Wall clock time and date at job start Tue Mar 31 2020 08:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00063 * 2 1 4 4 H 1.48492 * 109.46839 * 274.45885 * 3 2 1 5 5 H 1.48502 * 109.47191 * 34.45874 * 3 2 1 6 6 H 1.48502 * 109.46985 * 154.45836 * 3 2 1 7 7 C 1.38953 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 340.45589 * 7 2 1 9 9 N 1.37088 * 119.99627 * 160.44483 * 7 2 1 10 10 C 1.34776 * 120.00592 * 302.47595 * 9 7 2 11 11 O 1.21289 * 120.00193 * 183.93698 * 10 9 7 12 12 C 1.50697 * 119.99674 * 3.93941 * 10 9 7 13 13 H 1.09003 * 109.69549 * 39.54583 * 12 10 9 14 14 C 1.53435 * 109.69489 * 278.99964 * 12 10 9 15 15 C 1.53101 * 109.55947 * 190.56338 * 14 12 10 16 16 C 1.53428 * 109.57741 * 70.05594 * 15 14 12 17 17 C 1.50594 * 108.33391 * 310.17351 * 16 15 14 18 18 N 1.32905 * 129.16264 * 196.56889 * 17 16 15 19 19 N 1.29025 * 108.63711 * 179.85522 * 18 17 16 20 20 N 1.29110 * 110.25357 * 0.03496 * 19 18 17 21 21 H 0.97000 * 126.00328 * 180.02562 * 20 19 18 22 22 C 1.34395 * 107.98806 * 0.05925 * 20 19 18 23 23 C 1.46505 * 119.99863 * 122.48078 * 9 7 2 24 24 C 1.54264 * 110.03394 * 61.97737 * 23 9 7 25 25 C 1.54960 * 104.16143 * 217.14229 * 24 23 9 26 26 C 1.54890 * 102.77946 * 37.88142 * 25 24 23 27 27 C 1.53872 * 110.03193 * 304.76187 * 23 9 7 28 28 H 0.97006 * 120.00506 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.45615 * 310.59542 * 14 12 10 30 30 H 1.09006 * 109.45769 * 70.53771 * 14 12 10 31 31 H 1.08996 * 109.45949 * 190.08950 * 15 14 12 32 32 H 1.09000 * 109.45319 * 310.02190 * 15 14 12 33 33 H 1.08995 * 109.68916 * 69.88723 * 16 15 14 34 34 H 1.09000 * 109.68763 * 190.42751 * 16 15 14 35 35 H 1.09003 * 110.01668 * 183.36796 * 23 9 7 36 36 H 1.09004 * 110.48589 * 335.78238 * 24 23 9 37 37 H 1.09000 * 110.48947 * 98.42511 * 24 23 9 38 38 H 1.09010 * 110.71726 * 279.56924 * 25 24 23 39 39 H 1.08997 * 110.92712 * 156.29583 * 25 24 23 40 40 H 1.08996 * 110.48581 * 203.40569 * 26 25 24 41 41 H 1.09003 * 110.47797 * 80.76576 * 26 25 24 42 42 H 1.09000 * 110.03300 * 238.57326 * 27 23 9 43 43 H 1.09009 * 110.03116 * 359.97438 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4013 2.1007 -1.3958 5 1 1.4959 2.6236 0.7922 6 1 3.5896 1.4147 0.6037 7 6 2.0088 -1.2034 0.0005 8 1 1.5155 -2.1116 0.3138 9 7 3.3204 -1.2377 -0.3968 10 6 3.6642 -0.8022 -1.6251 11 8 4.8125 -0.8985 -2.0034 12 6 2.6217 -0.1955 -2.5284 13 1 1.9491 0.4321 -1.9436 14 6 1.8218 -1.3096 -3.2163 15 6 0.9501 -0.7074 -4.3215 16 6 1.8407 -0.2309 -5.4764 17 6 2.9467 0.6157 -4.9036 18 7 3.7591 1.4661 -5.5225 19 7 4.5584 1.9815 -4.6506 20 7 4.3074 1.5046 -3.4773 21 1 4.7708 1.7353 -2.6570 22 6 3.2919 0.6319 -3.5925 23 6 4.3485 -1.7480 0.5136 24 6 4.0709 -3.2281 0.8480 25 6 4.4730 -3.3620 2.3385 26 6 3.9963 -2.0184 2.9440 27 6 4.3016 -0.9791 1.8457 28 1 -0.4851 0.8401 -0.0004 29 1 2.5096 -2.0351 -3.6509 30 1 1.1864 -1.8063 -2.4829 31 1 0.2545 -1.4625 -4.6873 32 1 0.3903 0.1383 -3.9220 33 1 2.2664 -1.0921 -5.9913 34 1 1.2498 0.3602 -6.1761 35 1 5.3337 -1.6465 0.0584 36 1 3.0133 -3.4571 0.7164 37 1 4.6837 -3.8811 0.2265 38 1 5.5532 -3.4691 2.4384 39 1 3.9583 -4.2009 2.8068 40 1 4.5547 -1.7895 3.8516 41 1 2.9267 -2.0516 3.1511 42 1 5.2642 -0.5051 2.0373 43 1 3.5141 -0.2260 1.8145 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597276607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:26 Heat of formation + Delta-G solvation = 52.642033 kcal Electronic energy + Delta-G solvation = -26922.588389 eV Core-core repulsion = 23390.355858 eV Total energy + Delta-G solvation = -3532.232531 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.02637 -39.66849 -37.37540 -36.13362 -34.41571 -33.30023 -32.03791 -30.11239 -29.66657 -28.21666 -27.32069 -24.93538 -24.10171 -22.70410 -22.22564 -20.47171 -20.27475 -19.40863 -19.04994 -17.78570 -17.28775 -16.27272 -15.73697 -15.34355 -14.83515 -14.46934 -14.41473 -14.01748 -13.93249 -13.67735 -13.29497 -13.25097 -12.83896 -12.80529 -12.22178 -12.09380 -11.48230 -11.33514 -11.17986 -11.05749 -10.96120 -10.91549 -10.84485 -10.67203 -10.62464 -10.38843 -10.27241 -10.08881 -10.02158 -9.90299 -9.80471 -9.25237 -8.90936 -8.35786 -7.72532 -6.71086 -4.49197 2.02604 2.78288 2.90918 2.98828 3.01258 3.17851 3.35512 3.82746 4.13484 4.60055 4.64368 5.02257 5.10007 5.15648 5.27007 5.30664 5.36233 5.44267 5.71307 5.75435 5.83170 5.88784 5.91994 6.01148 6.05620 6.07405 6.09467 6.14973 6.23862 6.30502 6.33183 6.35291 6.40193 6.48441 6.58591 6.70315 6.73904 6.80048 6.81553 6.88773 7.25055 7.47883 7.60411 8.25862 8.71447 8.85943 9.00106 9.45300 10.37273 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.006296 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.207298 B = 4445.877389 C = 4688.053707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.080 3.920 3 Si 0.832 3.168 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.344 4.344 8 H 0.104 0.896 9 N -0.456 5.456 10 C 0.492 3.508 11 O -0.591 6.591 12 C -0.037 4.037 13 H 0.124 0.876 14 C -0.092 4.092 15 C -0.117 4.117 16 C -0.030 4.030 17 C -0.029 4.029 18 N -0.265 5.265 19 N -0.106 5.106 20 N -0.370 5.370 21 H 0.444 0.556 22 C 0.033 3.967 23 C 0.129 3.871 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.116 4.116 27 C -0.130 4.130 28 H 0.278 0.722 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -2.609 0.553 3.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.128 4.128 3 Si 0.657 3.343 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.471 4.471 8 H 0.121 0.879 9 N -0.177 5.177 10 C 0.281 3.719 11 O -0.475 6.475 12 C -0.060 4.060 13 H 0.141 0.859 14 C -0.131 4.131 15 C -0.155 4.155 16 C -0.069 4.069 17 C -0.169 4.169 18 N -0.131 5.131 19 N -0.085 5.085 20 N -0.087 5.087 21 H 0.289 0.711 22 C -0.104 4.104 23 C 0.025 3.975 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.168 4.168 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.641 -1.597 -0.553 3.136 hybrid contribution 0.068 0.621 1.483 1.609 sum 2.710 -0.976 0.930 3.026 Atomic orbital electron populations 1.69681 1.05874 1.28289 1.44185 1.25584 0.95091 0.97677 0.94474 0.87794 0.82448 0.85041 0.78977 1.19657 1.20316 1.17513 1.18838 0.83627 0.95883 1.48777 0.87854 1.43753 1.07537 1.56505 1.09859 1.20486 0.88265 0.80674 0.82506 1.90573 1.21169 1.60879 1.74877 1.20222 0.96377 0.96968 0.92461 0.85895 1.21383 0.98144 0.95761 0.97767 1.21643 0.97597 1.01288 0.94971 1.19966 0.92259 0.97003 0.97684 1.21595 1.02329 1.02600 0.90361 1.74672 1.04187 1.09641 1.24596 1.78413 1.21357 1.21672 0.87015 1.44566 1.24477 1.28871 1.10806 0.71094 1.21656 0.93402 0.97204 0.98157 1.21735 0.92721 0.92916 0.90119 1.22632 1.02524 0.96081 0.95159 1.22436 0.99959 0.97437 0.96063 1.22260 1.01332 0.94727 0.97088 1.22458 1.01148 0.98928 0.94301 0.91120 0.91919 0.87975 0.90446 0.91264 0.90242 0.90217 0.90077 0.90081 0.92544 0.92296 0.92064 0.92749 0.91148 0.93019 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.23 13.96 55.50 0.77 -19.45 16 2 C 0.08 1.83 4.05 -17.47 -0.07 1.76 16 3 Si 0.83 17.85 23.64 -169.99 -4.02 13.83 16 4 H -0.27 -5.73 6.06 56.52 0.34 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.25 -5.37 6.21 56.52 0.35 -5.02 16 7 C -0.34 -7.62 6.71 -14.94 -0.10 -7.72 16 8 H 0.10 2.46 7.16 -52.49 -0.38 2.08 16 9 N -0.46 -9.61 1.78 -106.54 -0.19 -9.79 16 10 C 0.49 10.69 5.50 -10.99 -0.06 10.63 16 11 O -0.59 -13.87 15.24 5.55 0.08 -13.79 16 12 C -0.04 -0.76 1.33 -92.78 -0.12 -0.88 16 13 H 0.12 2.65 2.76 -51.93 -0.14 2.50 16 14 C -0.09 -1.64 5.07 -26.45 -0.13 -1.77 16 15 C -0.12 -1.75 5.90 -26.46 -0.16 -1.90 16 16 C -0.03 -0.45 6.30 -27.71 -0.17 -0.63 16 17 C -0.03 -0.55 7.11 -83.13 -0.59 -1.14 16 18 N -0.26 -5.42 12.40 33.16 0.41 -5.01 16 19 N -0.11 -2.16 13.40 60.35 0.81 -1.35 16 20 N -0.37 -7.38 6.53 33.39 0.22 -7.16 16 21 H 0.44 8.13 8.96 -190.07 -1.70 6.43 16 22 C 0.03 0.67 5.65 -82.50 -0.47 0.20 16 23 C 0.13 2.44 3.28 -66.81 -0.22 2.23 16 24 C -0.13 -2.09 6.43 -25.03 -0.16 -2.25 16 25 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 26 C -0.12 -1.74 6.83 -25.08 -0.17 -1.91 16 27 C -0.13 -2.30 6.15 -25.62 -0.16 -2.46 16 28 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 29 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.10 1.91 7.36 -51.93 -0.38 1.53 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.62 6.96 -51.93 -0.36 1.26 16 36 H 0.08 1.45 6.66 -51.93 -0.35 1.10 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.61 4.79 -51.92 -0.25 1.36 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -26.39 325.96 -7.21 -33.59 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.45 Total: 11.93 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.76 Total: -7.71 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 2.02 Total: -42.77 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.02 Total: 13.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.39 -7.21 -33.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597276607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.236 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds