 C 0.51 12.55 7.90 87.66 0.69 13.24 16 7 O -0.58 -19.05 15.67 -3.02 -0.05 -19.10 16 8 C 0.10 2.61 6.15 85.64 0.53 3.13 16 9 N -0.72 -25.37 5.48 -469.87 -2.57 -27.94 16 10 C 0.58 24.67 7.76 86.72 0.67 25.35 16 11 O -0.60 -27.31 16.32 -4.00 -0.07 -27.38 16 12 C -0.29 -13.88 5.89 -19.94 -0.12 -14.00 16 13 C -0.06 -2.67 9.47 22.25 0.21 -2.46 16 14 C -0.20 -10.28 8.63 22.47 0.19 -10.09 16 15 C 0.10 5.38 5.57 -21.28 -0.12 5.26 16 16 C -0.47 -24.18 9.05 23.46 0.21 -23.97 16 17 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 18 C 0.03 1.64 5.15 85.35 0.44 2.08 16 19 N -0.80 -39.63 10.95 21.87 0.24 -39.40 16 20 Si 0.99 35.57 29.59 68.60 2.03 37.60 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 22 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 23 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 24 C -0.25 -12.51 9.73 22.47 0.22 -12.29 16 25 C -0.03 -1.41 9.52 22.25 0.21 -1.19 16 26 H 0.06 0.45 7.18 -2.39 -0.02 0.44 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.42 3.98 7.65 -92.71 -0.71 3.27 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.41 14.66 5.44 -92.71 -0.50 14.16 16 39 H 0.11 4.69 6.37 -2.91 -0.02 4.67 16 40 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 41 H 0.30 13.13 8.29 -92.70 -0.77 12.36 16 42 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.11 5.03 7.63 -2.91 -0.02 5.01 16 Total: -1.00 -66.37 361.85 1.82 -64.55 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.18 Total: 40.15 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.86 Total: -14.77 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -4.78 Total: -81.05 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -0.11 Total: -46.47 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -66.37 1.82 -64.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647120722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds