Wall clock time and date at job start Tue Mar 31 2020 08:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39666 * 120.04760 * 179.97438 * 10 9 8 12 12 C 1.46504 * 119.99487 * 0.02803 * 11 10 9 13 13 C 1.53004 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.09011 * 109.46586 * 304.99864 * 13 12 11 15 15 C 1.47200 * 109.47450 * 64.99753 * 13 12 11 16 16 N 9.98652 * 118.51970 * 56.38865 * 3 1 2 17 17 C 1.53001 * 109.47314 * 185.00408 * 13 12 11 18 18 C 1.50701 * 109.47106 * 175.00182 * 17 13 12 19 19 H 1.07995 * 119.99847 * 359.97438 * 18 17 13 20 20 C 1.37874 * 119.99850 * 180.02562 * 18 17 13 21 21 N 1.31512 * 120.00164 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99945 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47143 * 90.00586 * 22 20 18 24 24 H 1.48503 * 109.47036 * 210.00325 * 22 20 18 25 25 H 1.48496 * 109.47554 * 330.00261 * 22 20 18 26 26 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 31 31 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 32 32 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 33 33 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 34 34 H 1.08000 * 119.95233 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.93154 * 180.25528 * 8 7 6 36 36 H 1.07998 * 119.98115 * 179.70100 * 9 8 7 37 37 H 0.96996 * 120.00573 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47152 * 299.99447 * 12 11 10 39 39 H 1.08998 * 109.47401 * 60.00314 * 12 11 10 40 40 H 1.09004 * 109.46734 * 294.99650 * 17 13 12 41 41 H 1.08992 * 109.47416 * 54.99484 * 17 13 12 42 42 H 0.96996 * 120.00231 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.06257 * 359.97421 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3977 -1.3837 7 6 6.1827 0.7993 -0.3887 8 6 7.5420 0.6099 -0.5491 9 6 8.0299 0.0309 -1.7047 10 6 7.1536 -0.3678 -2.7063 11 7 7.6465 -0.9526 -3.8749 12 6 9.0887 -1.1466 -4.0447 13 6 9.3589 -1.8019 -5.4007 14 1 8.7840 -2.7248 -5.4792 15 6 8.9601 -0.8821 -6.4785 16 7 8.6547 -0.1713 -7.3077 17 6 10.8506 -2.1183 -5.5260 18 6 11.0981 -2.8733 -6.8066 19 1 10.2739 -3.1046 -7.4649 20 6 12.3767 -3.2695 -7.1372 21 7 12.5926 -3.9287 -8.2544 22 14 13.8022 -2.8698 -5.9980 23 1 13.9796 -3.9740 -5.0210 24 1 15.0442 -2.7109 -6.7964 25 1 13.5161 -1.6069 -5.2712 26 6 5.7871 -0.1828 -2.5445 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.8047 1.2566 0.5137 35 1 8.2247 0.9195 0.2285 36 1 9.0932 -0.1116 -1.8295 37 1 7.0342 -1.2304 -4.5739 38 1 9.5929 -0.1812 -4.0005 39 1 9.4650 -1.7899 -3.2494 40 1 11.4195 -1.1886 -5.5366 41 1 11.1654 -2.7272 -4.6786 42 1 13.4922 -4.2071 -8.4872 43 1 5.1036 -0.4917 -3.3216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558506708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:26 Heat of formation + Delta-G solvation = -36.522905 kcal Electronic energy + Delta-G solvation = -23145.135830 eV Core-core repulsion = 19576.744066 eV Total energy + Delta-G solvation = -3568.391764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23078 -38.68684 -37.88399 -36.89348 -34.92107 -33.60017 -31.97713 -31.50024 -29.80319 -28.86088 -26.97109 -26.63118 -24.06156 -23.45613 -22.30388 -21.61490 -20.92873 -18.39396 -17.27703 -17.20305 -16.99733 -16.54402 -16.19909 -15.76046 -15.53565 -15.41721 -15.34786 -14.60152 -14.02025 -14.00760 -13.60782 -13.39618 -13.26769 -13.02926 -12.81518 -12.55168 -12.47169 -12.24576 -12.13119 -11.75055 -11.64667 -11.53844 -11.35219 -11.11751 -10.96788 -10.86603 -10.51275 -10.13356 -10.10410 -9.94464 -9.86182 -9.41264 -8.67118 -8.30671 -7.39949 -6.16020 -4.17813 1.50672 1.63971 2.90599 3.22593 3.30849 3.31860 3.31893 3.43482 3.47277 3.63693 3.90630 4.33489 4.48275 4.55665 4.68374 4.80085 4.87515 4.90949 4.97091 4.99648 5.11529 5.13853 5.18310 5.20395 5.29338 5.31034 5.41211 5.49391 5.59559 5.81037 5.90631 6.03800 6.14811 6.30570 6.33602 6.53047 6.60103 6.69576 6.82315 7.01560 7.29716 7.42669 7.56167 7.74990 8.24990 8.35084 8.86242 9.43024 10.96845 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.002246 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.542670 B =12463.611873 C =12997.349679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.309 6.309 6 C 0.173 3.827 7 C -0.273 4.273 8 C -0.034 4.034 9 C -0.232 4.232 10 C 0.260 3.740 11 N -0.742 5.742 12 C 0.128 3.872 13 C 0.007 3.993 14 H 0.114 0.886 15 C 0.235 3.765 16 N -0.457 5.457 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.263 1.263 26 C -0.233 4.233 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.326 9.787 21.800 30.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.222 6.222 6 C 0.127 3.873 7 C -0.294 4.294 8 C -0.053 4.053 9 C -0.255 4.255 10 C 0.154 3.846 11 N -0.370 5.370 12 C 0.003 3.997 13 C -0.015 4.015 14 H 0.132 0.868 15 C -0.083 4.083 16 N -0.134 5.134 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.705 3.295 23 H -0.199 1.199 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.256 4.256 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.476 10.533 20.273 29.382 hybrid contribution 0.648 0.026 0.613 0.892 sum -17.828 10.560 20.886 29.421 Atomic orbital electron populations 1.22764 0.80842 1.03056 0.99922 1.87983 1.19801 1.27078 1.95395 1.22595 0.91770 0.85797 1.01326 1.22788 0.93381 0.98276 0.86798 1.86092 1.20598 1.76803 1.38756 1.18559 0.81768 0.93452 0.93554 1.20890 0.94211 1.13406 1.00894 1.20620 0.94320 0.94352 0.96045 1.20607 0.99398 1.10079 0.95397 1.17447 0.91248 0.89500 0.86379 1.44885 1.07260 1.66821 1.18005 1.21578 0.80564 1.00881 0.96647 1.19218 1.02076 0.94386 0.85810 0.86840 1.28859 0.92084 0.93315 0.94016 1.80980 1.10563 1.11373 1.10435 1.19616 0.87404 0.97910 0.99207 1.20980 0.95283 1.36101 1.04546 0.90771 1.24990 0.98798 0.94268 0.95035 1.69898 1.21894 1.38154 1.23305 0.86812 0.82118 0.79529 0.81082 1.19927 1.21267 1.18793 1.19642 0.93614 1.13047 0.99331 0.89423 0.94120 0.93900 0.91192 0.92082 0.91047 0.90445 0.86312 0.86098 0.85722 0.76401 0.91455 0.89994 0.95399 0.94445 0.92469 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.68 10.67 -40.08 -0.43 -4.11 16 3 C 0.06 0.44 6.32 37.16 0.23 0.68 16 4 C 0.06 0.52 5.12 37.16 0.19 0.71 16 5 O -0.31 -3.75 10.10 -24.26 -0.25 -3.99 16 6 C 0.17 2.18 6.68 -39.25 -0.26 1.92 16 7 C -0.27 -3.01 9.04 -39.39 -0.36 -3.36 16 8 C -0.03 -0.37 10.03 -39.64 -0.40 -0.77 16 9 C -0.23 -2.81 9.31 -39.36 -0.37 -3.18 16 10 C 0.26 3.40 6.65 -83.81 -0.56 2.84 16 11 N -0.74 -9.51 5.52 -58.65 -0.32 -9.84 16 12 C 0.13 1.69 4.27 -4.04 -0.02 1.67 16 13 C 0.01 0.12 2.26 -93.40 -0.21 -0.09 16 14 H 0.11 1.75 8.14 -51.92 -0.42 1.32 16 15 C 0.23 4.55 13.45 -20.82 -0.28 4.27 16 16 N -0.46 -9.86 18.52 42.08 0.78 -9.08 16 17 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 18 C -0.53 -13.91 9.15 -34.44 -0.32 -14.22 16 19 H 0.07 2.14 7.84 -52.49 -0.41 1.72 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 22 Si 0.88 20.17 27.47 -169.99 -4.67 15.51 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 26 C -0.23 -3.08 9.83 -39.24 -0.39 -3.47 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 33 H 0.08 0.48 7.65 -51.93 -0.40 0.08 16 34 H 0.12 1.02 6.29 -52.49 -0.33 0.69 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.38 6.73 -52.49 -0.35 1.03 16 37 H 0.40 4.97 8.23 -40.82 -0.34 4.63 16 38 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 39 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 40 H 0.03 0.58 7.20 -51.93 -0.37 0.20 16 41 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -32.86 367.41 -6.75 -39.61 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.37 Total: 2.17 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.81 Total: -9.99 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 1.23 Total: -44.74 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.67 Total: -8.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.86 -6.75 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558506708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.089 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds