Wall clock time and date at job start Tue Mar 31 2020 08:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46602 * 2 1 4 4 C 1.50703 * 109.47075 * 240.00391 * 2 1 3 5 5 O 1.21284 * 119.99825 * 239.99652 * 4 2 1 6 6 N 1.34772 * 119.99876 * 59.99597 * 4 2 1 7 7 C 1.46505 * 119.99868 * 179.97438 * 6 4 2 8 8 H 1.09002 * 109.49502 * 325.06812 * 7 6 4 9 9 C 1.53036 * 109.49593 * 205.00246 * 7 6 4 10 10 C 1.53045 * 109.53497 * 178.65114 * 9 7 6 11 11 C 1.53198 * 109.31342 * 61.36427 * 10 9 7 12 12 N 1.46925 * 108.77376 * 305.36486 * 11 10 9 13 13 C 1.36931 * 120.62846 * 233.58067 * 12 11 10 14 14 H 1.08008 * 119.99843 * 152.40033 * 13 12 11 15 15 C 1.38812 * 120.00461 * 332.40196 * 13 12 11 16 16 N 1.31624 * 119.99771 * 334.91471 * 15 13 12 17 17 Si 1.86796 * 120.00026 * 154.90837 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00433 * 17 15 13 19 19 H 1.48498 * 109.47658 * 330.00491 * 17 15 13 20 20 H 1.48500 * 109.47270 * 210.00244 * 17 15 13 21 21 C 1.46931 * 118.73724 * 53.86046 * 12 11 10 22 22 C 1.50701 * 109.47381 * 120.00306 * 2 1 3 23 23 C 1.38592 * 120.79928 * 59.72162 * 22 2 1 24 24 N 1.32331 * 119.10465 * 179.72392 * 23 22 2 25 25 C 1.31795 * 120.81725 * 0.56315 * 24 23 22 26 26 N 1.31800 * 121.75530 * 359.70755 * 25 24 23 27 27 C 1.32335 * 120.81301 * 0.02562 * 26 25 24 28 28 H 1.08996 * 109.47268 * 299.99407 * 1 2 3 29 29 H 1.08993 * 109.47301 * 60.00280 * 1 2 3 30 30 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00111 * 0.02562 * 6 4 2 32 32 H 1.08996 * 109.46347 * 58.63279 * 9 7 6 33 33 H 1.08999 * 109.46503 * 298.67047 * 9 7 6 34 34 H 1.08998 * 109.50167 * 301.41524 * 10 9 7 35 35 H 1.09005 * 109.49628 * 181.31186 * 10 9 7 36 36 H 1.08999 * 109.58512 * 185.57589 * 11 10 9 37 37 H 1.09004 * 109.58311 * 65.14992 * 11 10 9 38 38 H 0.96996 * 120.00175 * 354.25433 * 16 15 13 39 39 H 1.09000 * 109.58814 * 65.92708 * 21 12 11 40 40 H 1.09000 * 109.58530 * 186.34896 * 21 12 11 41 41 H 1.08001 * 120.44798 * 359.97438 * 23 22 2 42 42 H 1.07999 * 119.12424 * 179.73591 * 25 24 23 43 43 H 1.07995 * 120.44490 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1955 -0.9401 -3.6508 8 1 3.1944 -1.3330 -3.4614 9 6 2.2469 0.0430 -4.8225 10 6 2.7892 -0.6686 -6.0642 11 6 1.8501 -1.8194 -6.4394 12 7 1.6806 -2.6919 -5.2695 13 6 1.9192 -4.0371 -5.3621 14 1 2.2308 -4.5917 -4.4892 15 6 1.7606 -4.6881 -6.5778 16 7 0.9472 -4.1947 -7.4874 17 14 2.7018 -6.2643 -6.9229 18 1 1.8965 -7.4295 -6.4766 19 1 3.9911 -6.2425 -6.1864 20 1 2.9660 -6.3742 -8.3801 21 6 1.2442 -2.0946 -4.0000 22 6 2.0324 -0.7105 1.2304 23 6 1.7031 -2.0354 1.4690 24 7 2.1672 -2.6280 2.5574 25 6 2.9238 -1.9710 3.4135 26 7 3.2527 -0.7091 3.2222 27 6 2.8298 -0.0528 2.1538 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1493 0.5390 -2.5435 32 1 2.9002 0.8776 -4.5680 33 1 1.2437 0.4168 -5.0274 34 1 3.7825 -1.0642 -5.8522 35 1 2.8475 0.0380 -6.8921 36 1 2.2818 -2.3901 -7.2615 37 1 0.8820 -1.4179 -6.7391 38 1 0.3962 -3.4243 -7.2785 39 1 0.2277 -1.7153 -4.1049 40 1 1.2760 -2.8472 -3.2121 41 1 1.0795 -2.5780 0.7740 42 1 3.2841 -2.4803 4.2950 43 1 3.1032 0.9810 2.0028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008283721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:34 Heat of formation + Delta-G solvation = 23.850999 kcal Electronic energy + Delta-G solvation = -25066.425803 eV Core-core repulsion = 21532.944799 eV Total energy + Delta-G solvation = -3533.481004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.35907 -39.80714 -37.66384 -34.97564 -34.59705 -33.82884 -32.60112 -30.57394 -30.35122 -28.54064 -25.57909 -25.12925 -24.68713 -23.57871 -22.29950 -21.64351 -20.10337 -19.36045 -17.95757 -17.81318 -17.42130 -16.73649 -16.18844 -15.15193 -14.85286 -14.75007 -14.41377 -14.15451 -13.85326 -13.77483 -13.73409 -13.61065 -13.41466 -12.96337 -12.68716 -12.56634 -12.37828 -12.06709 -11.90378 -11.22483 -10.99972 -10.94559 -10.75763 -10.73383 -10.41116 -10.14209 -10.08914 -10.00512 -9.79291 -9.50903 -9.37337 -9.33657 -8.98136 -8.31869 -6.90520 -6.07763 -3.23808 0.69858 0.95111 2.64358 3.16306 3.52148 3.56038 3.67139 3.71957 3.94788 4.06346 4.23437 4.41850 4.42694 4.61248 4.73335 4.84967 5.07804 5.13703 5.24018 5.28109 5.33521 5.35968 5.41608 5.52755 5.55868 5.66478 5.80949 5.89268 5.98321 6.06983 6.21454 6.32801 6.39550 6.50552 6.51276 6.65277 6.78078 6.82173 7.02867 7.14523 7.58199 7.91384 8.02829 8.28575 8.57556 9.09841 9.83942 10.25724 11.20968 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003583 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.435912 B = 7813.083105 C = 8791.082147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.109 0.891 4 C 0.513 3.487 5 O -0.528 6.528 6 N -0.719 5.719 7 C 0.126 3.874 8 H 0.087 0.913 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.147 3.853 12 N -0.595 5.595 13 C -0.348 4.348 14 H 0.057 0.943 15 C -0.023 4.023 16 N -0.917 5.917 17 Si 1.065 2.935 18 H -0.294 1.294 19 H -0.292 1.292 20 H -0.286 1.286 21 C 0.146 3.854 22 C -0.170 4.170 23 C 0.184 3.816 24 N -0.518 5.518 25 C 0.288 3.712 26 N -0.523 5.523 27 C 0.152 3.848 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.395 0.605 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.017 0.983 38 H 0.268 0.732 39 H 0.016 0.984 40 H 0.059 0.941 41 H 0.165 0.835 42 H 0.195 0.805 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 14.179 15.290 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.404 6.404 6 N -0.369 5.369 7 C 0.020 3.980 8 H 0.105 0.895 9 C -0.153 4.153 10 C -0.174 4.174 11 C 0.021 3.979 12 N -0.319 5.319 13 C -0.477 4.477 14 H 0.075 0.925 15 C -0.224 4.224 16 N -0.557 5.557 17 Si 0.894 3.106 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.211 1.211 21 C 0.018 3.982 22 C -0.175 4.175 23 C 0.018 3.982 24 N -0.232 5.232 25 C 0.000 4.000 26 N -0.237 5.237 27 C -0.014 4.014 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.182 0.818 42 H 0.211 0.789 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.614 11.775 15.020 19.095 hybrid contribution -0.879 2.028 0.396 2.246 sum -0.264 13.803 15.416 20.694 Atomic orbital electron populations 1.21823 0.91457 1.03580 1.03186 1.20166 0.98014 1.00196 0.90180 0.87317 1.20308 0.80660 0.84884 0.84427 1.90781 1.37358 1.25796 1.86467 1.46096 1.53359 1.31685 1.05802 1.21836 1.00224 0.93610 0.82299 0.89534 1.21670 1.00900 0.97207 0.95504 1.22062 1.00912 0.98639 0.95791 1.21015 0.95128 0.90273 0.91500 1.44076 1.78145 1.04304 1.05334 1.20013 1.44700 0.83971 0.99048 0.92533 1.25841 0.98757 1.03377 0.94474 1.70768 1.21439 1.25572 1.37930 0.83547 0.75906 0.75155 0.75950 1.22108 1.21819 1.21149 1.21248 0.93376 0.93479 0.90091 1.21115 1.01368 0.97183 0.97797 1.23049 0.92483 0.90772 0.91932 1.68473 1.11488 1.39140 1.04050 1.24979 0.90294 0.87507 0.97212 1.68421 1.22861 1.10603 1.21773 1.23069 0.90046 0.99986 0.88280 0.91198 0.91036 0.91492 0.77145 0.92824 0.92215 0.92061 0.92462 0.89987 0.96462 0.92102 0.96665 0.92293 0.81809 0.78871 0.81743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.91 37.16 0.33 -0.67 16 2 C -0.06 -0.56 2.93 -92.92 -0.27 -0.83 16 3 H 0.11 0.65 7.95 -51.93 -0.41 0.24 16 4 C 0.51 6.86 7.01 -10.99 -0.08 6.79 16 5 O -0.53 -9.76 14.84 5.55 0.08 -9.68 16 6 N -0.72 -9.05 4.97 -53.47 -0.27 -9.32 16 7 C 0.13 2.13 2.62 -67.59 -0.18 1.95 16 8 H 0.09 1.75 7.58 -51.93 -0.39 1.35 16 9 C -0.11 -1.72 5.35 -26.69 -0.14 -1.86 16 10 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 11 C 0.15 3.33 4.69 -3.71 -0.02 3.31 16 12 N -0.59 -14.87 2.85 -172.05 -0.49 -15.36 16 13 C -0.35 -9.90 9.49 -15.06 -0.14 -10.05 16 14 H 0.06 1.66 7.95 -52.48 -0.42 1.24 16 15 C -0.02 -0.65 4.68 -17.43 -0.08 -0.73 16 16 N -0.92 -27.32 12.40 55.49 0.69 -26.63 16 17 Si 1.06 25.67 29.99 -169.99 -5.10 20.58 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.15 3.07 6.12 -3.48 -0.02 3.05 16 22 C -0.17 -1.84 4.40 -104.36 -0.46 -2.30 16 23 C 0.18 2.35 9.28 -17.21 -0.16 2.19 16 24 N -0.52 -6.90 10.44 -14.58 -0.15 -7.05 16 25 C 0.29 3.30 12.29 -92.15 -1.13 2.17 16 26 N -0.52 -6.07 10.44 -14.58 -0.15 -6.22 16 27 C 0.15 1.54 10.96 -17.20 -0.19 1.35 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 7.56 -51.93 -0.39 0.02 16 30 H 0.07 0.55 7.47 -51.93 -0.39 0.16 16 31 H 0.39 3.57 8.02 -40.82 -0.33 3.24 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 37 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 38 H 0.27 8.00 6.72 -40.82 -0.27 7.73 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 41 H 0.16 2.08 7.64 -52.49 -0.40 1.68 16 42 H 0.19 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.17 1.11 8.01 -52.49 -0.42 0.69 16 LS Contribution 349.94 15.07 5.27 5.27 Total: -1.00 -34.91 349.94 -9.14 -44.05 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.33 Total: 2.55 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.70 Total: 1.81 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.37 Total: -64.58 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.10 Total: 20.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.91 -9.14 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008283721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.903 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds