Wall clock time and date at job start Tue Mar 31 2020 08:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87524 * 2 1 4 4 C 1.54331 * 109.88083 * 238.98335 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.23303 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 110.01238 * 121.10037 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.47488 * 17 2 1 19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2 20 20 C 1.47711 * 120.00288 * 180.02562 * 18 17 2 21 21 C 1.41501 * 126.51809 * 179.71047 * 20 18 17 22 22 C 1.35366 * 105.50147 * 179.90075 * 21 20 18 23 23 C 1.50699 * 126.38643 * 180.08654 * 22 21 20 24 24 C 1.52990 * 117.49981 * 213.92066 * 23 22 21 25 25 C 1.52992 * 117.50159 * 145.29449 * 23 22 21 26 26 N 1.35036 * 107.22963 * 0.36003 * 22 21 20 27 27 H 0.96998 * 124.88281 * 179.76418 * 26 22 21 28 28 N 1.28469 * 110.23065 * 359.76041 * 26 22 21 29 29 H 1.08996 * 109.46835 * 181.01758 * 1 2 3 30 30 H 1.08999 * 109.46527 * 301.01518 * 1 2 3 31 31 H 1.08998 * 109.46762 * 61.01443 * 1 2 3 32 32 H 1.09007 * 110.71733 * 99.86945 * 4 2 1 33 33 H 1.08999 * 110.71890 * 336.60416 * 4 2 1 34 34 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 37 37 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 38 38 H 1.07998 * 127.24662 * 0.02562 * 21 20 18 39 39 H 1.09002 * 115.54530 * 359.62882 * 23 22 21 40 40 H 1.09001 * 117.50159 * 359.97438 * 24 23 22 41 41 H 1.09009 * 117.50191 * 145.02205 * 24 23 22 42 42 H 1.08995 * 117.50528 * 214.98361 * 25 23 22 43 43 H 1.09004 * 117.49898 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2438 5 6 3.2900 -1.5101 -0.6955 6 1 4.1665 -0.8631 -0.6650 7 7 3.5570 -2.7145 -1.4857 8 6 4.8214 -3.2387 -1.5288 9 1 5.6218 -2.7640 -0.9806 10 6 5.0756 -4.3766 -2.2821 11 7 4.1004 -4.9548 -2.9506 12 14 6.8020 -5.0872 -2.3471 13 1 7.7105 -4.2574 -1.5156 14 1 6.7849 -6.4775 -1.8259 15 1 7.2831 -5.0910 -3.7521 16 6 2.8196 -1.8770 0.7341 17 7 2.0332 -0.7135 1.1828 18 6 1.8113 -0.3628 2.4651 19 8 1.1440 0.6211 2.7194 20 6 2.3800 -1.1730 3.5615 21 6 2.2400 -0.9297 4.9484 22 6 2.9227 -1.9252 5.5610 23 6 3.0778 -2.1197 7.0473 24 6 4.3979 -2.7084 7.5488 25 6 3.1248 -3.5566 7.5707 26 7 3.4440 -2.7080 4.5920 27 1 3.9857 -3.4973 4.7480 28 7 3.1191 -2.2569 3.4338 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3632 0.5295 0.8808 31 1 -0.3633 0.4980 -0.8989 32 1 2.3503 -0.0432 -2.0213 33 1 1.3061 -1.4456 -1.6187 34 1 2.8383 -3.1407 -1.9784 35 1 4.2780 -5.7501 -3.4767 36 1 2.1956 -2.7704 0.7105 37 1 3.6779 -2.0299 1.3883 38 1 1.7002 -0.1213 5.4190 39 1 2.5900 -1.3720 7.6727 40 1 5.1542 -2.9554 6.8036 41 1 4.7790 -2.3480 8.5044 42 1 2.6683 -3.7543 8.5404 43 1 3.0440 -4.3613 6.8398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989474147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:50 Heat of formation + Delta-G solvation = 62.429956 kcal Electronic energy + Delta-G solvation = -24794.314385 eV Core-core repulsion = 21262.506290 eV Total energy + Delta-G solvation = -3531.808095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.79334 -41.04690 -38.71908 -38.08008 -35.99423 -33.55876 -33.19244 -32.40299 -31.31211 -30.06521 -26.77146 -26.05609 -25.27013 -24.32570 -23.28725 -22.33630 -21.99726 -21.66919 -19.68276 -19.25992 -18.82838 -17.75555 -17.40000 -16.77511 -16.66707 -16.41576 -15.91168 -15.45354 -15.23672 -15.08749 -14.83981 -14.54888 -14.29092 -14.16305 -13.70731 -13.44154 -13.16925 -13.05017 -12.89869 -12.79931 -12.48061 -12.41722 -12.12612 -12.07104 -12.03485 -11.87463 -11.62360 -11.48896 -11.40790 -11.19187 -10.93332 -10.49300 -9.78909 -9.67115 -9.04653 -7.94548 -5.24247 0.47428 0.98592 1.48562 1.49247 1.58974 1.72001 2.07542 2.30475 2.56543 2.99333 3.20868 3.37070 3.44280 3.63406 3.77126 3.86563 3.99593 4.02469 4.08854 4.15706 4.19636 4.32926 4.47882 4.51407 4.56526 4.74194 4.74716 4.76586 4.85049 4.93538 4.99094 5.09253 5.13295 5.16730 5.17977 5.22542 5.28728 5.37873 5.46998 5.54197 6.03357 6.26433 6.44391 6.76357 7.10196 7.34073 8.04837 8.30457 9.28653 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004341 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.495821 B = 6448.567078 C = 8677.693359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.082 0.918 4 C -0.124 4.124 5 C 0.164 3.836 6 H 0.064 0.936 7 N -0.720 5.720 8 C -0.242 4.242 9 H 0.076 0.924 10 C -0.068 4.068 11 N -0.966 5.966 12 Si 0.969 3.031 13 H -0.267 1.267 14 H -0.294 1.294 15 H -0.294 1.294 16 C 0.098 3.902 17 N -0.597 5.597 18 C 0.609 3.391 19 O -0.566 6.566 20 C -0.033 4.033 21 C -0.191 4.191 22 C 0.064 3.936 23 C -0.101 4.101 24 C -0.166 4.166 25 C -0.166 4.166 26 N -0.371 5.371 27 H 0.454 0.546 28 N -0.267 5.267 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 6.146 20.424 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.082 0.918 7 N -0.359 5.359 8 C -0.373 4.373 9 H 0.094 0.906 10 C -0.261 4.261 11 N -0.617 5.617 12 Si 0.799 3.201 13 H -0.191 1.191 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.028 4.028 17 N -0.329 5.329 18 C 0.397 3.603 19 O -0.444 6.444 20 C -0.192 4.192 21 C -0.219 4.219 22 C -0.062 4.062 23 C -0.120 4.120 24 C -0.203 4.203 25 C -0.204 4.204 26 N -0.087 5.087 27 H 0.301 0.699 28 N -0.103 5.103 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.188 0.812 39 H 0.166 0.834 40 H 0.111 0.889 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.477 6.007 19.791 20.830 hybrid contribution 0.453 -0.791 0.047 0.912 sum -2.024 5.216 19.838 20.612 Atomic orbital electron populations 1.22058 0.93831 1.01953 1.03156 1.21684 0.95277 0.96183 0.83541 0.89975 1.22962 0.97482 0.99539 0.96310 1.21474 0.96000 0.88177 0.89033 0.91785 1.42401 1.08444 1.29121 1.55961 1.19645 0.87817 1.06631 1.23232 0.90593 1.25489 1.01004 0.99208 1.00372 1.69809 1.32554 1.22970 1.36338 0.85139 0.80139 0.77816 0.77040 1.19133 1.22132 1.22096 1.23162 0.94674 0.86754 0.98218 1.48467 1.51071 1.28750 1.04623 1.16813 0.79556 0.83176 0.80737 1.90708 1.41892 1.28187 1.83654 1.21864 1.05072 0.97178 0.95125 1.21580 1.06783 1.02820 0.90704 1.20879 0.99617 0.93250 0.92412 1.20678 1.04749 1.00223 0.86395 1.23204 0.90362 1.02693 1.04055 1.23201 1.01321 0.91897 1.03939 1.43421 1.39191 1.24008 1.02095 0.69909 1.73826 1.15822 1.12659 1.08017 0.93257 0.92681 0.89200 0.88518 0.90557 0.79010 0.93973 0.93370 0.90280 0.81231 0.83385 0.88945 0.85838 0.85860 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.10 71.98 0.66 -3.58 16 2 C 0.14 4.19 3.45 45.35 0.16 4.35 16 3 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.12 -3.97 6.12 31.78 0.19 -3.78 16 5 C 0.16 6.45 3.71 46.38 0.17 6.62 16 6 H 0.06 2.56 8.09 -2.39 -0.02 2.54 16 7 N -0.72 -35.23 5.24 -316.38 -1.66 -36.89 16 8 C -0.24 -13.02 9.96 84.03 0.84 -12.18 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 11 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 12 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 13 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 16 C 0.10 3.73 5.85 86.86 0.51 4.24 16 17 N -0.60 -20.94 3.07 -791.56 -2.43 -23.37 16 18 C 0.61 22.15 7.65 86.75 0.66 22.82 16 19 O -0.57 -22.13 15.97 -3.94 -0.06 -22.20 16 20 C -0.03 -1.08 6.97 42.46 0.30 -0.78 16 21 C -0.19 -5.03 10.73 22.41 0.24 -4.79 16 22 C 0.06 1.32 6.64 41.40 0.28 1.60 16 23 C -0.10 -1.23 6.26 -11.55 -0.07 -1.30 16 24 C -0.17 -1.47 10.22 30.59 0.31 -1.16 16 25 C -0.17 -1.49 10.23 30.59 0.31 -1.17 16 26 N -0.37 -8.43 6.80 -47.93 -0.33 -8.76 16 27 H 0.45 7.48 8.96 -219.99 -1.97 5.51 16 28 N -0.27 -8.33 9.35 -48.17 -0.45 -8.78 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.67 6.90 -2.39 -0.02 1.66 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.08 2.49 7.71 -2.39 -0.02 2.47 16 34 H 0.38 19.74 7.76 -92.71 -0.72 19.02 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.08 3.13 6.20 -2.39 -0.01 3.12 16 38 H 0.17 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -69.49 358.01 0.75 -68.74 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -1.65 Total: 34.06 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.02 Total: 7.53 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -4.58 Total: -135.24 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.49 0.75 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989474147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.171 kcal (2) G-P(sol) polarization free energy of solvation -69.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds