Wall clock time and date at job start Tue Mar 31 2020 09:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47165 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99854 * 2 1 3 5 5 C 1.34770 * 120.00032 * 274.99887 * 4 2 1 6 6 O 1.21519 * 120.00334 * 359.97438 * 5 4 2 7 7 C 1.48156 * 120.00033 * 180.02562 * 5 4 2 8 8 C 1.39437 * 120.09646 * 179.72485 * 7 5 4 9 9 N 1.32088 * 119.87150 * 179.75538 * 8 7 5 10 10 C 1.32136 * 120.06765 * 0.51848 * 9 8 7 11 11 C 1.38722 * 120.19823 * 359.73394 * 10 9 8 12 12 N 1.31799 * 120.12791 * 0.02562 * 11 10 9 13 13 C 1.52995 * 109.47294 * 239.99928 * 2 1 3 14 14 H 1.09005 * 109.52411 * 299.92149 * 13 2 1 15 15 C 1.53036 * 109.50129 * 60.00007 * 13 2 1 16 16 C 1.53038 * 109.54474 * 181.31781 * 15 13 2 17 17 C 1.53198 * 109.30917 * 298.63857 * 16 15 13 18 18 N 1.46927 * 108.77694 * 54.63122 * 17 16 15 19 19 C 1.36936 * 120.62750 * 126.40871 * 18 17 16 20 20 H 1.08000 * 120.00070 * 207.67278 * 19 18 17 21 21 C 1.38812 * 119.99785 * 27.68124 * 19 18 17 22 22 N 1.31617 * 120.00378 * 17.35072 * 21 19 18 23 23 Si 1.86807 * 119.99569 * 197.35122 * 21 19 18 24 24 H 1.48498 * 109.47223 * 60.00170 * 23 21 19 25 25 H 1.48507 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47060 * 299.99503 * 23 21 19 27 27 C 1.46919 * 118.73967 * 306.39379 * 18 17 16 28 28 H 1.09006 * 109.46807 * 60.00063 * 1 2 3 29 29 H 1.09002 * 109.47165 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47304 * 300.00495 * 1 2 3 31 31 H 0.96999 * 119.99922 * 95.00151 * 4 2 1 32 32 H 1.07999 * 120.06483 * 0.02562 * 8 7 5 33 33 H 1.08006 * 119.89548 * 179.70912 * 10 9 8 34 34 H 1.08006 * 119.93757 * 179.97438 * 11 10 9 35 35 H 1.09007 * 109.46049 * 301.34143 * 15 13 2 36 36 H 1.09004 * 109.45575 * 61.30859 * 15 13 2 37 37 H 1.08998 * 109.49290 * 58.58318 * 16 15 13 38 38 H 1.08996 * 109.50117 * 178.65413 * 16 15 13 39 39 H 1.09001 * 109.58174 * 174.42265 * 17 16 15 40 40 H 1.09000 * 109.58082 * 294.84149 * 17 16 15 41 41 H 0.96999 * 120.00020 * 180.02562 * 22 21 19 42 42 H 1.09009 * 109.58563 * 293.81960 * 27 18 17 43 43 H 1.09001 * 109.58924 * 173.39488 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8585 1.1609 2.4116 7 6 2.6413 -0.7165 3.5667 8 6 2.7807 -0.0215 4.7674 9 7 3.2172 -0.6495 5.8443 10 6 3.5310 -1.9316 5.7814 11 6 3.3984 -2.6246 4.5871 12 7 2.9591 -2.0067 3.5090 13 6 2.0400 -0.7212 -1.2492 14 1 1.6783 -1.7495 -1.2493 15 6 1.5303 -0.0004 -2.4992 16 6 2.0127 -0.7399 -3.7492 17 6 3.5443 -0.7370 -3.7801 18 7 4.0439 -1.2971 -2.5169 19 6 4.9328 -2.3388 -2.5189 20 1 4.9619 -3.0255 -1.6858 21 6 5.7965 -2.5121 -3.5917 22 7 6.0121 -1.5205 -4.4299 23 14 6.6529 -4.1527 -3.8457 24 1 5.6357 -5.2191 -4.0282 25 1 7.5148 -4.0796 -5.0528 26 1 7.4887 -4.4639 -2.6582 27 6 3.5719 -0.7182 -1.2518 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2490 -1.6318 1.1527 32 1 2.5281 1.0274 4.8179 33 1 3.8921 -2.4412 6.6626 34 1 3.6565 -3.6723 4.5403 35 1 0.4405 0.0204 -2.4874 36 1 1.9128 1.0203 -2.5111 37 1 1.6513 -1.7680 -3.7257 38 1 1.6294 -0.2397 -4.6385 39 1 3.8941 -1.3461 -4.6136 40 1 3.9054 0.2850 -3.8948 41 1 6.6154 -1.6417 -5.1797 42 1 3.9354 0.3054 -1.1603 43 1 3.9400 -1.3148 -0.4171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025326421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:26 Heat of formation + Delta-G solvation = 4.789910 kcal Electronic energy + Delta-G solvation = -25036.456513 eV Core-core repulsion = 21502.148958 eV Total energy + Delta-G solvation = -3534.307555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30110 -40.78146 -39.36489 -36.77923 -35.56424 -34.63148 -33.02062 -32.42167 -31.92275 -29.90330 -27.20964 -26.62835 -25.63441 -24.72168 -23.62073 -22.49179 -21.58213 -20.79544 -19.20865 -18.75790 -18.48187 -17.76087 -17.04588 -16.85079 -16.51409 -16.12712 -15.81465 -15.56462 -15.20406 -15.07709 -14.93950 -14.68910 -14.12564 -14.02949 -13.89383 -13.71544 -13.27096 -13.02193 -12.81499 -12.75005 -12.61881 -12.41553 -12.31065 -12.22357 -11.98133 -11.78151 -11.56764 -11.47373 -11.20233 -11.05346 -10.56295 -10.52327 -10.20803 -10.10325 -8.68183 -7.86863 -5.32699 -0.68702 -0.02714 1.46457 1.49070 1.55866 1.61735 1.95081 2.51013 2.71298 2.91111 3.17860 3.27260 3.37872 3.53155 3.75444 3.92656 3.99914 4.04888 4.09574 4.30569 4.35167 4.43638 4.50084 4.52022 4.63546 4.76513 4.85335 4.87133 4.93467 5.04590 5.10406 5.23016 5.25207 5.26507 5.33393 5.44475 5.49825 5.57251 5.66921 5.78863 6.03332 6.35310 6.39294 6.63016 7.02696 7.14858 7.86110 8.38181 9.19102 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.004110 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.748257 B = 6811.359891 C = 8413.173921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.152 3.848 3 H 0.071 0.929 4 N -0.693 5.693 5 C 0.572 3.428 6 O -0.562 6.562 7 C 0.010 3.990 8 C 0.100 3.900 9 N -0.459 5.459 10 C 0.085 3.915 11 C 0.056 3.944 12 N -0.430 5.430 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.097 4.097 16 C -0.130 4.130 17 C 0.172 3.828 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.156 3.844 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.181 0.819 33 H 0.220 0.780 34 H 0.216 0.784 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.052 0.948 40 H -0.010 1.010 41 H 0.249 0.751 42 H -0.003 1.003 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 -2.453 16.739 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.090 0.910 4 N -0.343 5.343 5 C 0.357 3.643 6 O -0.441 6.441 7 C -0.130 4.130 8 C -0.058 4.058 9 N -0.173 5.173 10 C -0.076 4.076 11 C -0.108 4.108 12 N -0.148 5.148 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.135 4.135 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.030 3.970 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.251 0.749 32 H 0.198 0.802 33 H 0.237 0.763 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.008 0.992 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.841 -1.549 16.573 19.865 hybrid contribution 1.169 -0.899 -0.541 1.571 sum -9.672 -2.448 16.032 18.883 Atomic orbital electron populations 1.22134 0.93144 1.02959 1.02826 1.21032 0.95275 0.96293 0.82678 0.91033 1.45949 1.64614 1.14933 1.08758 1.17915 0.77582 0.85749 0.83075 1.90762 1.52188 1.15970 1.85175 1.21979 1.02854 0.92416 0.95704 1.23831 0.92348 1.02075 0.87524 1.68698 1.08843 1.10924 1.28873 1.24889 0.91953 0.90096 1.00708 1.24609 0.94494 1.03523 0.88148 1.68347 1.06567 1.07818 1.32095 1.21741 0.95953 0.99979 0.93748 0.90440 1.21448 1.01006 0.98176 0.92857 1.22006 0.96574 1.00198 0.98128 1.20652 0.91029 0.94710 0.88918 1.44305 1.49824 1.38022 1.01000 1.19483 1.11405 1.02886 1.05585 0.91551 1.25799 0.98371 1.00568 0.99854 1.70199 1.39028 1.31294 1.17710 0.85350 0.78073 0.80115 0.76964 1.20125 1.22140 1.20168 1.20942 0.92957 0.94737 0.88373 0.89604 0.91380 0.92999 0.74906 0.80201 0.76326 0.76749 0.89196 0.92963 0.92665 0.91070 0.92922 0.99208 0.94160 0.98524 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.13 71.98 0.66 -2.77 16 2 C 0.15 4.24 2.16 44.99 0.10 4.34 16 3 H 0.07 2.28 7.58 -2.39 -0.02 2.26 16 4 N -0.69 -19.20 4.47 -445.11 -1.99 -21.19 16 5 C 0.57 16.77 7.78 86.88 0.68 17.45 16 6 O -0.56 -19.09 16.01 -3.78 -0.06 -19.16 16 7 C 0.01 0.24 6.75 41.89 0.28 0.52 16 8 C 0.10 2.28 10.77 84.94 0.92 3.20 16 9 N -0.46 -8.96 10.49 -194.12 -2.04 -11.00 16 10 C 0.09 1.07 11.23 84.76 0.95 2.02 16 11 C 0.06 0.77 11.22 84.81 0.95 1.73 16 12 N -0.43 -9.48 9.71 -184.33 -1.79 -11.27 16 13 C -0.09 -2.98 1.97 -10.72 -0.02 -3.00 16 14 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 15 C -0.10 -2.95 4.85 30.62 0.15 -2.80 16 16 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 17 C 0.17 8.40 5.31 86.36 0.46 8.86 16 18 N -0.61 -30.81 2.99 -699.09 -2.09 -32.91 16 19 C -0.26 -14.56 9.59 84.03 0.81 -13.75 16 20 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 21 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 22 N -0.94 -56.08 11.19 21.65 0.24 -55.84 16 23 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 27 C 0.16 6.55 5.56 86.36 0.48 7.03 16 28 H 0.09 1.68 6.40 -2.38 -0.02 1.66 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.41 10.98 7.78 -92.71 -0.72 10.25 16 32 H 0.18 3.93 7.65 -2.91 -0.02 3.91 16 33 H 0.22 0.66 8.06 -2.91 -0.02 0.63 16 34 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.09 2.12 6.36 -2.38 -0.02 2.10 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.90 6.04 -2.39 -0.01 2.89 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 43 H 0.05 2.01 7.45 -2.39 -0.02 1.99 16 Total: -1.00 -72.28 349.79 1.61 -70.67 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.30 Total: 18.01 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 7.01 Total: 15.86 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -7.67 Total: -132.20 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.28 1.61 -70.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025326421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.459 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds