Wall clock time and date at job start Tue Mar 31 2020 08:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47319 * 64.99884 * 4 3 2 6 6 C 1.35897 * 117.00481 * 180.02562 * 5 4 3 7 7 C 1.38821 * 120.01275 * 359.72205 * 6 5 4 8 8 C 1.38173 * 120.08789 * 179.72138 * 7 6 5 9 9 C 1.38157 * 120.13180 * 0.55631 * 8 7 6 10 10 C 1.38929 * 120.03217 * 359.71781 * 9 8 7 11 11 N 1.39666 * 120.04760 * 179.97438 * 10 9 8 12 12 C 1.46504 * 119.99487 * 0.02803 * 11 10 9 13 13 C 1.53004 * 109.47047 * 179.97438 * 12 11 10 14 14 H 1.09011 * 109.46586 * 304.99864 * 13 12 11 15 15 C 1.47200 * 109.47450 * 64.99753 * 13 12 11 16 16 N 9.98652 * 118.51970 * 56.38865 * 3 1 2 17 17 C 1.53001 * 109.47314 * 185.00408 * 13 12 11 18 18 C 1.50701 * 109.47106 * 175.00182 * 17 13 12 19 19 H 1.07995 * 119.99847 * 359.97438 * 18 17 13 20 20 C 1.37874 * 119.99850 * 180.02562 * 18 17 13 21 21 N 1.31512 * 120.00164 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99945 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47143 * 90.00586 * 22 20 18 24 24 H 1.48503 * 109.47036 * 210.00325 * 22 20 18 25 25 H 1.48496 * 109.47554 * 330.00261 * 22 20 18 26 26 C 1.38564 * 120.02346 * 180.02562 * 6 5 4 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 31 31 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 32 32 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 33 33 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 34 34 H 1.08000 * 119.95233 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.93154 * 180.25528 * 8 7 6 36 36 H 1.07998 * 119.98115 * 179.70100 * 9 8 7 37 37 H 0.96996 * 120.00573 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47152 * 299.99447 * 12 11 10 39 39 H 1.08998 * 109.47401 * 60.00314 * 12 11 10 40 40 H 1.09004 * 109.46734 * 294.99650 * 17 13 12 41 41 H 1.08992 * 109.47416 * 54.99484 * 17 13 12 42 42 H 0.96996 * 120.00231 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.06257 * 359.97421 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3977 -1.3837 7 6 6.1827 0.7993 -0.3887 8 6 7.5420 0.6099 -0.5491 9 6 8.0299 0.0309 -1.7047 10 6 7.1536 -0.3678 -2.7063 11 7 7.6465 -0.9526 -3.8749 12 6 9.0887 -1.1466 -4.0447 13 6 9.3589 -1.8019 -5.4007 14 1 8.7840 -2.7248 -5.4792 15 6 8.9601 -0.8821 -6.4785 16 7 8.6547 -0.1713 -7.3077 17 6 10.8506 -2.1183 -5.5260 18 6 11.0981 -2.8733 -6.8066 19 1 10.2739 -3.1046 -7.4649 20 6 12.3767 -3.2695 -7.1372 21 7 12.5926 -3.9287 -8.2544 22 14 13.8022 -2.8698 -5.9980 23 1 13.9796 -3.9740 -5.0210 24 1 15.0442 -2.7109 -6.7964 25 1 13.5161 -1.6069 -5.2712 26 6 5.7871 -0.1828 -2.5445 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.8047 1.2566 0.5137 35 1 8.2247 0.9195 0.2285 36 1 9.0932 -0.1116 -1.8295 37 1 7.0342 -1.2304 -4.5739 38 1 9.5929 -0.1812 -4.0005 39 1 9.4650 -1.7899 -3.2494 40 1 11.4195 -1.1886 -5.5366 41 1 11.1654 -2.7272 -4.6786 42 1 13.4922 -4.2071 -8.4872 43 1 5.1036 -0.4917 -3.3216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558506708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:26 Heat of formation + Delta-G solvation = -58.113143 kcal Electronic energy + Delta-G solvation = -23146.072053 eV Core-core repulsion = 19576.744066 eV Total energy + Delta-G solvation = -3569.327987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06522 -39.56506 -38.72709 -38.05203 -36.20530 -35.23921 -33.62594 -32.20952 -30.76935 -29.87483 -28.30595 -27.21916 -25.20969 -24.20111 -23.49752 -23.03870 -21.80817 -19.24287 -18.97490 -18.55198 -17.79111 -17.37319 -17.09648 -16.70045 -16.40677 -16.29848 -16.10483 -15.92329 -15.36628 -15.06256 -14.87990 -14.53468 -14.41827 -14.29648 -13.98120 -13.88400 -13.53560 -13.30555 -13.15604 -12.92980 -12.76166 -12.61925 -12.32808 -12.26777 -12.14112 -11.85546 -11.75017 -11.67816 -11.65258 -11.33338 -10.81626 -10.72308 -10.66605 -9.19572 -8.32074 -8.24321 -6.30605 0.62576 0.75492 1.44824 1.47637 1.57565 1.88536 1.92864 2.13896 2.42083 2.66677 2.81840 3.02063 3.09749 3.16819 3.87873 3.92113 4.09123 4.14126 4.24727 4.30874 4.36608 4.39995 4.46524 4.51238 4.53026 4.55822 4.59455 4.71234 4.77430 4.81957 4.83863 4.86640 5.06506 5.20970 5.40249 5.42303 5.48744 5.62514 5.69121 5.76731 6.19266 6.23677 6.40641 6.58882 6.68973 6.77274 6.80669 7.34062 8.92402 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.027137 B = 0.002246 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.542670 B =12463.611873 C =12997.349679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.059 3.941 4 C 0.054 3.946 5 O -0.332 6.332 6 C 0.160 3.840 7 C -0.272 4.272 8 C -0.034 4.034 9 C -0.242 4.242 10 C 0.249 3.751 11 N -0.746 5.746 12 C 0.140 3.860 13 C 0.015 3.985 14 H 0.125 0.875 15 C 0.247 3.753 16 N -0.502 5.502 17 C -0.001 4.001 18 C -0.532 4.532 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.257 1.257 24 H -0.298 1.298 25 H -0.233 1.233 26 C -0.256 4.256 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.264 0.736 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.866 11.112 25.702 33.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.246 6.246 6 C 0.114 3.886 7 C -0.293 4.293 8 C -0.052 4.052 9 C -0.265 4.265 10 C 0.144 3.856 11 N -0.374 5.374 12 C 0.015 3.985 13 C -0.007 4.007 14 H 0.142 0.858 15 C -0.070 4.070 16 N -0.179 5.179 17 C -0.040 4.040 18 C -0.571 4.571 19 H 0.047 0.953 20 C -0.195 4.195 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.181 1.181 24 H -0.225 1.225 25 H -0.156 1.156 26 C -0.279 4.279 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.055 11.878 24.210 32.453 hybrid contribution 0.349 -0.384 -0.619 0.808 sum -17.705 11.493 23.591 31.656 Atomic orbital electron populations 1.22911 0.79426 1.03684 1.01014 1.87929 1.21562 1.28660 1.95658 1.22767 0.91025 0.85212 1.02724 1.23109 0.94254 0.99186 0.85461 1.86071 1.20485 1.77268 1.40748 1.18759 0.82403 0.93617 0.93818 1.21204 0.94230 1.12666 1.01186 1.21003 0.94716 0.93245 0.96252 1.20867 0.99921 1.10162 0.95515 1.17559 0.91333 0.90062 0.86682 1.44817 1.07045 1.67335 1.18216 1.21480 0.80952 1.01324 0.94727 1.19273 0.99955 0.94647 0.86818 0.85756 1.29520 0.90995 0.92722 0.93729 1.80979 1.11928 1.13157 1.11867 1.19570 0.89870 0.97572 0.97033 1.21375 0.93908 1.35684 1.06085 0.95279 1.26064 1.02419 0.94264 0.96787 1.70089 1.22529 1.40689 1.26163 0.85682 0.77207 0.81011 0.78943 1.18116 1.22458 1.15599 1.19759 0.93980 1.14284 0.99915 0.89163 0.92232 0.93551 0.88098 0.92225 0.90710 0.88244 0.83896 0.83178 0.84423 0.76580 0.90962 0.87372 0.94926 0.91246 0.92684 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.70 10.67 -144.35 -1.54 -9.24 16 3 C 0.06 0.75 6.32 71.98 0.45 1.20 16 4 C 0.05 0.80 5.12 71.98 0.37 1.17 16 5 O -0.33 -7.87 10.10 -87.76 -0.89 -8.75 16 6 C 0.16 3.89 6.68 22.49 0.15 4.04 16 7 C -0.27 -5.30 9.04 22.39 0.20 -5.10 16 8 C -0.03 -0.62 10.03 22.23 0.22 -0.40 16 9 C -0.24 -5.18 9.31 22.42 0.21 -4.98 16 10 C 0.25 6.15 6.65 38.20 0.25 6.41 16 11 N -0.75 -18.06 5.52 -339.46 -1.87 -19.93 16 12 C 0.14 3.28 4.27 86.38 0.37 3.65 16 13 C 0.01 0.47 2.26 -12.60 -0.03 0.44 16 14 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 15 C 0.25 9.52 13.45 89.46 1.20 10.72 16 16 N -0.50 -21.97 18.52 19.98 0.37 -21.60 16 17 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 18 C -0.53 -27.99 9.15 25.60 0.23 -27.75 16 19 H 0.03 1.74 7.84 -2.91 -0.02 1.71 16 20 C 0.00 0.07 5.47 84.65 0.46 0.54 16 21 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 22 Si 0.95 40.45 27.47 68.60 1.88 42.33 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.23 -8.74 6.54 99.48 0.65 -8.09 16 26 C -0.26 -6.74 9.83 22.49 0.22 -6.52 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.03 7.67 -2.39 -0.02 1.01 16 33 H 0.10 0.98 7.65 -2.39 -0.02 0.96 16 34 H 0.14 1.98 6.29 -2.91 -0.02 1.96 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.14 2.52 6.73 -2.91 -0.02 2.50 16 37 H 0.40 9.75 8.23 -92.71 -0.76 8.99 16 38 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 39 H 0.11 2.03 7.95 -2.39 -0.02 2.01 16 40 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 41 H 0.07 2.29 7.57 -2.39 -0.02 2.27 16 42 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -74.18 367.41 4.13 -70.05 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.20 Total: 20.31 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.68 Total: -14.99 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -1.20 Total: -99.72 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -2.43 Total: -17.99 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Total: -74.18 4.13 -70.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558506708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.937 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds