Wall clock time and date at job start Tue Mar 31 2020 09:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46745 * 2 1 4 4 C 1.50698 * 109.47013 * 119.99581 * 2 1 3 5 5 O 1.21289 * 119.99745 * 94.80537 * 4 2 1 6 6 N 1.34782 * 120.00170 * 274.80604 * 4 2 1 7 7 C 1.39935 * 120.00033 * 184.84757 * 6 4 2 8 8 C 1.39291 * 119.94597 * 144.45236 * 7 6 4 9 9 C 1.38487 * 120.42391 * 179.97438 * 8 7 6 10 10 C 1.37676 * 120.32586 * 359.97438 * 9 8 7 11 11 C 1.40745 * 119.88739 * 0.02562 * 10 9 8 12 12 C 1.41405 * 120.21199 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99877 * 207.87287 * 12 11 10 14 14 C 1.39934 * 120.00024 * 27.87932 * 12 11 10 15 15 N 1.30836 * 119.99726 * 13.77943 * 14 12 11 16 16 Si 1.86794 * 120.00231 * 193.77861 * 14 12 11 17 17 H 1.48502 * 109.47244 * 94.97716 * 16 14 12 18 18 H 1.48497 * 109.47451 * 214.97702 * 16 14 12 19 19 H 1.48503 * 109.46808 * 334.98112 * 16 14 12 20 20 C 1.38238 * 119.94521 * 324.18500 * 7 6 4 21 21 N 1.46893 * 109.47240 * 239.99749 * 2 1 3 22 22 C 1.47016 * 111.00005 * 177.46901 * 21 2 1 23 23 C 1.53099 * 109.26109 * 177.60787 * 22 21 2 24 24 O 1.43013 * 109.29107 * 56.82878 * 23 22 21 25 25 C 1.43019 * 113.73865 * 301.40302 * 24 23 22 26 26 C 1.47018 * 111.00000 * 53.84251 * 21 2 1 27 27 H 1.09009 * 109.46874 * 60.00159 * 1 2 3 28 28 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47361 * 300.00345 * 1 2 3 30 30 H 0.97001 * 119.99473 * 4.84522 * 6 4 2 31 31 H 1.07997 * 119.78483 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.83260 * 180.02562 * 9 8 7 33 33 H 1.08006 * 120.05722 * 179.97438 * 10 9 8 34 34 H 0.96998 * 119.99538 * 180.02562 * 15 14 12 35 35 H 1.08005 * 120.16293 * 359.97438 * 20 7 6 36 36 H 1.09001 * 109.49912 * 57.67748 * 22 21 2 37 37 H 1.08998 * 109.54579 * 297.57101 * 22 21 2 38 38 H 1.08999 * 109.50868 * 176.78677 * 23 22 21 39 39 H 1.09000 * 109.50353 * 296.87673 * 23 22 21 40 40 H 1.09004 * 109.46940 * 298.66213 * 25 24 23 41 41 H 1.09000 * 109.53956 * 178.58412 * 25 24 23 42 42 H 1.09001 * 109.50618 * 302.32203 * 26 21 2 43 43 H 1.08992 * 109.51121 * 62.45707 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.3174 -1.8880 1.1769 6 7 2.1648 -0.0369 2.3905 7 6 2.7260 -0.6685 3.5060 8 6 3.5263 0.0563 4.3860 9 6 4.0862 -0.5586 5.4933 10 6 3.8572 -1.8942 5.7368 11 6 3.0507 -2.6394 4.8564 12 6 2.8114 -4.0116 5.0996 13 1 2.6064 -4.6784 4.2752 14 6 2.8400 -4.5056 6.4086 15 7 2.8174 -3.6772 7.4210 16 14 2.9104 -6.3477 6.7104 17 1 4.3231 -6.7648 6.8992 18 1 2.1292 -6.6799 7.9288 19 1 2.3349 -7.0628 5.5430 20 6 2.4807 -2.0094 3.7359 21 7 2.0197 -0.6925 -1.1993 22 6 3.4881 -0.6598 -1.2640 23 6 3.9570 -1.4419 -2.4938 24 8 3.3511 -0.8883 -3.6650 25 6 1.9213 -0.9037 -3.6356 26 6 1.4318 -0.1162 -2.4174 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8710 0.8855 2.4520 31 1 3.7113 1.1046 4.2035 32 1 4.7050 0.0126 6.1696 33 1 4.2964 -2.3695 6.6015 34 1 2.8377 -4.0196 8.3283 35 1 1.8564 -2.5711 3.0567 36 1 3.9021 -1.1145 -0.3639 37 1 3.8269 0.3734 -1.3387 38 1 5.0415 -1.3725 -2.5776 39 1 3.6658 -2.4874 -2.3930 40 1 1.5703 -1.9335 -3.5684 41 1 1.5330 -0.4456 -4.5453 42 1 0.3449 -0.1739 -2.3595 43 1 1.7371 0.9259 -2.5111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456734310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:20 Heat of formation + Delta-G solvation = -46.219050 kcal Electronic energy + Delta-G solvation = -24979.169547 eV Core-core repulsion = 21410.357326 eV Total energy + Delta-G solvation = -3568.812220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37815 -39.12853 -37.29823 -35.86674 -34.40889 -33.04845 -31.65146 -31.12811 -29.80445 -28.12650 -26.82378 -25.28878 -24.60325 -23.23550 -21.38792 -20.85742 -20.38403 -19.42644 -17.79079 -16.94144 -16.82937 -16.17521 -15.57242 -15.34311 -15.16536 -15.07125 -14.63504 -14.43853 -14.23542 -14.21728 -13.60409 -13.14063 -12.92306 -12.60906 -12.41750 -12.12496 -12.06257 -11.77173 -11.64834 -11.50274 -11.36109 -11.13127 -11.10382 -10.89082 -10.65510 -10.44259 -10.15269 -9.84812 -9.62315 -9.33688 -9.06415 -8.87932 -8.46538 -7.42431 -6.93331 -6.67655 -4.33156 2.60005 2.84842 3.11026 3.13647 3.16528 3.21692 3.43991 3.70976 3.83265 3.99156 4.65864 4.70749 4.72351 4.83298 4.93389 5.01035 5.02022 5.13946 5.19232 5.35567 5.43608 5.53277 5.58028 5.65269 5.72290 5.80625 5.83721 6.01721 6.23986 6.38403 6.68373 6.76457 6.78626 7.00111 7.03831 7.06016 7.10399 7.27374 7.58011 7.74025 7.96571 8.12333 8.17797 8.27759 8.65433 8.74648 8.96096 8.99515 10.26019 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.003424 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.432144 B = 8175.574981 C = 8775.779494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.059 0.941 4 C 0.507 3.493 5 O -0.495 6.495 6 N -0.669 5.669 7 C 0.147 3.853 8 C -0.259 4.259 9 C -0.094 4.094 10 C -0.168 4.168 11 C 0.119 3.881 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.075 3.925 15 N -0.800 5.800 16 Si 0.909 3.091 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.206 4.206 21 N -0.513 5.513 22 C 0.015 3.985 23 C 0.067 3.933 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.015 3.985 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.279 0.721 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 8.487 -14.700 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 H 0.076 0.924 4 C 0.292 3.708 5 O -0.368 6.368 6 N -0.314 5.314 7 C 0.055 3.945 8 C -0.281 4.281 9 C -0.113 4.113 10 C -0.188 4.188 11 C 0.116 3.884 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.426 5.426 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.227 4.227 21 N -0.239 5.239 22 C -0.112 4.112 23 C -0.010 4.010 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.113 4.113 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.762 7.197 -14.654 16.558 hybrid contribution -0.063 0.604 0.628 0.874 sum -2.826 7.801 -14.026 16.296 Atomic orbital electron populations 1.21852 0.91838 1.03982 1.02518 1.21589 0.97368 0.95675 0.89757 0.92369 1.20305 0.78811 0.87873 0.83819 1.90750 1.46874 1.14848 1.84292 1.43457 1.61844 1.15714 1.10371 1.17453 0.96839 0.93204 0.86958 1.20053 1.08969 0.98273 1.00778 1.20462 0.99450 0.95357 0.96052 1.21349 1.01855 0.93271 1.02299 1.17526 0.88055 0.93160 0.89665 1.19596 1.42563 0.93869 0.92888 0.90361 1.25885 0.92296 1.00203 0.95816 1.69818 1.36313 1.36603 0.99910 0.86277 0.79101 0.82558 0.78655 1.19402 1.20337 1.18554 1.21163 1.06489 0.92890 1.02189 1.61919 1.06997 1.54429 1.00539 1.22863 0.87701 0.99664 1.01020 1.22647 0.97813 0.97207 0.83319 1.87954 1.19302 1.83253 1.40241 1.22645 0.81259 1.00282 0.97064 1.22895 1.00942 0.97063 0.90397 0.91401 0.90653 0.91296 0.77020 0.89396 0.89072 0.86400 0.91039 0.87048 0.88529 0.94270 0.88368 0.91771 0.92079 0.88541 0.89007 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.74 37.16 0.32 -1.18 16 2 C 0.07 0.87 2.47 -68.87 -0.17 0.70 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.51 8.87 5.91 -10.98 -0.06 8.81 16 5 O -0.50 -10.91 13.06 5.55 0.07 -10.84 16 6 N -0.67 -11.75 5.33 -9.91 -0.05 -11.80 16 7 C 0.15 3.31 6.28 -83.77 -0.53 2.78 16 8 C -0.26 -5.68 9.97 -39.10 -0.39 -6.07 16 9 C -0.09 -2.20 10.01 -39.69 -0.40 -2.60 16 10 C -0.17 -4.42 8.66 -38.84 -0.34 -4.76 16 11 C 0.12 3.28 5.55 -106.85 -0.59 2.69 16 12 C -0.46 -12.70 9.06 -37.74 -0.34 -13.05 16 13 H 0.08 2.14 7.88 -52.49 -0.41 1.73 16 14 C 0.07 1.92 5.20 -17.34 -0.09 1.83 16 15 N -0.80 -21.03 10.95 55.55 0.61 -20.42 16 16 Si 0.91 19.31 29.58 -169.99 -5.03 14.28 16 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.21 -5.34 8.43 -38.68 -0.33 -5.67 16 21 N -0.51 -6.69 4.29 -227.72 -0.98 -7.66 16 22 C 0.02 0.21 5.34 -3.71 -0.02 0.19 16 23 C 0.07 0.80 7.01 37.21 0.26 1.07 16 24 O -0.39 -4.72 10.83 -35.23 -0.38 -5.11 16 25 C 0.06 0.63 7.01 37.21 0.26 0.89 16 26 C 0.01 0.15 5.18 -3.71 -0.02 0.13 16 27 H 0.07 0.54 6.28 -51.92 -0.33 0.21 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.40 5.40 8.82 -40.82 -0.36 5.04 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.12 3.19 6.26 -52.48 -0.33 2.86 16 34 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 35 H 0.11 3.00 6.26 -52.48 -0.33 2.67 16 36 H 0.10 1.54 6.45 -51.93 -0.34 1.21 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.76 6.08 -51.93 -0.32 0.44 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -31.50 345.88 -9.17 -40.67 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.19 Total: 9.91 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.43 Total: -14.24 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.42 Total: -39.89 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.31 Total: -15.95 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.50 -9.17 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456734310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.552 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds