Wall clock time and date at job start Tue Mar 31 2020 09:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.87535 * 2 1 4 4 C 1.54325 * 110.01227 * 121.09151 * 2 1 3 5 5 C 1.55443 * 102.96719 * 141.68386 * 4 2 1 6 6 H 1.09002 * 111.01284 * 82.52993 * 5 4 2 7 7 N 1.46504 * 111.12025 * 206.46910 * 5 4 2 8 8 C 1.36942 * 120.00400 * 198.56029 * 7 5 4 9 9 H 1.07999 * 119.99709 * 359.97438 * 8 7 5 10 10 C 1.38804 * 119.99899 * 179.97438 * 8 7 5 11 11 N 1.31622 * 119.99846 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 120.00455 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46629 * 89.99912 * 12 10 8 14 14 H 1.48491 * 109.47101 * 210.00332 * 12 10 8 15 15 H 1.48496 * 109.46668 * 330.00255 * 12 10 8 16 16 C 1.54913 * 101.45281 * 324.51896 * 5 4 2 17 17 N 1.47020 * 109.88639 * 238.97999 * 2 1 3 18 18 C 1.34780 * 125.64349 * 61.50569 * 17 2 1 19 19 O 1.21609 * 120.00140 * 357.92248 * 18 17 2 20 20 C 1.47385 * 119.99427 * 177.91963 * 18 17 2 21 21 C 1.47016 * 127.19392 * 7.67466 * 20 18 17 22 22 C 1.34180 * 105.95242 * 180.02562 * 21 20 18 23 23 O 1.34215 * 109.12587 * 359.97438 * 22 21 20 24 24 C 1.33661 * 110.90879 * 359.72711 * 23 22 21 25 25 C 1.50691 * 125.80373 * 180.28357 * 24 23 22 26 26 C 1.53004 * 117.50110 * 8.81658 * 25 24 23 27 27 C 1.53001 * 117.50453 * 300.19079 * 25 24 23 28 28 H 1.08999 * 109.46775 * 179.56479 * 1 2 3 29 29 H 1.09000 * 109.47288 * 299.56000 * 1 2 3 30 30 H 1.08999 * 109.47616 * 59.56614 * 1 2 3 31 31 H 1.09000 * 110.72642 * 260.04805 * 4 2 1 32 32 H 1.09005 * 110.71710 * 23.14571 * 4 2 1 33 33 H 0.97002 * 119.99984 * 18.55158 * 7 5 4 34 34 H 0.96995 * 120.00156 * 180.02562 * 11 10 8 35 35 H 1.08995 * 110.36634 * 278.10671 * 16 5 4 36 36 H 1.09004 * 110.36394 * 155.89591 * 16 5 4 37 37 H 1.07996 * 127.02275 * 0.02562 * 21 20 18 38 38 H 1.07997 * 125.43720 * 180.02562 * 22 21 20 39 39 H 1.09001 * 115.55189 * 154.52119 * 25 24 23 40 40 H 1.08998 * 117.49634 * 359.97438 * 26 25 24 41 41 H 1.08995 * 117.50230 * 145.02093 * 26 25 24 42 42 H 1.08993 * 117.50348 * 214.98105 * 27 25 24 43 43 H 1.09001 * 117.49360 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7488 1.2418 5 6 3.2942 -1.5123 0.6891 6 1 4.1705 -0.8649 0.6556 7 7 3.5648 -2.7184 1.4756 8 6 4.7945 -3.3172 1.4098 9 1 5.5649 -2.9006 0.7778 10 6 5.0509 -4.4596 2.1554 11 7 6.2331 -5.0349 2.0926 12 14 3.7187 -5.1798 3.2492 13 1 2.9215 -6.1647 2.4748 14 1 4.3457 -5.8558 4.4131 15 1 2.8299 -4.0911 3.7287 16 6 2.8176 -1.8762 -0.7392 17 7 2.0301 -0.7125 -1.1848 18 6 1.8059 -0.3597 -2.4662 19 8 1.1071 0.6030 -2.7185 20 6 2.4077 -1.1409 -3.5615 21 6 3.1410 -2.4102 -3.4493 22 6 3.4984 -2.7414 -4.6994 23 8 3.0538 -1.8011 -5.5477 24 6 2.3952 -0.8403 -4.8921 25 6 1.7524 0.3713 -5.5163 26 6 1.6756 0.4225 -7.0435 27 6 2.6565 1.3281 -6.2961 28 1 -0.3633 -1.0276 -0.0078 29 1 -0.3634 0.5070 0.8939 30 1 -0.3634 0.5205 -0.8860 31 1 2.3557 -0.0450 2.0191 32 1 1.3092 -1.4448 1.6198 33 1 2.8728 -3.0927 2.0431 34 1 6.4122 -5.8334 2.6133 35 1 2.1938 -2.7697 -0.7148 36 1 3.6732 -2.0296 -1.3970 37 1 3.3494 -2.9630 -2.5452 38 1 4.0543 -3.6242 -4.9787 39 1 0.9247 0.8057 -4.9556 40 1 2.0904 -0.4200 -7.5968 41 1 0.7972 0.8905 -7.4879 42 1 2.4234 2.3918 -6.2487 43 1 3.7164 1.0814 -6.3572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989358607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:41 Heat of formation + Delta-G solvation = 34.182267 kcal Electronic energy + Delta-G solvation = -25202.720850 eV Core-core repulsion = 21637.395092 eV Total energy + Delta-G solvation = -3565.325758 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59469 -39.81287 -37.54857 -37.06759 -34.35286 -33.27491 -31.60808 -31.13612 -29.71274 -28.92751 -25.70230 -24.51380 -23.45930 -22.80890 -22.57800 -21.46121 -20.62013 -19.96510 -18.67212 -17.73897 -17.19509 -16.56571 -16.11861 -16.03386 -15.49301 -15.19068 -14.49179 -14.38907 -14.07132 -13.83765 -13.44824 -13.20195 -12.86633 -12.64462 -12.45535 -12.41716 -12.26490 -12.21131 -11.78910 -11.75754 -11.40000 -11.13209 -11.08604 -10.74328 -10.67544 -10.64303 -10.41946 -10.09922 -9.72190 -9.70775 -9.68001 -9.07187 -8.58673 -8.27014 -7.43224 -5.88698 -3.26948 1.33725 2.13504 2.72718 3.20387 3.29977 3.32727 3.38975 3.42274 3.74379 4.25538 4.48424 4.59486 4.61701 4.75441 4.84805 4.98200 5.06253 5.14237 5.15689 5.35424 5.40015 5.46094 5.48913 5.52435 5.60291 5.65933 5.71340 5.73864 5.86915 5.91860 5.96864 5.98523 6.01187 6.08347 6.24396 6.30443 6.36219 6.40785 6.63417 6.70732 7.05158 7.77680 7.85881 8.29877 8.39314 9.06635 9.78840 9.97119 11.28827 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004025 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.415207 B = 6955.038552 C = 8116.764477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.176 3.824 6 H 0.073 0.927 7 N -0.736 5.736 8 C -0.254 4.254 9 H 0.092 0.908 10 C 0.011 3.989 11 N -0.929 5.929 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.064 3.936 17 N -0.601 5.601 18 C 0.605 3.395 19 O -0.553 6.553 20 C -0.228 4.228 21 C -0.192 4.192 22 C -0.043 4.043 23 O -0.178 6.178 24 C 0.097 3.903 25 C -0.084 4.084 26 C -0.172 4.172 27 C -0.162 4.162 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.176 0.824 38 H 0.210 0.790 39 H 0.152 0.848 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 9.457 -13.486 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.179 4.179 5 C 0.065 3.935 6 H 0.091 0.909 7 N -0.378 5.378 8 C -0.383 4.383 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.061 4.061 17 N -0.334 5.334 18 C 0.396 3.604 19 O -0.434 6.434 20 C -0.232 4.232 21 C -0.210 4.210 22 C -0.108 4.108 23 O -0.074 6.074 24 C 0.044 3.956 25 C -0.102 4.102 26 C -0.209 4.209 27 C -0.199 4.199 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.198 0.802 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.193 0.807 38 H 0.226 0.774 39 H 0.170 0.830 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.665 9.880 -13.999 19.672 hybrid contribution -0.698 -1.037 1.128 1.684 sum -10.363 8.843 -12.871 18.742 Atomic orbital electron populations 1.22136 0.95061 1.02156 1.02534 1.21489 0.94290 0.96155 0.84341 0.90795 1.23086 0.98839 0.99785 0.96142 1.21331 0.94919 0.88702 0.88565 0.90910 1.42654 1.13843 1.29275 1.52040 1.19061 0.89219 1.06578 1.23473 0.88978 1.24674 0.96392 0.97877 0.99653 1.69696 1.20849 1.22267 1.44710 0.86582 0.81927 0.79224 0.80988 1.20961 1.21622 1.20195 1.23792 0.95075 0.87701 0.99535 1.48316 1.51813 1.28998 1.04270 1.16797 0.79829 0.83022 0.80787 1.90680 1.40126 1.29111 1.83467 1.21034 1.09593 0.99396 0.93157 1.23645 1.01476 0.96607 0.99300 1.23955 1.04069 0.94536 0.88258 1.83685 1.56287 1.28642 1.38776 1.21581 0.94653 0.89909 0.89421 1.20803 1.02558 0.92636 0.94200 1.23054 1.02161 1.02816 0.92856 1.23051 0.97270 0.97143 1.02391 0.92671 0.91946 0.91308 0.90049 0.90593 0.80212 0.92877 0.91296 0.89604 0.80715 0.77396 0.83039 0.88159 0.87845 0.87647 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.11 37.16 0.34 -1.79 16 2 C 0.14 2.03 3.47 -66.95 -0.23 1.79 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.14 -2.04 6.12 -24.74 -0.15 -2.19 16 5 C 0.18 3.14 3.70 -65.62 -0.24 2.89 16 6 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 7 N -0.74 -15.98 5.08 -51.20 -0.26 -16.24 16 8 C -0.25 -6.65 10.47 -15.06 -0.16 -6.81 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 12 Si 0.88 20.94 27.74 -169.99 -4.71 16.23 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 16 C 0.06 1.06 5.05 -2.53 -0.01 1.05 16 17 N -0.60 -9.58 3.07 -164.29 -0.50 -10.08 16 18 C 0.60 10.17 7.64 -12.54 -0.10 10.07 16 19 O -0.55 -9.93 13.87 5.27 0.07 -9.86 16 20 C -0.23 -3.54 6.22 -103.27 -0.64 -4.18 16 21 C -0.19 -2.71 9.30 -37.46 -0.35 -3.06 16 22 C -0.04 -0.52 12.03 29.30 0.35 -0.16 16 23 O -0.18 -2.32 10.23 7.63 0.08 -2.24 16 24 C 0.10 1.37 6.85 -34.97 -0.24 1.13 16 25 C -0.08 -1.01 5.68 -91.77 -0.52 -1.53 16 26 C -0.17 -1.57 10.17 -26.73 -0.27 -1.84 16 27 C -0.16 -1.57 10.23 -26.73 -0.27 -1.84 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.00 6.81 -51.93 -0.35 0.65 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 33 H 0.36 7.79 5.59 -40.82 -0.23 7.57 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.09 1.44 5.13 -51.93 -0.27 1.17 16 37 H 0.18 2.51 5.14 -52.49 -0.27 2.24 16 38 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.15 1.98 6.58 -51.93 -0.34 1.64 16 40 H 0.10 0.91 7.96 -51.93 -0.41 0.49 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.04 348.80 -7.98 -39.02 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -6.09 Total: 11.23 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.59 Total: -6.27 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.01 Total: -53.37 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.15 Total: -12.10 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.04 -7.98 -39.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989358607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.205 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds