Wall clock time and date at job start Tue Mar 31 2020 08:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35899 * 117.00118 * 2 1 4 4 C 1.38725 * 120.05399 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94234 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05902 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.94840 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47513 * 89.99592 * 7 6 5 9 9 O 1.21281 * 119.99857 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00116 * 180.02562 * 8 7 6 11 11 C 1.47029 * 125.65105 * 0.02562 * 10 8 7 12 12 C 1.54321 * 107.27321 * 178.90128 * 11 10 8 13 13 C 1.55154 * 102.94503 * 337.81221 * 12 11 10 14 14 H 1.09004 * 111.00093 * 277.38900 * 13 12 11 15 15 N 1.46490 * 111.00845 * 153.57426 * 13 12 11 16 16 C 1.36935 * 120.00121 * 89.57477 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.47464 * 125.63135 * 179.97438 * 10 8 7 25 25 C 1.38268 * 120.10567 * 0.29241 * 6 5 4 26 26 C 1.38138 * 120.05961 * 359.45571 * 25 6 5 27 27 H 1.08994 * 109.46873 * 59.99873 * 1 2 3 28 28 H 1.08991 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46814 * 300.00597 * 1 2 3 30 30 H 1.07995 * 120.03171 * 0.03701 * 4 3 2 31 31 H 1.08008 * 119.97209 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46984 * 329.99256 * 7 6 5 33 33 H 1.09004 * 109.47215 * 209.99792 * 7 6 5 34 34 H 1.09002 * 109.87782 * 59.48661 * 11 10 8 35 35 H 1.09000 * 110.00935 * 298.39862 * 11 10 8 36 36 H 1.08992 * 110.72035 * 219.44172 * 12 11 10 37 37 H 1.09002 * 110.71737 * 96.17065 * 12 11 10 38 38 H 0.97000 * 120.00577 * 269.58076 * 15 13 12 39 39 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 40 40 H 1.09008 * 110.35195 * 85.32025 * 24 10 8 41 41 H 1.09002 * 110.40630 * 322.98931 * 24 10 8 42 42 H 1.08001 * 119.96744 * 179.70648 * 25 6 5 43 43 H 1.08002 * 120.03654 * 180.24783 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3021 3.6758 0.0005 7 6 3.9862 5.0185 0.0005 8 6 4.2138 5.4664 -1.4202 9 8 3.8562 4.7641 -2.3421 10 7 4.8158 6.6468 -1.6664 11 6 5.2987 7.5912 -0.6484 12 6 5.9371 8.7820 -1.3941 13 6 6.2845 8.1780 -2.7804 14 1 7.2318 7.6399 -2.7458 15 7 6.3109 9.2159 -3.8138 16 6 7.4742 9.8873 -4.0803 17 1 8.3723 9.6514 -3.5290 18 6 7.4991 10.8713 -5.0592 19 7 6.4043 11.1592 -5.7308 20 14 9.0862 11.7867 -5.4232 21 1 8.8488 12.7795 -6.5018 22 1 9.5452 12.4883 -4.1975 23 1 10.1261 10.8205 -5.8593 24 6 5.0999 7.2042 -3.0018 25 6 1.9212 3.6047 0.0066 26 6 1.2916 2.3752 0.0009 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 4.0209 0.3799 -0.0016 31 1 5.1347 2.5749 0.0000 32 1 4.9443 4.9380 0.5141 33 1 3.3584 5.7462 0.5148 34 1 6.0436 7.1068 -0.0171 35 1 4.4657 7.9396 -0.0378 36 1 6.8390 9.1183 -0.8829 37 1 5.2236 9.5995 -1.4975 38 1 5.5043 9.4278 -4.3092 39 1 5.5803 10.6836 -5.5420 40 1 4.2312 7.7430 -3.3804 41 1 5.3854 6.4104 -3.6921 42 1 1.3344 4.5114 0.0118 43 1 0.2130 2.3201 0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019699708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:26 Heat of formation + Delta-G solvation = -31.028199 kcal Electronic energy + Delta-G solvation = -23856.529377 eV Core-core repulsion = 20288.375881 eV Total energy + Delta-G solvation = -3568.153496 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49181 -39.75560 -37.98279 -37.05724 -34.44210 -32.53304 -31.47569 -31.23213 -29.51645 -28.59823 -27.64538 -26.29120 -23.54786 -22.95873 -22.82308 -21.52005 -20.28565 -19.09655 -18.36936 -17.53470 -17.04354 -16.59180 -16.05623 -15.99073 -15.68277 -15.00972 -14.68439 -14.56649 -14.25083 -13.88885 -13.70262 -13.58110 -13.32806 -12.93663 -12.75392 -12.50453 -12.33869 -12.24410 -11.93397 -11.73272 -11.69458 -11.25687 -11.08379 -11.00216 -10.74382 -10.68244 -10.30068 -10.02504 -9.75691 -9.26010 -9.15766 -8.99523 -8.47543 -8.28137 -7.15156 -6.17611 -3.19696 1.18250 1.21712 2.73408 3.00741 3.08345 3.48493 3.51740 3.63052 3.69425 4.52480 4.55525 4.61178 4.66295 4.71471 4.77603 4.82701 4.95242 5.00868 5.12314 5.16070 5.24005 5.25080 5.32658 5.40637 5.46482 5.51650 5.56592 5.67854 5.84081 5.87715 5.95406 6.05507 6.14035 6.15118 6.26859 6.43599 6.46005 6.51708 6.56280 6.79392 7.15504 7.67344 7.72877 8.28249 8.67483 9.11771 9.98357 10.11742 11.30200 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.041016 B = 0.002246 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.495368 B =12461.612887 C =12601.864117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.150 4.150 5 C -0.065 4.065 6 C -0.099 4.099 7 C -0.093 4.093 8 C 0.525 3.475 9 O -0.537 6.537 10 N -0.615 5.615 11 C 0.101 3.899 12 C -0.155 4.155 13 C 0.177 3.823 14 H 0.066 0.934 15 N -0.726 5.726 16 C -0.336 4.336 17 H 0.067 0.933 18 C -0.042 4.042 19 N -0.940 5.940 20 Si 1.081 2.919 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.098 3.902 25 C -0.065 4.065 26 C -0.206 4.206 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 -17.470 17.238 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.083 4.083 6 C -0.100 4.100 7 C -0.133 4.133 8 C 0.313 3.687 9 O -0.414 6.414 10 N -0.350 5.350 11 C -0.022 4.022 12 C -0.196 4.196 13 C 0.065 3.935 14 H 0.084 0.916 15 N -0.368 5.368 16 C -0.467 4.467 17 H 0.085 0.915 18 C -0.240 4.240 19 N -0.585 5.585 20 Si 0.912 3.088 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.025 4.025 25 C -0.083 4.083 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.847 -16.951 15.884 24.857 hybrid contribution -1.228 -0.873 0.917 1.764 sum -10.075 -17.823 16.801 26.485 Atomic orbital electron populations 1.23044 0.78482 1.03830 1.01402 1.86057 1.21337 1.27099 1.88854 1.19022 0.92394 0.84048 0.96746 1.20359 0.91341 0.98538 1.06601 1.20802 0.99759 0.90978 0.96756 1.19212 0.93478 0.93803 1.03487 1.20579 1.02590 0.95305 0.94795 1.20190 0.77524 0.79719 0.91232 1.90724 1.50752 1.53465 1.46427 1.48493 1.58797 1.18854 1.08856 1.22102 0.98133 0.90785 0.91223 1.23395 1.00803 0.96267 0.99133 1.21236 0.95108 0.88945 0.88211 0.91618 1.42269 1.10899 1.41761 1.41828 1.20012 0.89210 1.17503 1.19950 0.91537 1.25832 1.04675 0.98167 0.95357 1.70891 1.00495 1.44076 1.42995 0.83229 0.73571 0.76009 0.76037 1.20992 1.22180 1.22163 1.22557 0.98784 0.97263 0.83927 1.20759 0.93799 0.97097 0.96651 1.21153 0.99887 0.92271 1.09167 0.92594 0.88317 0.92704 0.85217 0.85412 0.88065 0.88203 0.91760 0.91958 0.90602 0.90753 0.79695 0.93306 0.91691 0.90599 0.85933 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.42 -0.20 -3.56 16 3 C 0.12 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.15 -1.68 9.99 -39.43 -0.39 -2.08 16 5 C -0.06 -0.73 9.69 -39.60 -0.38 -1.11 16 6 C -0.10 -1.15 4.37 -104.60 -0.46 -1.61 16 7 C -0.09 -0.98 5.02 -29.04 -0.15 -1.12 16 8 C 0.53 7.88 7.84 -10.99 -0.09 7.79 16 9 O -0.54 -10.24 16.29 5.56 0.09 -10.15 16 10 N -0.62 -9.23 3.33 -170.46 -0.57 -9.80 16 11 C 0.10 1.25 6.49 -3.06 -0.02 1.23 16 12 C -0.15 -2.45 6.65 -24.90 -0.17 -2.62 16 13 C 0.18 3.40 3.70 -65.77 -0.24 3.16 16 14 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 15 N -0.73 -17.59 5.26 -51.34 -0.27 -17.86 16 16 C -0.34 -9.15 9.97 -15.06 -0.15 -9.30 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 19 N -0.94 -28.60 13.70 55.49 0.76 -27.84 16 20 Si 1.08 25.36 29.92 -169.99 -5.09 20.27 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.10 1.74 6.54 -2.49 -0.02 1.72 16 25 C -0.06 -0.72 9.69 -39.61 -0.38 -1.10 16 26 C -0.21 -2.18 9.04 -39.43 -0.36 -2.54 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.37 9.28 6.57 -40.82 -0.27 9.01 16 39 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 40 H 0.06 1.19 8.00 -51.92 -0.42 0.77 16 41 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.04 6.30 -52.49 -0.33 0.71 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -34.23 359.29 -8.38 -42.61 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.35 Total: 7.47 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -2.17 Total: -6.56 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.08 Total: -55.50 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.11 Total: -13.71 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.27 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.23 -8.38 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019699708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.585 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds