Wall clock time and date at job start Tue Mar 31 2020 09:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99854 * 2 1 3 5 5 C 1.34770 * 120.00032 * 274.99887 * 4 2 1 6 6 O 1.21519 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.48156 * 120.00033 * 180.02562 * 5 4 2 8 8 C 1.39437 * 120.09646 * 179.72485 * 7 5 4 9 9 N 1.32088 * 119.87150 * 179.75538 * 8 7 5 10 10 C 1.32136 * 120.06765 * 0.51848 * 9 8 7 11 11 C 1.38722 * 120.19823 * 359.73394 * 10 9 8 12 12 N 1.31799 * 120.12791 * 0.02562 * 11 10 9 13 13 C 1.52995 * 109.47294 * 239.99928 * 2 1 3 14 14 H 1.09005 * 109.52411 * 299.92149 * 13 2 1 15 15 C 1.53036 * 109.50129 * 60.00007 * 13 2 1 16 16 C 1.53038 * 109.54474 * 181.31781 * 15 13 2 17 17 C 1.53198 * 109.30917 * 298.63857 * 16 15 13 18 18 N 1.46927 * 108.77694 * 54.63122 * 17 16 15 19 19 C 1.36936 * 120.62750 * 126.40871 * 18 17 16 20 20 H 1.08000 * 120.00070 * 207.67278 * 19 18 17 21 21 C 1.38812 * 119.99785 * 27.68124 * 19 18 17 22 22 N 1.31617 * 120.00378 * 17.35072 * 21 19 18 23 23 Si 1.86807 * 119.99569 * 197.35122 * 21 19 18 24 24 H 1.48498 * 109.47223 * 60.00170 * 23 21 19 25 25 H 1.48507 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47060 * 299.99503 * 23 21 19 27 27 C 1.46919 * 118.73967 * 306.39379 * 18 17 16 28 28 H 1.09006 * 109.46807 * 60.00063 * 1 2 3 29 29 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47304 * 300.00495 * 1 2 3 31 31 H 0.96999 * 119.99922 * 95.00151 * 4 2 1 32 32 H 1.07999 * 120.06483 * 0.02562 * 8 7 5 33 33 H 1.08006 * 119.89548 * 179.70912 * 10 9 8 34 34 H 1.08006 * 119.93757 * 179.97438 * 11 10 9 35 35 H 1.09007 * 109.46049 * 301.34143 * 15 13 2 36 36 H 1.09004 * 109.45575 * 61.30859 * 15 13 2 37 37 H 1.08998 * 109.49290 * 58.58318 * 16 15 13 38 38 H 1.08996 * 109.50117 * 178.65413 * 16 15 13 39 39 H 1.09001 * 109.58174 * 174.42265 * 17 16 15 40 40 H 1.09000 * 109.58082 * 294.84149 * 17 16 15 41 41 H 0.96999 * 120.00020 * 180.02562 * 22 21 19 42 42 H 1.09009 * 109.58563 * 293.81960 * 27 18 17 43 43 H 1.09001 * 109.58924 * 173.39488 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8585 1.1609 2.4116 7 6 2.6413 -0.7165 3.5667 8 6 2.7807 -0.0215 4.7674 9 7 3.2172 -0.6495 5.8443 10 6 3.5310 -1.9316 5.7814 11 6 3.3984 -2.6246 4.5871 12 7 2.9591 -2.0067 3.5090 13 6 2.0400 -0.7212 -1.2492 14 1 1.6783 -1.7495 -1.2493 15 6 1.5303 -0.0004 -2.4992 16 6 2.0127 -0.7399 -3.7492 17 6 3.5443 -0.7370 -3.7801 18 7 4.0439 -1.2971 -2.5169 19 6 4.9328 -2.3388 -2.5189 20 1 4.9619 -3.0255 -1.6858 21 6 5.7965 -2.5121 -3.5917 22 7 6.0121 -1.5205 -4.4299 23 14 6.6529 -4.1527 -3.8457 24 1 5.6357 -5.2191 -4.0282 25 1 7.5148 -4.0796 -5.0528 26 1 7.4887 -4.4639 -2.6582 27 6 3.5719 -0.7182 -1.2518 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2490 -1.6318 1.1527 32 1 2.5281 1.0274 4.8179 33 1 3.8921 -2.4412 6.6626 34 1 3.6565 -3.6723 4.5403 35 1 0.4405 0.0204 -2.4874 36 1 1.9128 1.0203 -2.5111 37 1 1.6513 -1.7680 -3.7257 38 1 1.6294 -0.2397 -4.6385 39 1 3.8941 -1.3461 -4.6136 40 1 3.9054 0.2850 -3.8948 41 1 6.6154 -1.6417 -5.1797 42 1 3.9354 0.3054 -1.1603 43 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025326421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:27 Heat of formation + Delta-G solvation = 26.777059 kcal Electronic energy + Delta-G solvation = -25035.503079 eV Core-core repulsion = 21502.148958 eV Total energy + Delta-G solvation = -3533.354121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47806 -39.63995 -37.89625 -35.33445 -34.70073 -33.00431 -32.06257 -30.83310 -30.42079 -28.49437 -25.88503 -25.17349 -24.80801 -23.40010 -21.95667 -21.16011 -20.37273 -19.25988 -18.16765 -17.77902 -17.06316 -16.64300 -15.88785 -15.56683 -15.24515 -14.83879 -14.40762 -14.34056 -14.03790 -13.64094 -13.39113 -13.17887 -13.13160 -12.66932 -12.46339 -12.26117 -12.00354 -11.81484 -11.62370 -11.52800 -11.11505 -10.96102 -10.66812 -10.46018 -10.39198 -10.19944 -10.14184 -9.89347 -9.76913 -9.61059 -9.44329 -9.35861 -8.94715 -8.45291 -6.66317 -5.78117 -3.20386 0.11447 0.73047 2.60293 2.97782 3.37714 3.43714 3.44571 3.54689 3.73100 3.87311 4.13690 4.48024 4.56300 4.83236 4.89197 4.99365 5.19751 5.24589 5.37244 5.41445 5.55196 5.59427 5.76063 5.80149 5.93040 6.01013 6.07233 6.11325 6.29037 6.35081 6.42548 6.51575 6.62552 6.70896 6.78686 6.82241 6.87903 6.98658 7.27422 7.41063 7.56759 7.68243 7.79440 8.12244 8.45454 9.21949 9.85585 10.42428 11.30194 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.004110 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.748257 B = 6811.359891 C = 8413.173921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.089 0.911 4 N -0.694 5.694 5 C 0.574 3.426 6 O -0.533 6.533 7 C 0.034 3.966 8 C 0.107 3.893 9 N -0.441 5.441 10 C 0.068 3.932 11 C 0.052 3.948 12 N -0.409 5.409 13 C -0.111 4.111 14 H 0.073 0.927 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.155 3.845 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.411 0.589 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.086 0.914 40 H 0.017 0.983 41 H 0.254 0.746 42 H 0.016 0.984 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -0.590 15.083 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.107 0.893 4 N -0.344 5.344 5 C 0.357 3.643 6 O -0.410 6.410 7 C -0.107 4.107 8 C -0.053 4.053 9 N -0.155 5.155 10 C -0.093 4.093 11 C -0.110 4.110 12 N -0.127 5.127 13 C -0.132 4.132 14 H 0.091 0.909 15 C -0.139 4.139 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.028 3.972 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.248 0.752 32 H 0.200 0.800 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.622 0.293 14.910 17.748 hybrid contribution 0.710 -1.426 -0.152 1.601 sum -8.912 -1.133 14.758 17.277 Atomic orbital electron populations 1.22206 0.95416 1.02035 1.02299 1.21171 0.93680 0.97627 0.83446 0.89306 1.45973 1.64619 1.14893 1.08886 1.17612 0.78223 0.86006 0.82483 1.90793 1.50814 1.14759 1.84586 1.22314 1.00528 0.91622 0.96268 1.23849 0.92084 1.01917 0.87447 1.68628 1.08125 1.09429 1.29364 1.24112 0.94603 0.91154 0.99396 1.23896 0.96173 1.02041 0.88938 1.68389 1.05749 1.08206 1.30347 1.21975 0.99615 0.99277 0.92300 0.90910 1.21445 0.98748 0.99052 0.94632 1.22176 1.00872 0.99353 0.95710 1.20799 0.87448 0.97217 0.90218 1.44030 1.49720 1.38077 0.99475 1.19126 1.11305 1.02248 1.05572 0.91808 1.25019 0.97250 0.97439 0.99858 1.70031 1.38041 1.29383 1.17197 0.86390 0.79136 0.84049 0.77310 1.21035 1.21636 1.20941 1.20866 0.89841 0.96362 0.90115 0.91050 0.92567 0.92605 0.75218 0.80024 0.80720 0.80470 0.93076 0.92544 0.92771 0.93218 0.89563 0.96520 0.93603 0.96588 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.15 2.09 2.16 -67.93 -0.15 1.94 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.69 -9.69 4.47 -54.65 -0.24 -9.94 16 5 C 0.57 8.29 7.78 -12.19 -0.09 8.20 16 6 O -0.53 -8.81 16.01 5.35 0.09 -8.73 16 7 C 0.03 0.43 6.75 -82.84 -0.56 -0.13 16 8 C 0.11 1.22 10.77 -17.00 -0.18 1.04 16 9 N -0.44 -4.67 10.49 -12.71 -0.13 -4.80 16 10 C 0.07 0.54 11.23 -17.24 -0.19 0.34 16 11 C 0.05 0.44 11.22 -17.39 -0.20 0.24 16 12 N -0.41 -4.77 9.71 -9.61 -0.09 -4.87 16 13 C -0.11 -1.82 1.97 -90.50 -0.18 -2.00 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.10 -1.63 4.85 -26.69 -0.13 -1.76 16 16 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 17 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 18 N -0.59 -14.65 2.99 -172.32 -0.52 -15.17 16 19 C -0.25 -6.89 9.59 -15.06 -0.14 -7.03 16 20 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 22 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 23 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.15 3.21 5.56 -3.71 -0.02 3.19 16 28 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.41 5.55 7.78 -40.82 -0.32 5.23 16 32 H 0.18 1.90 7.65 -52.49 -0.40 1.50 16 33 H 0.18 0.70 8.06 -52.48 -0.42 0.27 16 34 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.02 0.36 8.14 -51.92 -0.42 -0.07 16 43 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -32.00 349.79 -8.06 -40.06 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.25 Total: 3.66 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.77 Total: 3.53 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.37 Total: -60.33 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.00 -8.06 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025326421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.840 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds