Wall clock time and date at job start Tue Mar 31 2020 08:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34678 * 116.99770 * 2 1 4 4 O 1.21426 * 119.99955 * 0.02562 * 3 2 1 5 5 C 1.48071 * 119.99537 * 180.02562 * 3 2 1 6 6 C 1.39351 * 119.72491 * 180.02562 * 5 3 2 7 7 C 1.38589 * 119.05593 * 179.97438 * 6 5 3 8 8 C 1.38619 * 118.48998 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.32145 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47057 * 270.02199 * 9 8 7 11 11 C 1.46848 * 110.99758 * 294.20890 * 10 9 8 12 12 C 1.53044 * 109.52114 * 174.16271 * 11 10 9 13 13 C 1.53113 * 109.28000 * 59.17920 * 12 11 10 14 14 C 1.50699 * 109.57797 * 182.41010 * 13 12 11 15 15 H 1.07997 * 120.00170 * 119.71252 * 14 13 12 16 16 C 1.37872 * 119.99651 * 299.71524 * 14 13 12 17 17 N 1.31520 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00073 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46994 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47207 * 119.99599 * 18 16 14 21 21 H 1.48501 * 109.47246 * 239.99962 * 18 16 14 22 22 C 1.53125 * 109.15972 * 302.34574 * 13 12 11 23 23 C 1.46848 * 110.99777 * 169.99906 * 10 9 8 24 24 C 1.38585 * 119.35926 * 359.97438 * 8 7 6 25 25 N 1.31507 * 120.90836 * 359.97438 * 24 8 7 26 26 H 1.08997 * 109.47363 * 59.99549 * 1 2 3 27 27 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46652 * 299.99353 * 1 2 3 29 29 H 1.08004 * 120.46968 * 359.97438 * 6 5 3 30 30 H 1.08000 * 120.75211 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.46982 * 30.01813 * 9 8 7 32 32 H 1.08998 * 109.47152 * 150.01892 * 9 8 7 33 33 H 1.09000 * 109.46079 * 294.17536 * 11 10 9 34 34 H 1.09000 * 109.46616 * 54.14568 * 11 10 9 35 35 H 1.08994 * 109.50011 * 299.23949 * 12 11 10 36 36 H 1.09005 * 109.50169 * 179.11701 * 12 11 10 37 37 H 1.09005 * 109.52503 * 62.24979 * 13 12 11 38 38 H 0.97001 * 119.99989 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.50462 * 297.71129 * 22 13 12 40 40 H 1.09007 * 109.53421 * 177.61678 * 22 13 12 41 41 H 1.08994 * 109.46105 * 305.85233 * 23 10 9 42 42 H 1.08996 * 109.46112 * 65.83669 * 23 10 9 43 43 H 1.08004 * 119.54816 * 179.72293 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5421 1.2775 -0.0006 6 6 4.1688 2.5221 0.0000 7 6 5.5536 2.5784 0.0000 8 6 6.2638 1.3879 0.0000 9 6 7.7707 1.4010 -0.0006 10 7 8.2598 1.4055 -1.3858 11 6 7.9158 0.1522 -2.0694 12 6 8.3101 0.2495 -3.5449 13 6 9.8146 0.5135 -3.6498 14 6 10.2001 0.6694 -5.0983 15 1 10.6428 1.5922 -5.4430 16 6 9.9877 -0.3661 -5.9834 17 7 9.4490 -1.4901 -5.5636 18 14 10.4649 -0.1727 -7.7791 19 1 11.0464 1.1767 -7.9942 20 1 11.4674 -1.2073 -8.1391 21 1 9.2597 -0.3334 -8.6317 22 6 10.1536 1.7984 -2.8890 23 6 9.7060 1.6561 -1.4324 24 6 5.5746 0.1856 0.0005 25 7 4.2597 0.1607 0.0015 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.5837 3.4299 0.0004 30 1 6.0677 3.5282 0.0000 31 1 8.1265 2.2941 0.5131 32 1 8.1420 0.5142 0.5130 33 1 8.4524 -0.6745 -1.6038 34 1 6.8426 -0.0216 -1.9909 35 1 7.7635 1.0673 -4.0144 36 1 8.0689 -0.6867 -4.0485 37 1 10.3624 -0.3226 -3.2151 38 1 9.2999 -2.2187 -6.1863 39 1 9.6361 2.6405 -3.3481 40 1 11.2296 1.9695 -2.9239 41 1 9.9330 2.5747 -0.8914 42 1 10.2342 0.8223 -0.9701 43 1 6.1248 -0.7437 -0.0040 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237446913.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:54 Heat of formation + Delta-G solvation = -49.071871 kcal Electronic energy + Delta-G solvation = -24454.141240 eV Core-core repulsion = 20885.205312 eV Total energy + Delta-G solvation = -3568.935928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00760 -39.90465 -38.18921 -36.65807 -34.57820 -32.85305 -32.10713 -30.78460 -29.85752 -28.34248 -26.87542 -25.07201 -24.01153 -22.98088 -22.09252 -21.51605 -20.87390 -18.66179 -18.44371 -17.46402 -16.59915 -16.43551 -16.28780 -15.58168 -15.46501 -15.00522 -14.49005 -14.29400 -14.08893 -13.87885 -13.31469 -13.18830 -13.16354 -12.96845 -12.64166 -12.39297 -12.30429 -11.77937 -11.74495 -11.46575 -11.01071 -10.99782 -10.97500 -10.77238 -10.47734 -10.26922 -10.05382 -9.96852 -9.69639 -9.46022 -9.27498 -8.98174 -8.72342 -8.30914 -7.89910 -5.98294 -4.03525 0.34226 1.09411 2.22486 2.40193 3.30093 3.38486 3.42153 3.60740 3.98556 4.38707 4.44989 4.58691 4.64413 4.76300 4.79293 4.88161 4.96214 5.05747 5.28247 5.32122 5.34358 5.54805 5.56694 5.64535 5.77284 5.81595 5.98598 6.06160 6.09897 6.15915 6.23810 6.38957 6.54639 6.57346 6.80256 7.02235 7.09101 7.33710 7.37163 7.52881 7.57636 7.73645 7.79379 8.02042 8.13318 8.46810 9.00269 9.61188 11.07925 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.003137 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.197844 B = 8923.359191 C = 9913.488737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.334 6.334 3 C 0.527 3.473 4 O -0.504 6.504 5 C 0.076 3.924 6 C -0.103 4.103 7 C -0.066 4.066 8 C -0.081 4.081 9 C 0.088 3.912 10 N -0.531 5.531 11 C 0.052 3.948 12 C -0.103 4.103 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.107 4.107 23 C 0.061 3.939 24 C 0.105 3.895 25 N -0.434 5.434 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.259 0.741 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 4.686 14.738 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.249 6.249 3 C 0.371 3.629 4 O -0.391 6.391 5 C -0.060 4.060 6 C -0.123 4.123 7 C -0.092 4.092 8 C -0.084 4.084 9 C -0.041 4.041 10 N -0.256 5.256 11 C -0.075 4.075 12 C -0.142 4.142 13 C 0.029 3.971 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.066 4.066 24 C -0.056 4.056 25 N -0.144 5.144 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.111 0.889 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.934 4.387 14.416 19.222 hybrid contribution 0.817 0.157 -0.659 1.061 sum -11.116 4.544 13.758 18.262 Atomic orbital electron populations 1.23345 0.76184 1.03975 1.02536 1.86699 1.23122 1.31767 1.83289 1.20864 0.87985 0.81677 0.72398 1.90835 1.66001 1.36202 1.46074 1.19916 0.90545 0.90403 1.05143 1.22058 0.95323 0.98025 0.96915 1.21488 0.92788 0.99097 0.95830 1.21215 0.97672 0.94011 0.95503 1.21055 0.89034 1.01923 0.92059 1.62078 1.15157 1.36676 1.11657 1.22404 0.98926 0.88087 0.98102 1.21658 0.98968 1.03148 0.90393 1.18692 0.92292 0.91523 0.94597 1.21230 1.40072 0.99968 0.93560 0.92710 1.24970 0.95187 0.95306 0.98575 1.69880 1.44165 1.04372 1.34638 0.86586 0.78166 0.78042 0.85492 1.19845 1.21135 1.21080 1.21688 0.98972 1.01340 0.92444 1.22142 0.86125 0.98890 0.99436 1.22826 0.88994 0.98117 0.95681 1.67634 1.08193 1.29968 1.08651 0.91730 0.87801 0.91844 0.83364 0.83468 0.89721 0.93553 0.95577 0.92487 0.93896 0.88870 0.96104 0.93134 0.92448 0.93017 0.92239 0.95489 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.33 -4.25 10.38 -40.43 -0.42 -4.67 16 3 C 0.53 7.24 7.95 34.76 0.28 7.52 16 4 O -0.50 -7.36 16.11 -19.21 -0.31 -7.67 16 5 C 0.08 1.04 6.75 -83.02 -0.56 0.48 16 6 C -0.10 -1.21 9.63 -39.04 -0.38 -1.58 16 7 C -0.07 -0.73 9.85 -39.31 -0.39 -1.12 16 8 C -0.08 -0.99 4.90 -104.35 -0.51 -1.50 16 9 C 0.09 1.07 5.14 -4.98 -0.03 1.04 16 10 N -0.53 -8.51 4.65 -236.11 -1.10 -9.61 16 11 C 0.05 0.96 5.16 -3.83 -0.02 0.94 16 12 C -0.10 -2.38 5.12 -26.65 -0.14 -2.52 16 13 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 14 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 17 N -0.89 -25.15 11.37 55.43 0.63 -24.52 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -2.13 5.32 -26.65 -0.14 -2.27 16 23 C 0.06 1.00 5.46 -3.83 -0.02 0.98 16 24 C 0.10 1.36 9.06 -17.56 -0.16 1.20 16 25 N -0.43 -6.23 10.12 -9.81 -0.10 -6.33 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.15 1.51 7.64 -52.48 -0.40 1.11 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 32 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.00 5.75 -51.93 -0.30 0.70 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 2.42 6.18 -51.93 -0.32 2.10 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.82 8.01 -51.93 -0.42 0.41 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.16 1.90 7.95 -52.48 -0.42 1.49 16 LS Contribution 353.35 15.07 5.32 5.32 Total: -1.00 -30.66 353.35 -9.03 -39.69 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.45 Total: -1.34 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.58 Total: -7.07 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.57 Total: -40.45 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.73 Total: -12.33 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.66 -9.03 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237446913.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.384 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds