Wall clock time and date at job start Tue Mar 31 2020 08:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34682 * 116.99919 * 2 1 4 4 O 1.21433 * 119.99761 * 359.97438 * 3 2 1 5 5 C 1.48065 * 120.00131 * 180.26979 * 3 2 1 6 6 C 1.39345 * 119.72995 * 179.71944 * 5 3 2 7 7 C 1.38587 * 119.06116 * 179.97438 * 6 5 3 8 8 C 1.38624 * 118.48951 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.32410 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47038 * 90.00024 * 9 8 7 11 11 C 1.46848 * 111.00201 * 66.04412 * 10 9 8 12 12 C 1.53034 * 109.52246 * 185.83584 * 11 10 9 13 13 C 1.53113 * 109.28326 * 300.82497 * 12 11 10 14 14 C 1.53123 * 109.16065 * 57.65320 * 13 12 11 15 15 H 1.08997 * 109.50118 * 62.28644 * 14 13 12 16 16 C 1.50697 * 109.50525 * 182.40620 * 14 13 12 17 17 H 1.07997 * 120.00298 * 119.99948 * 16 14 13 18 18 C 1.37881 * 120.00068 * 300.00285 * 16 14 13 19 19 N 1.31518 * 119.99550 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00037 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47291 * 89.99939 * 20 18 16 22 22 H 1.48508 * 109.46959 * 209.99803 * 20 18 16 23 23 H 1.48501 * 109.47404 * 329.99561 * 20 18 16 24 24 C 1.46844 * 110.99858 * 190.25638 * 10 9 8 25 25 C 1.38592 * 119.35566 * 359.97438 * 8 7 6 26 26 N 1.31498 * 120.90526 * 359.73807 * 25 8 7 27 27 H 1.09004 * 109.46770 * 60.00922 * 1 2 3 28 28 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47630 * 300.00518 * 1 2 3 30 30 H 1.08007 * 120.46987 * 0.02562 * 6 5 3 31 31 H 1.08005 * 120.75879 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47257 * 209.99528 * 9 8 7 33 33 H 1.08994 * 109.46899 * 330.00057 * 9 8 7 34 34 H 1.08992 * 109.46510 * 305.85840 * 11 10 9 35 35 H 1.09003 * 109.45679 * 65.82736 * 11 10 9 36 36 H 1.09006 * 109.50267 * 60.77072 * 12 11 10 37 37 H 1.09000 * 109.50121 * 180.88207 * 12 11 10 38 38 H 1.08999 * 109.52738 * 177.55477 * 13 12 11 39 39 H 1.09003 * 109.52445 * 297.68419 * 13 12 11 40 40 H 0.97007 * 119.99617 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.46516 * 294.17829 * 24 10 9 42 42 H 1.09008 * 109.46362 * 54.14322 * 24 10 9 43 43 H 1.08003 * 119.54065 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2184 -0.0005 5 6 3.5421 1.2776 -0.0060 6 6 4.1687 2.5221 -0.0119 7 6 5.5534 2.5786 -0.0170 8 6 6.2637 1.3881 -0.0165 9 6 7.7707 1.4013 -0.0214 10 7 8.2647 1.4087 1.3621 11 6 7.9284 0.1544 2.0478 12 6 8.3276 0.2544 3.5217 13 6 9.8314 0.5249 3.6211 14 6 10.1622 1.8107 2.8582 15 1 9.6427 2.6509 3.3187 16 6 11.6490 2.0528 2.9010 17 1 12.2149 2.1018 1.9825 18 6 12.2870 2.2116 4.1130 19 7 11.5978 2.1523 5.2316 20 14 14.1301 2.5110 4.1661 21 1 14.3961 3.9711 4.1163 22 1 14.6868 1.9490 5.4230 23 1 14.7726 1.8507 3.0015 24 6 9.7099 1.6655 1.4034 25 6 5.5745 0.1858 -0.0105 26 7 4.2598 0.1609 -0.0001 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5836 3.4300 -0.0117 31 1 6.0675 3.5284 -0.0220 32 1 8.1401 0.5133 -0.5342 33 1 8.1245 2.2932 -0.5383 34 1 6.8558 -0.0240 1.9733 35 1 8.4669 -0.6703 1.5809 36 1 7.7792 1.0702 3.9928 37 1 8.0922 -0.6824 4.0268 38 1 10.1125 0.6400 4.6679 39 1 10.3812 -0.3097 3.1860 40 1 12.0467 2.2637 6.0843 41 1 10.2401 0.8337 0.9395 42 1 9.9312 2.5847 0.8609 43 1 6.1250 -0.7435 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237449883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:02 Heat of formation + Delta-G solvation = -49.487679 kcal Electronic energy + Delta-G solvation = -24366.330082 eV Core-core repulsion = 20797.376123 eV Total energy + Delta-G solvation = -3568.953959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.03991 -39.93345 -38.17978 -36.69813 -34.50176 -32.85527 -32.12324 -31.13235 -29.86198 -28.32026 -26.50759 -25.06653 -24.08934 -23.39017 -21.93864 -21.52076 -20.82251 -18.68552 -18.47879 -17.50306 -16.64216 -16.48729 -16.32180 -15.57289 -15.32484 -14.99649 -14.58082 -14.20361 -14.07045 -13.85361 -13.40798 -13.28954 -13.21107 -13.00966 -12.64480 -12.39306 -12.32069 -11.89809 -11.73847 -11.42690 -11.04307 -11.02692 -10.98422 -10.73731 -10.70524 -10.18205 -10.04769 -9.89721 -9.73756 -9.52760 -9.29965 -9.06310 -8.75278 -8.34015 -7.81535 -6.00705 -4.07310 0.31585 1.06588 2.19420 2.35886 3.28603 3.35737 3.38000 3.58401 3.94249 4.35126 4.50116 4.58262 4.62641 4.75309 4.78426 4.83689 4.91687 5.04980 5.24304 5.29489 5.36593 5.53293 5.56653 5.69765 5.74189 5.78152 6.00315 6.03435 6.11630 6.18744 6.32283 6.36326 6.43635 6.65436 6.69454 6.88804 7.15719 7.29592 7.32243 7.53329 7.66235 7.69337 7.73543 8.03224 8.13544 8.43195 8.96706 9.57314 11.05193 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.034728 B = 0.002625 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.073415 B =10664.725889 C =10845.954163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.335 6.335 3 C 0.527 3.473 4 O -0.503 6.503 5 C 0.074 3.926 6 C -0.101 4.101 7 C -0.065 4.065 8 C -0.080 4.080 9 C 0.087 3.913 10 N -0.533 5.533 11 C 0.058 3.942 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.034 0.966 16 C -0.516 4.516 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 C 0.101 3.899 26 N -0.435 5.435 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.260 0.740 41 H 0.022 0.978 42 H 0.061 0.939 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.357 -3.590 -11.213 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.370 3.630 4 O -0.390 6.390 5 C -0.062 4.062 6 C -0.122 4.122 7 C -0.091 4.091 8 C -0.082 4.082 9 C -0.041 4.041 10 N -0.257 5.257 11 C -0.070 4.070 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.052 0.948 16 C -0.555 4.555 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.058 4.058 25 C -0.060 4.060 26 N -0.146 5.146 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.281 -3.703 -10.755 20.688 hybrid contribution 1.644 0.301 -0.276 1.694 sum -15.637 -3.402 -11.031 19.436 Atomic orbital electron populations 1.23342 0.76190 1.03946 1.02573 1.86691 1.23118 1.31820 1.83359 1.20868 0.87985 0.81664 0.72434 1.90843 1.65990 1.36189 1.45994 1.19897 0.90489 0.90406 1.05409 1.22078 0.95349 0.98033 0.96700 1.21543 0.92754 0.99289 0.95552 1.21289 0.97869 0.93955 0.95125 1.21071 0.88654 1.02179 0.92202 1.62077 1.17383 1.34586 1.11692 1.22149 0.98940 0.89634 0.96299 1.21665 1.00088 1.00120 0.93595 1.21665 0.90571 0.98104 1.04597 1.18664 0.95108 0.94470 0.88090 0.94751 1.21126 0.92800 1.49148 0.92384 0.92807 1.24938 0.97986 0.95172 0.95743 1.69893 1.35363 1.49967 0.97403 0.86624 0.85739 0.78380 0.77404 1.20702 1.21273 1.20017 1.22360 0.83069 0.98740 1.01662 1.22786 0.88992 0.98034 0.96219 1.67611 1.08175 1.30021 1.08761 0.91824 0.87823 0.91733 0.83329 0.83292 0.93625 0.89421 0.92299 0.95519 0.92164 0.93426 0.89054 0.95081 0.93014 0.95956 0.92038 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.34 -4.01 10.38 -40.44 -0.42 -4.43 16 3 C 0.53 6.92 7.95 34.76 0.28 7.20 16 4 O -0.50 -7.12 16.11 -19.21 -0.31 -7.43 16 5 C 0.07 0.97 6.75 -83.03 -0.56 0.41 16 6 C -0.10 -1.17 9.63 -39.04 -0.38 -1.54 16 7 C -0.07 -0.73 9.85 -39.31 -0.39 -1.12 16 8 C -0.08 -0.96 4.91 -104.35 -0.51 -1.47 16 9 C 0.09 1.12 5.14 -4.97 -0.03 1.09 16 10 N -0.53 -8.89 4.65 -236.12 -1.10 -9.98 16 11 C 0.06 0.95 5.17 -3.84 -0.02 0.93 16 12 C -0.12 -2.22 6.09 -26.66 -0.16 -2.38 16 13 C -0.11 -2.55 5.02 -26.61 -0.13 -2.68 16 14 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.52 -13.67 8.56 -34.44 -0.29 -13.97 16 17 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.88 11.35 55.43 0.63 -24.25 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.07 1.33 4.68 -3.84 -0.02 1.32 16 25 C 0.10 1.22 9.06 -17.56 -0.16 1.06 16 26 N -0.43 -5.86 10.12 -9.81 -0.10 -5.96 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.15 1.49 7.64 -52.48 -0.40 1.09 16 31 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.09 1.03 7.93 -51.93 -0.41 0.61 16 34 H 0.06 0.88 5.76 -51.93 -0.30 0.58 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.17 8.01 -51.92 -0.42 0.75 16 43 H 0.16 1.69 7.95 -52.48 -0.42 1.27 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -30.07 353.31 -9.05 -39.12 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.45 Total: -1.09 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.61 Total: -7.10 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.57 Total: -40.19 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.73 Total: -11.86 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.07 -9.05 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237449883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.368 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds