Wall clock time and date at job start Tue Mar 31 2020 09:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00319 * 2 1 4 4 H 1.48496 * 109.47551 * 274.98731 * 3 2 1 5 5 H 1.48503 * 109.47115 * 34.98608 * 3 2 1 6 6 H 1.48504 * 109.47317 * 154.98315 * 3 2 1 7 7 C 1.38809 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00164 * 185.06909 * 7 2 1 9 9 N 1.36938 * 120.00011 * 5.07126 * 7 2 1 10 10 C 1.47577 * 134.49552 * 353.49032 * 9 7 2 11 11 C 1.53939 * 86.12070 * 204.64005 * 10 9 7 12 12 C 1.47580 * 134.49288 * 173.48637 * 9 7 2 13 13 H 1.09002 * 113.87210 * 269.67584 * 12 9 7 14 14 C 1.53006 * 113.76912 * 41.05657 * 12 9 7 15 15 N 1.46502 * 109.47354 * 281.49428 * 14 12 9 16 16 C 1.34767 * 119.99840 * 179.97438 * 15 14 12 17 17 O 1.21287 * 120.00262 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00073 * 180.02562 * 16 15 14 19 19 H 1.09003 * 109.50754 * 59.90432 * 18 16 15 20 20 C 1.53148 * 109.51085 * 179.97438 * 18 16 15 21 21 C 1.53264 * 109.49309 * 189.41330 * 20 18 16 22 22 N 1.46472 * 108.79480 * 309.62272 * 21 20 18 23 23 C 1.36315 * 127.77555 * 197.17697 * 22 21 20 24 24 C 1.34856 * 106.68811 * 179.64333 * 23 22 21 25 25 N 1.34291 * 108.06986 * 0.27306 * 24 23 22 26 26 C 1.30091 * 109.21490 * 0.02562 * 25 24 23 27 27 C 1.51044 * 127.39007 * 179.91578 * 26 25 24 28 28 H 0.97002 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.09001 * 113.77125 * 90.33090 * 10 9 7 30 30 H 1.09003 * 113.86662 * 318.95266 * 10 9 7 31 31 H 1.09000 * 113.74201 * 222.04944 * 11 10 9 32 32 H 1.08998 * 113.74638 * 90.73404 * 11 10 9 33 33 H 1.09006 * 109.46575 * 161.49482 * 14 12 9 34 34 H 1.08996 * 109.46874 * 41.50129 * 14 12 9 35 35 H 0.97000 * 119.99364 * 0.02562 * 15 14 12 36 36 H 1.09008 * 109.46742 * 69.41055 * 20 18 16 37 37 H 1.09001 * 109.46478 * 309.42000 * 20 18 16 38 38 H 1.09000 * 109.58088 * 189.82865 * 21 20 18 39 39 H 1.08999 * 109.69630 * 69.48252 * 21 20 18 40 40 H 1.08002 * 126.65534 * 359.89879 * 23 22 21 41 41 H 1.07998 * 125.96495 * 180.24109 * 24 23 22 42 42 H 1.08999 * 109.71373 * 315.65257 * 27 26 25 43 43 H 1.09009 * 109.71285 * 76.29226 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0832 9 7 1.3294 -2.3858 -0.1038 10 6 -0.0978 -2.7610 -0.1101 11 6 0.3706 -4.1416 0.3841 12 6 1.7285 -3.7985 -0.2550 13 1 1.8204 -4.1224 -1.2918 14 6 2.9317 -4.1948 0.6030 15 7 4.1631 -3.7213 -0.0341 16 6 5.3560 -3.9570 0.5468 17 8 5.4103 -4.5616 1.5969 18 6 6.6226 -3.4695 -0.1083 19 1 6.5869 -2.3845 -0.2074 20 6 7.8275 -3.8646 0.7505 21 6 9.0861 -3.1732 0.2150 22 7 9.1772 -3.4102 -1.2276 23 6 10.2686 -3.2626 -2.0308 24 6 9.8808 -3.6012 -3.2772 25 7 8.5822 -3.9404 -3.2317 26 6 8.1521 -3.8249 -2.0094 27 6 6.7578 -4.0999 -1.4978 28 1 -0.4850 0.8401 0.0004 29 1 -0.5431 -2.7782 -1.1049 30 1 -0.7005 -2.2156 0.6162 31 1 -0.1415 -4.9761 -0.0948 32 1 0.4066 -4.2301 1.4699 33 1 2.9670 -5.2799 0.7002 34 1 2.8374 -3.7444 1.5911 35 1 4.1195 -3.2375 -0.8737 36 1 7.9625 -4.9456 0.7116 37 1 7.6550 -3.5570 1.7819 38 1 9.9667 -3.5837 0.7090 39 1 9.0261 -2.1018 0.4061 40 1 11.2539 -2.9413 -1.7271 41 1 10.5053 -3.5994 -4.1583 42 1 6.0244 -3.6691 -2.1795 43 1 6.6004 -5.1757 -1.4195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038422921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:17 Heat of formation + Delta-G solvation = 73.922943 kcal Electronic energy + Delta-G solvation = -24947.209468 eV Core-core repulsion = 21415.899747 eV Total energy + Delta-G solvation = -3531.309722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46472 -39.79327 -38.04330 -36.29981 -34.23289 -33.42759 -32.21772 -29.98820 -29.21185 -27.99128 -27.44518 -24.85827 -23.40020 -23.27081 -21.88219 -21.52967 -20.19227 -19.24508 -19.07376 -17.27358 -17.25781 -16.43410 -16.05162 -15.72388 -15.45700 -15.01511 -14.47037 -14.32560 -14.01549 -13.99302 -13.92027 -13.69273 -13.37930 -13.04414 -12.80463 -12.18067 -12.00951 -11.88320 -11.50029 -11.43609 -11.33476 -11.12770 -11.04984 -10.78788 -10.57166 -10.09237 -10.08168 -9.79980 -9.73279 -9.71218 -9.36817 -8.84387 -8.66658 -8.48543 -6.91854 -5.81933 -3.13454 1.89961 2.59126 2.75282 3.02628 3.32331 3.35336 3.38838 3.41939 4.07226 4.26471 4.36957 4.37821 4.44343 4.78146 4.87147 4.92022 4.98467 5.07621 5.22772 5.28626 5.36570 5.41907 5.45723 5.58246 5.62067 5.67827 5.72712 5.85663 5.88359 6.04285 6.15243 6.26874 6.37673 6.58571 6.62801 6.66521 6.81591 6.99751 7.22212 7.36811 7.55609 7.77271 7.93864 7.98588 8.41352 8.99811 9.66896 10.56294 11.35403 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.003862 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.052063 B = 7248.528283 C = 8123.714287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.162 3.838 11 C -0.156 4.156 12 C 0.125 3.875 13 H 0.051 0.949 14 C 0.123 3.877 15 N -0.709 5.709 16 C 0.519 3.481 17 O -0.548 6.548 18 C -0.115 4.115 19 H 0.105 0.895 20 C -0.113 4.113 21 C 0.102 3.898 22 N -0.456 5.456 23 C -0.057 4.057 24 C -0.032 4.032 25 N -0.488 5.488 26 C 0.213 3.787 27 C -0.024 4.024 28 H 0.253 0.747 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.174 0.826 41 H 0.169 0.831 42 H 0.104 0.896 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.130 -8.411 -1.017 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.036 3.964 11 C -0.195 4.195 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.359 5.359 16 C 0.304 3.696 17 O -0.426 6.426 18 C -0.137 4.137 19 H 0.123 0.877 20 C -0.151 4.151 21 C -0.020 4.020 22 N -0.139 5.139 23 C -0.191 4.191 24 C -0.180 4.180 25 N -0.207 5.207 26 C -0.050 4.050 27 C -0.063 4.063 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.239 0.761 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.191 0.809 41 H 0.186 0.814 42 H 0.122 0.878 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.704 -8.704 -0.734 17.970 hybrid contribution 1.124 1.692 0.069 2.032 sum 16.828 -7.012 -0.665 18.243 Atomic orbital electron populations 1.69833 1.05012 1.25317 1.56127 1.24792 0.95601 0.97397 1.02400 0.86225 0.78746 0.84030 0.77514 1.21623 1.21701 1.20724 1.18928 0.90632 0.81995 1.43349 0.90372 1.46061 1.02271 0.99936 1.84596 1.22132 0.87834 0.88546 0.97847 1.23785 0.96291 0.98977 1.00489 1.22512 0.92195 0.87559 0.96013 0.93213 1.21793 0.82624 0.97945 0.97833 1.45992 1.05943 1.57353 1.26586 1.20120 0.84687 0.79699 0.85060 1.90682 1.87262 1.41800 1.22879 1.21408 0.94066 1.02915 0.95297 0.87682 1.21702 0.90844 1.01894 1.00691 1.22078 1.00478 1.02144 0.77268 1.45464 1.09672 1.49882 1.08902 1.22562 0.93214 1.11352 0.91923 1.22367 0.92546 1.06307 0.96819 1.70064 1.11238 1.21081 1.18292 1.23135 0.92166 1.03239 0.86415 1.20093 0.89380 1.02608 0.94226 0.93646 0.95382 0.91277 0.92755 0.90540 0.92056 0.90957 0.76099 0.89982 0.87968 0.88807 0.89413 0.80915 0.81362 0.87812 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 11.51 55.49 0.64 -25.84 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 21.59 29.56 -169.99 -5.02 16.57 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.22 -5.79 10.50 -15.06 -0.16 -5.94 16 8 H 0.08 1.95 7.79 -52.48 -0.41 1.54 16 9 N -0.60 -14.24 3.57 -170.75 -0.61 -14.85 16 10 C 0.16 3.62 7.42 -2.98 -0.02 3.60 16 11 C -0.16 -2.76 7.86 -25.81 -0.20 -2.96 16 12 C 0.12 2.30 4.33 -66.86 -0.29 2.01 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.12 2.08 5.54 -4.04 -0.02 2.06 16 15 N -0.71 -10.90 5.42 -60.29 -0.33 -11.23 16 16 C 0.52 7.67 7.13 -10.99 -0.08 7.59 16 17 O -0.55 -9.74 15.83 5.55 0.09 -9.65 16 18 C -0.11 -1.30 2.53 -91.60 -0.23 -1.54 16 19 H 0.11 1.17 8.12 -51.93 -0.42 0.75 16 20 C -0.11 -1.10 4.67 -26.52 -0.12 -1.22 16 21 C 0.10 0.82 6.98 -3.92 -0.03 0.79 16 22 N -0.46 -4.86 3.13 -113.75 -0.36 -5.22 16 23 C -0.06 -0.57 11.64 -16.76 -0.20 -0.76 16 24 C -0.03 -0.38 11.87 -17.68 -0.21 -0.59 16 25 N -0.49 -6.99 11.24 -10.62 -0.12 -7.11 16 26 C 0.21 2.71 7.65 -155.24 -1.19 1.52 16 27 C -0.02 -0.27 5.47 -27.62 -0.15 -0.42 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.40 5.94 8.20 -40.82 -0.33 5.60 16 36 H 0.08 0.84 8.12 -51.92 -0.42 0.42 16 37 H 0.10 1.01 7.79 -51.93 -0.40 0.60 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.10 1.12 7.96 -51.93 -0.41 0.71 16 43 H 0.09 1.03 8.10 -51.92 -0.42 0.61 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -33.48 353.65 -9.94 -43.42 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.57 Total: 4.69 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -3.00 Total: 3.90 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.77 Total: -64.25 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.48 -9.94 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038422921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.344 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds