Wall clock time and date at job start Tue Mar 31 2020 08:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87524 * 2 1 4 4 C 1.54331 * 109.88083 * 238.98335 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.23303 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 110.01238 * 121.10037 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.47488 * 17 2 1 19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2 20 20 C 1.47711 * 120.00288 * 180.02562 * 18 17 2 21 21 C 1.41501 * 126.51809 * 179.71047 * 20 18 17 22 22 C 1.35366 * 105.50147 * 179.90075 * 21 20 18 23 23 C 1.50699 * 126.38643 * 180.08654 * 22 21 20 24 24 C 1.52990 * 117.49981 * 213.92066 * 23 22 21 25 25 C 1.52992 * 117.50159 * 145.29449 * 23 22 21 26 26 N 1.35036 * 107.22963 * 0.36003 * 22 21 20 27 27 H 0.96998 * 124.88281 * 179.76418 * 26 22 21 28 28 N 1.28469 * 110.23065 * 359.76041 * 26 22 21 29 29 H 1.08996 * 109.46835 * 181.01758 * 1 2 3 30 30 H 1.08999 * 109.46527 * 301.01518 * 1 2 3 31 31 H 1.08998 * 109.46762 * 61.01443 * 1 2 3 32 32 H 1.09007 * 110.71733 * 99.86945 * 4 2 1 33 33 H 1.08999 * 110.71890 * 336.60416 * 4 2 1 34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 38 38 H 1.07998 * 127.24662 * 0.02562 * 21 20 18 39 39 H 1.09002 * 115.54530 * 359.62882 * 23 22 21 40 40 H 1.09001 * 117.50159 * 359.97438 * 24 23 22 41 41 H 1.09009 * 117.50191 * 145.02205 * 24 23 22 42 42 H 1.08995 * 117.50528 * 214.98361 * 25 23 22 43 43 H 1.09004 * 117.49898 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2438 5 6 3.2900 -1.5101 -0.6955 6 1 4.1665 -0.8631 -0.6650 7 7 3.5570 -2.7145 -1.4857 8 6 4.8214 -3.2387 -1.5288 9 1 5.6218 -2.7640 -0.9806 10 6 5.0756 -4.3766 -2.2821 11 7 4.1004 -4.9548 -2.9506 12 14 6.8020 -5.0872 -2.3471 13 1 7.7105 -4.2574 -1.5156 14 1 6.7849 -6.4775 -1.8259 15 1 7.2831 -5.0910 -3.7521 16 6 2.8196 -1.8770 0.7341 17 7 2.0332 -0.7135 1.1828 18 6 1.8113 -0.3628 2.4651 19 8 1.1440 0.6211 2.7194 20 6 2.3800 -1.1730 3.5615 21 6 2.2400 -0.9297 4.9484 22 6 2.9227 -1.9252 5.5610 23 6 3.0778 -2.1197 7.0473 24 6 4.3979 -2.7084 7.5488 25 6 3.1248 -3.5566 7.5707 26 7 3.4440 -2.7080 4.5920 27 1 3.9857 -3.4973 4.7480 28 7 3.1191 -2.2569 3.4338 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3632 0.5295 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 2.3503 -0.0432 -2.0213 33 1 1.3061 -1.4456 -1.6187 34 1 2.8383 -3.1407 -1.9784 35 1 4.2780 -5.7501 -3.4767 36 1 2.1956 -2.7704 0.7105 37 1 3.6779 -2.0299 1.3883 38 1 1.7002 -0.1213 5.4190 39 1 2.5900 -1.3720 7.6727 40 1 5.1542 -2.9554 6.8036 41 1 4.7790 -2.3480 8.5044 42 1 2.6683 -3.7543 8.5404 43 1 3.0440 -4.3613 6.8398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989474147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:51 Heat of formation + Delta-G solvation = 82.841936 kcal Electronic energy + Delta-G solvation = -24793.429255 eV Core-core repulsion = 21262.506290 eV Total energy + Delta-G solvation = -3530.922965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.75810 -39.64125 -37.55510 -37.18086 -34.14874 -32.29346 -31.42005 -31.23990 -30.24598 -28.34091 -25.38130 -24.52243 -23.73571 -23.36572 -22.84887 -21.17547 -20.83296 -20.16653 -18.33511 -17.93153 -17.28444 -16.59806 -15.98955 -15.79396 -15.58074 -14.97950 -14.31851 -14.30913 -13.83602 -13.63618 -13.54249 -13.23494 -12.99573 -12.55131 -12.47723 -12.19018 -12.07487 -12.05006 -11.62298 -11.43189 -11.17076 -11.04893 -10.97117 -10.84651 -10.62601 -10.43029 -10.21208 -9.96011 -9.81100 -9.71870 -9.38460 -8.98384 -8.87443 -8.23078 -7.04721 -5.82773 -3.12635 1.64179 1.96719 2.74382 3.29282 3.39356 3.45609 3.47475 3.49498 3.64217 4.07259 4.33424 4.44382 4.50291 4.55265 4.76635 4.97336 5.15893 5.20359 5.28841 5.32849 5.40274 5.52704 5.55726 5.58893 5.59275 5.66322 5.80869 5.84540 5.85034 5.93420 6.19287 6.23663 6.27657 6.38855 6.43837 6.57018 6.65281 6.75810 6.93976 6.97729 7.66559 7.80519 7.92418 8.34850 8.46341 9.46930 10.01617 10.36892 11.39542 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004341 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.495821 B = 6448.567078 C = 8677.693359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.138 4.138 5 C 0.170 3.830 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.243 4.243 9 H 0.072 0.928 10 C -0.010 4.010 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 C 0.078 3.922 17 N -0.595 5.595 18 C 0.613 3.387 19 O -0.547 6.547 20 C -0.005 4.005 21 C -0.172 4.172 22 C 0.040 3.960 23 C -0.084 4.084 24 C -0.175 4.175 25 C -0.174 4.174 26 N -0.382 5.382 27 H 0.442 0.558 28 N -0.237 5.237 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 5.823 18.597 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.177 4.177 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.351 5.351 8 C -0.374 4.374 9 H 0.090 0.910 10 C -0.206 4.206 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.218 1.218 16 C -0.048 4.048 17 N -0.328 5.328 18 C 0.400 3.600 19 O -0.424 6.424 20 C -0.166 4.166 21 C -0.200 4.200 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.212 4.212 25 C -0.212 4.212 26 N -0.097 5.097 27 H 0.286 0.714 28 N -0.072 5.072 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.162 5.651 17.939 19.072 hybrid contribution 0.670 -0.715 0.492 1.097 sum -2.491 4.936 18.431 19.242 Atomic orbital electron populations 1.22132 0.95093 1.02245 1.02399 1.21542 0.94270 0.96102 0.84542 0.90871 1.23059 0.99285 0.99677 0.95666 1.21339 0.94574 0.89435 0.88883 0.91577 1.42307 1.09484 1.27908 1.55355 1.19311 0.86771 1.06954 1.24376 0.90957 1.24743 0.97534 0.98408 0.99911 1.69666 1.30676 1.22459 1.35023 0.86132 0.84033 0.78774 0.77315 1.20520 1.21866 1.21801 1.23607 0.95179 0.86927 0.99072 1.48449 1.51147 1.29129 1.04071 1.16521 0.79897 0.83231 0.80390 1.90737 1.40971 1.27305 1.83356 1.21909 1.03720 0.96458 0.94480 1.21372 1.05483 1.01435 0.91686 1.20431 1.02111 0.95052 0.90920 1.20499 1.02688 0.98422 0.88815 1.23099 0.90938 1.03670 1.03506 1.23099 1.01510 0.93201 1.03381 1.43379 1.39768 1.23821 1.02684 0.71379 1.73930 1.14880 1.12259 1.06170 0.92548 0.91554 0.91831 0.90327 0.90404 0.77894 0.93460 0.91559 0.89557 0.82120 0.85007 0.88702 0.87610 0.87617 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.10 37.16 0.34 -1.98 16 2 C 0.14 2.20 3.45 -66.95 -0.23 1.96 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.14 -2.26 6.12 -24.90 -0.15 -2.42 16 5 C 0.17 3.35 3.71 -65.78 -0.24 3.10 16 6 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 7 N -0.71 -17.23 5.24 -51.35 -0.27 -17.50 16 8 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 11 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 12 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 C 0.08 1.46 5.85 -2.53 -0.01 1.44 16 17 N -0.60 -10.39 3.07 -164.16 -0.50 -10.90 16 18 C 0.61 11.01 7.65 -12.39 -0.09 10.92 16 19 O -0.55 -10.62 15.97 5.30 0.08 -10.53 16 20 C 0.00 -0.08 6.97 -82.76 -0.58 -0.65 16 21 C -0.17 -2.30 10.73 -39.36 -0.42 -2.72 16 22 C 0.04 0.44 6.64 -82.21 -0.55 -0.11 16 23 C -0.08 -0.62 6.26 -91.78 -0.57 -1.20 16 24 C -0.17 -1.03 10.22 -26.74 -0.27 -1.31 16 25 C -0.17 -1.03 10.23 -26.74 -0.27 -1.31 16 26 N -0.38 -4.49 6.80 33.50 0.23 -4.26 16 27 H 0.44 3.88 8.96 -190.44 -1.71 2.17 16 28 N -0.24 -3.68 9.35 33.42 0.31 -3.37 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.03 6.90 -51.93 -0.36 0.67 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.08 1.29 7.71 -51.93 -0.40 0.89 16 34 H 0.39 9.94 7.76 -40.82 -0.32 9.63 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.68 6.20 -51.93 -0.32 1.35 16 38 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -32.18 358.01 -10.08 -42.26 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.72 Total: 10.04 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -3.31 Total: -1.32 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.49 Total: -62.70 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.18 -10.08 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.105 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds