Wall clock time and date at job start Tue Mar 31 2020 09:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.66171 * 2 1 4 4 O 1.43760 * 110.74372 * 123.41023 * 2 1 3 5 5 C 1.36135 * 109.28788 * 145.87778 * 4 2 1 6 6 C 1.39291 * 129.88135 * 161.46447 * 5 4 2 7 7 C 1.37928 * 120.24114 * 179.58190 * 6 5 4 8 8 C 1.38287 * 120.35522 * 0.02562 * 7 6 5 9 9 C 1.38347 * 119.76279 * 0.17726 * 8 7 6 10 10 C 1.37734 * 119.97917 * 359.97438 * 9 8 7 11 11 C 1.51643 * 132.17458 * 179.62513 * 10 9 8 12 12 H 1.08997 * 110.97775 * 313.89741 * 11 10 9 13 13 N 1.46507 * 110.94320 * 77.58063 * 11 10 9 14 14 C 1.34775 * 119.99847 * 267.51256 * 13 11 10 15 15 O 1.21587 * 119.99648 * 0.02562 * 14 13 11 16 16 N 1.34769 * 120.00187 * 179.97438 * 14 13 11 17 17 C 1.46500 * 120.00241 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46998 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.46626 * 179.97438 * 18 17 16 20 20 C 1.50706 * 109.46957 * 180.02562 * 19 18 17 21 21 H 1.07999 * 119.99816 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00340 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00296 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46692 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47025 * 119.99570 * 24 22 20 27 27 H 1.48492 * 109.46854 * 239.99727 * 24 22 20 28 28 H 1.08995 * 109.47252 * 183.21091 * 1 2 3 29 29 H 1.08999 * 109.47209 * 303.21775 * 1 2 3 30 30 H 1.09008 * 109.46977 * 63.21366 * 1 2 3 31 31 H 1.07998 * 119.88037 * 359.55346 * 6 5 4 32 32 H 1.07999 * 119.82386 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.11852 * 180.19824 * 8 7 6 34 34 H 1.08003 * 120.01140 * 179.97438 * 9 8 7 35 35 H 0.96996 * 120.00112 * 87.51857 * 13 11 10 36 36 H 0.97010 * 119.99849 * 0.02562 * 16 14 13 37 37 H 1.09000 * 109.47175 * 60.00333 * 17 16 14 38 38 H 1.09001 * 109.47297 * 299.99840 * 17 16 14 39 39 H 1.08993 * 109.46955 * 300.00226 * 18 17 16 40 40 H 1.09000 * 109.47050 * 60.00054 * 18 17 16 41 41 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 42 42 H 1.09000 * 109.47160 * 60.00369 * 19 18 17 43 43 H 0.97000 * 120.00540 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 8 2.0392 -0.7403 1.1222 5 6 3.1932 -1.3661 0.7619 6 6 4.2083 -1.8945 1.5560 7 6 5.3011 -2.5017 0.9736 8 6 5.3998 -2.5912 -0.4029 9 6 4.3980 -2.0651 -1.1988 10 6 3.3073 -1.4556 -0.6194 11 6 2.0784 -0.7921 -1.2104 12 1 2.3510 -0.1203 -2.0243 13 7 1.1095 -1.7933 -1.6635 14 6 1.1343 -2.2257 -2.9398 15 8 1.9610 -1.7852 -3.7149 16 7 0.2434 -3.1470 -3.3565 17 6 0.2707 -3.6175 -4.7437 18 6 -0.8369 -4.6521 -4.9532 19 6 -0.8088 -5.1429 -6.4020 20 6 -1.9001 -6.1616 -6.6086 21 1 -2.5490 -6.4315 -5.7886 22 6 -2.0700 -6.7489 -7.8444 23 7 -1.2801 -6.4198 -8.8430 24 14 -3.4231 -8.0110 -8.1006 25 1 -4.1675 -8.2033 -6.8301 26 1 -4.3546 -7.5312 -9.1529 27 1 -2.8225 -9.3019 -8.5222 28 1 -0.3633 -1.0260 0.0576 29 1 -0.3633 0.5630 0.8597 30 1 -0.3633 0.4632 -0.9175 31 1 4.1395 -1.8281 2.6318 32 1 6.0840 -2.9095 1.5958 33 1 6.2557 -3.0704 -0.8548 34 1 4.4711 -2.1324 -2.2743 35 1 0.4502 -2.1449 -1.0450 36 1 -0.4159 -3.4988 -2.7379 37 1 1.2384 -4.0730 -4.9539 38 1 0.1119 -2.7747 -5.4164 39 1 -0.6787 -5.4950 -4.2804 40 1 -1.8044 -4.1962 -4.7430 41 1 -0.9672 -4.2999 -7.0744 42 1 0.1587 -5.5987 -6.6125 43 1 -1.3998 -6.8327 -9.7126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288680708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:22 Heat of formation + Delta-G solvation = -65.215493 kcal Electronic energy + Delta-G solvation = -24081.374906 eV Core-core repulsion = 20511.738938 eV Total energy + Delta-G solvation = -3569.635968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.53663 -40.77840 -38.54098 -37.12310 -35.97579 -35.19935 -33.28218 -32.24691 -32.02131 -30.80553 -28.56734 -27.27281 -25.01249 -23.57303 -22.72060 -22.56278 -22.31228 -21.77691 -19.55387 -18.75717 -18.44915 -17.69211 -17.30803 -16.94826 -16.63060 -16.45583 -16.14308 -15.65691 -15.50912 -15.28874 -15.08336 -14.57675 -14.33678 -14.27499 -13.73581 -13.67713 -13.52876 -13.42468 -13.00727 -12.83159 -12.76675 -12.55100 -12.34365 -12.22611 -11.97554 -11.85315 -11.68163 -11.67418 -11.33579 -11.15389 -10.56154 -10.47200 -9.99600 -9.85672 -9.23192 -8.19644 -6.31020 0.21349 0.37281 1.41731 1.41890 1.54989 1.62823 2.07148 2.14062 2.41836 2.74054 3.14283 3.22454 3.31559 3.43473 3.80771 4.01401 4.13673 4.15708 4.19016 4.22971 4.24248 4.42991 4.50191 4.55759 4.60326 4.81122 4.84978 4.95525 4.98598 5.03495 5.16399 5.17787 5.32507 5.32938 5.43585 5.45346 5.52781 5.53710 5.62509 5.71143 5.84420 5.90763 6.17119 6.22654 6.86466 7.01982 7.38621 7.51357 8.92780 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.002443 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.044881 B =11458.405781 C =11995.223603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.120 0.880 4 O -0.306 6.306 5 C 0.100 3.900 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.157 4.157 9 C -0.071 4.071 10 C -0.208 4.208 11 C 0.175 3.825 12 H 0.101 0.899 13 N -0.718 5.718 14 C 0.702 3.298 15 O -0.632 6.632 16 N -0.729 5.729 17 C 0.151 3.849 18 C -0.100 4.100 19 C 0.024 3.976 20 C -0.539 4.539 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.258 1.258 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.411 0.589 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.069 0.931 41 H -0.007 1.007 42 H -0.009 1.009 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 12.758 25.356 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.221 6.221 5 C 0.055 3.945 6 C -0.166 4.166 7 C -0.092 4.092 8 C -0.175 4.175 9 C -0.090 4.090 10 C -0.210 4.210 11 C 0.069 3.931 12 H 0.119 0.881 13 N -0.375 5.375 14 C 0.402 3.598 15 O -0.513 6.513 16 N -0.384 5.384 17 C 0.026 3.974 18 C -0.138 4.138 19 C -0.014 4.014 20 C -0.577 4.577 21 H 0.085 0.915 22 C -0.202 4.202 23 N -0.576 5.576 24 Si 0.792 3.208 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.125 0.875 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.579 13.133 24.676 29.240 hybrid contribution -0.880 -0.971 -0.645 1.461 sum 7.699 12.161 24.030 28.011 Atomic orbital electron populations 1.21850 0.89905 1.03849 1.04629 1.23821 0.97656 0.95585 0.80952 0.86270 1.86851 1.34761 1.62439 1.38052 1.19754 0.87543 0.94676 0.92556 1.20608 0.92229 1.03072 1.00715 1.21286 0.97140 0.96040 0.94737 1.21370 0.99763 1.02040 0.94314 1.20542 0.92865 0.95582 0.99967 1.21193 0.98240 1.07073 0.94511 1.20876 0.85449 0.89182 0.97617 0.88091 1.44989 1.37228 1.45747 1.09568 1.16107 0.81415 0.79728 0.82579 1.90888 1.42104 1.62705 1.55611 1.45036 1.36214 1.43890 1.13310 1.21081 0.98942 0.96598 0.80748 1.21586 0.97152 0.96977 0.98093 1.18941 0.95570 0.94901 0.91990 1.21707 1.16219 1.23339 0.96464 0.91548 1.26026 0.98899 0.99304 0.95925 1.70117 1.40286 1.44762 1.02428 0.85364 0.78664 0.78241 0.78560 1.18192 1.20541 1.20618 0.91347 0.89411 0.89224 0.83470 0.81928 0.83824 0.87457 0.75135 0.75288 0.93670 0.93243 0.91554 0.91233 0.98840 0.99012 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.99 71.98 0.65 -0.88 16 2 C 0.08 1.13 4.21 31.17 0.13 1.27 16 3 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 4 O -0.31 -5.77 10.81 -95.09 -1.03 -6.79 16 5 C 0.10 2.07 7.04 22.68 0.16 2.23 16 6 C -0.15 -2.50 10.06 22.45 0.23 -2.27 16 7 C -0.07 -1.12 10.02 22.21 0.22 -0.90 16 8 C -0.16 -2.94 10.07 22.31 0.22 -2.71 16 9 C -0.07 -1.72 10.03 22.18 0.22 -1.50 16 10 C -0.21 -4.83 5.93 -19.53 -0.12 -4.95 16 11 C 0.17 3.70 3.34 45.12 0.15 3.85 16 12 H 0.10 2.44 7.54 -2.39 -0.02 2.42 16 13 N -0.72 -15.60 4.55 -457.17 -2.08 -17.68 16 14 C 0.70 21.12 8.57 179.06 1.53 22.65 16 15 O -0.63 -24.69 15.98 -3.99 -0.06 -24.75 16 16 N -0.73 -20.54 5.56 -478.53 -2.66 -23.20 16 17 C 0.15 5.41 5.67 86.38 0.49 5.90 16 18 C -0.10 -3.86 5.27 30.60 0.16 -3.70 16 19 C 0.02 1.24 4.97 29.85 0.15 1.38 16 20 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 21 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 22 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 23 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 24 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 28 H 0.07 0.70 6.36 -2.39 -0.02 0.69 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.41 6.73 6.70 -92.71 -0.62 6.10 16 36 H 0.41 8.74 8.49 -92.70 -0.79 7.96 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -73.95 360.44 0.99 -72.95 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.38 Total: 19.91 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.90 Total: -9.26 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.46 Total: -97.90 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.09 Total: -31.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.95 0.99 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288680708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.735 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds