Wall clock time and date at job start Tue Mar 31 2020 08:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99863 * 2 1 4 4 N 1.46497 * 109.47071 * 124.99774 * 3 2 1 5 5 C 1.46497 * 120.00037 * 269.99754 * 4 3 2 6 6 C 1.50706 * 109.47608 * 270.00084 * 5 4 3 7 7 H 1.08000 * 119.99416 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00072 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99212 * 180.02562 * 8 6 5 10 10 Si 1.86794 * 120.00126 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47149 * 90.00166 * 10 8 6 12 12 H 1.48505 * 109.46934 * 209.99833 * 10 8 6 13 13 H 1.48500 * 109.47279 * 329.99562 * 10 8 6 14 14 C 1.34777 * 120.00187 * 90.00410 * 4 3 2 15 15 O 1.21583 * 120.00360 * 180.02562 * 14 4 3 16 16 N 1.34775 * 119.99557 * 359.97438 * 14 4 3 17 17 C 1.39946 * 120.00021 * 184.59384 * 16 14 4 18 18 C 1.38882 * 120.06944 * 144.91498 * 17 16 14 19 19 C 1.38102 * 119.93180 * 179.97438 * 18 17 16 20 20 C 1.38296 * 120.06554 * 0.25527 * 19 18 17 21 21 C 1.38260 * 120.14182 * 359.49375 * 20 19 18 22 22 C 1.50700 * 119.96586 * 180.25412 * 21 20 19 23 23 O 1.42901 * 109.47220 * 270.25322 * 22 21 20 24 24 C 1.42894 * 113.99925 * 179.97438 * 23 22 21 25 25 C 1.38129 * 120.07039 * 0.50365 * 21 20 19 26 26 H 1.08003 * 120.00432 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99788 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00251 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.47018 * 4.99659 * 3 2 1 30 30 H 1.08995 * 109.46988 * 245.00043 * 3 2 1 31 31 H 1.09002 * 109.47565 * 30.00507 * 5 4 3 32 32 H 1.09002 * 109.47344 * 150.00332 * 5 4 3 33 33 H 0.96999 * 119.99436 * 179.97438 * 9 8 6 34 34 H 0.97001 * 120.00296 * 4.60383 * 16 14 4 35 35 H 1.08003 * 120.03830 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.96246 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.92776 * 179.74273 * 20 19 18 38 38 H 1.09008 * 109.47110 * 30.25137 * 22 21 20 39 39 H 1.08996 * 109.47293 * 150.25047 * 22 21 20 40 40 H 1.08998 * 109.47170 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.47378 * 300.00102 * 24 23 22 42 42 H 1.09002 * 109.47516 * 60.00223 * 24 23 22 43 43 H 1.07998 * 120.03935 * 179.77028 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8650 2.4248 6 6 2.8441 3.3438 2.4804 7 1 3.3039 3.8370 1.6368 8 6 2.5192 4.0667 3.6086 9 7 2.7678 5.3572 3.6568 10 14 1.7259 3.2131 5.0685 11 1 2.7826 2.7229 5.9895 12 1 0.8495 4.1729 5.7869 13 1 0.9147 2.0649 4.5898 14 6 4.2497 0.8663 0.9825 15 8 5.0215 0.8882 1.9216 16 7 4.6496 0.3756 -0.2073 17 6 5.9206 -0.1957 -0.3370 18 6 6.1133 -1.2792 -1.1843 19 6 7.3688 -1.8404 -1.3106 20 6 8.4324 -1.3280 -0.5904 21 6 8.2449 -0.2462 0.2500 22 6 9.4079 0.3126 1.0286 23 8 9.5010 -0.3533 2.2896 24 6 10.5777 0.1039 3.1102 25 6 6.9916 0.3197 0.3807 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6212 1.4026 -0.9313 31 1 1.4886 1.6967 2.5460 32 1 3.0988 1.3605 3.2260 33 1 2.5389 5.8659 4.4503 34 1 4.0567 0.4184 -0.9738 35 1 5.2824 -1.6819 -1.7446 36 1 7.5192 -2.6832 -1.9690 37 1 9.4125 -1.7712 -0.6876 38 1 10.3292 0.1576 0.4670 39 1 9.2569 1.3797 1.1916 40 1 10.5797 -0.4501 4.0489 41 1 11.5230 -0.0557 2.5916 42 1 10.4514 1.1668 3.3164 43 1 6.8450 1.1623 1.0401 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292640407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:31 Heat of formation + Delta-G solvation = -9.283178 kcal Electronic energy + Delta-G solvation = -24666.647308 eV Core-core repulsion = 21099.436747 eV Total energy + Delta-G solvation = -3567.210561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37275 -38.85860 -37.48322 -35.90117 -34.53009 -33.15558 -32.17000 -31.71633 -29.64457 -27.92186 -27.23480 -25.63182 -25.28910 -23.26369 -21.98940 -21.09415 -20.14943 -19.30403 -17.74059 -17.01524 -16.89867 -16.36979 -16.12815 -15.85413 -15.34060 -15.05218 -14.77626 -14.53636 -14.31665 -13.72833 -13.58671 -13.52175 -12.99342 -12.65888 -12.52256 -12.33448 -12.24464 -11.91729 -11.64645 -11.49574 -11.42067 -11.24989 -11.04930 -10.95513 -10.52763 -10.19517 -9.97219 -9.67196 -9.59706 -9.33672 -9.30556 -8.70221 -8.58246 -8.03722 -7.65101 -6.08530 -4.07180 1.35363 1.57567 2.29027 3.14670 3.30793 3.36711 3.39193 3.54662 3.87910 4.21998 4.36499 4.40604 4.89196 4.91765 5.07990 5.18589 5.21598 5.24477 5.27153 5.29667 5.36223 5.41182 5.42468 5.48936 5.65519 5.74281 5.85714 5.88091 6.03559 6.10165 6.42228 6.47187 6.64494 6.65401 6.66922 6.79060 6.81731 6.89954 7.15702 7.25334 7.28299 7.47158 7.62341 8.42758 8.47505 8.94214 9.13402 9.51984 11.04833 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.004574 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.285193 B = 6119.768123 C = 8031.056912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.598 5.598 5 C 0.232 3.768 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.701 3.299 15 O -0.563 6.563 16 N -0.695 5.695 17 C 0.175 3.825 18 C -0.148 4.148 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.077 4.077 22 C 0.105 3.895 23 O -0.382 6.382 24 C 0.031 3.969 25 C -0.098 4.098 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.043 0.957 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.013 -13.263 -11.363 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.192 4.192 3 C 0.013 3.987 4 N -0.332 5.332 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.403 3.597 15 O -0.439 6.439 16 N -0.345 5.345 17 C 0.079 3.921 18 C -0.170 4.170 19 C -0.125 4.125 20 C -0.144 4.144 21 C -0.077 4.077 22 C 0.028 3.972 23 O -0.301 6.301 24 C -0.066 4.066 25 C -0.118 4.118 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.329 -13.151 -10.410 18.304 hybrid contribution -0.611 -0.082 0.383 0.726 sum 6.718 -13.232 -10.026 17.910 Atomic orbital electron populations 1.23851 0.95801 1.01906 1.00138 1.23469 0.96518 0.99001 1.00261 1.20556 0.93201 0.95726 0.89219 1.47206 1.09051 1.63337 1.13608 1.19607 0.94773 0.94971 0.79517 1.21345 1.41143 0.91166 1.03105 0.90744 1.24827 0.95273 0.94708 0.98078 1.69899 1.47825 1.06599 1.29271 0.86875 0.79894 0.79661 0.83421 1.19855 1.21081 1.19019 1.15897 0.83008 0.78510 0.82333 1.90914 1.52467 1.61105 1.39376 1.42914 1.15732 1.63712 1.12132 1.17516 0.84220 0.92800 0.97605 1.20880 0.98100 0.95614 1.02363 1.20793 0.92197 0.99784 0.99772 1.20904 0.99090 0.96525 0.97855 1.19437 0.94046 0.96943 0.97316 1.21322 0.95453 0.96059 0.84327 1.88008 1.51322 1.62239 1.28488 1.22745 0.89140 0.99682 0.95011 1.21365 0.90017 1.01146 0.99280 0.88130 0.88673 0.87679 0.88762 0.91200 0.95014 0.94388 0.92578 0.76104 0.85983 0.85894 0.86336 0.92654 0.92210 0.89653 0.94340 0.93847 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 14.32 29.01 0.42 -1.71 16 2 C -0.17 -2.28 9.85 -36.03 -0.35 -2.64 16 3 C 0.14 2.11 5.65 -5.19 -0.03 2.08 16 4 N -0.60 -12.29 2.44 -182.18 -0.44 -12.73 16 5 C 0.23 5.68 4.23 -5.19 -0.02 5.66 16 6 C -0.53 -15.11 9.94 -34.44 -0.34 -15.46 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 10 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 14 C 0.70 14.72 8.12 -86.92 -0.71 14.02 16 15 O -0.56 -14.23 13.36 5.29 0.07 -14.16 16 16 N -0.70 -11.26 5.22 -14.22 -0.07 -11.33 16 17 C 0.17 2.78 6.30 -83.69 -0.53 2.25 16 18 C -0.15 -1.87 9.97 -39.39 -0.39 -2.27 16 19 C -0.11 -1.23 10.04 -39.61 -0.40 -1.62 16 20 C -0.12 -1.56 9.70 -39.55 -0.38 -1.94 16 21 C -0.08 -1.14 5.51 -104.65 -0.58 -1.72 16 22 C 0.10 1.41 6.06 36.01 0.22 1.62 16 23 O -0.38 -5.79 10.69 -35.23 -0.38 -6.17 16 24 C 0.03 0.34 11.01 101.05 1.11 1.45 16 25 C -0.10 -1.71 8.35 -39.40 -0.33 -2.04 16 26 H 0.10 1.16 7.84 -52.48 -0.41 0.75 16 27 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.07 0.88 6.30 -51.93 -0.33 0.56 16 31 H 0.03 0.75 7.13 -51.93 -0.37 0.37 16 32 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.40 5.14 6.52 -40.82 -0.27 4.87 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.06 0.58 8.09 -51.92 -0.42 0.16 16 39 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.15 3.02 6.23 -52.49 -0.33 2.70 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -35.13 364.22 -7.91 -43.04 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.27 Total: 5.97 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.41 Total: -0.26 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.25 Total: -50.91 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.31 Total: -20.33 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.13 -7.91 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292640407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.757 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds