Wall clock time and date at job start Tue Mar 31 2020 08:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46859 * 2 1 4 4 N 1.46498 * 109.46983 * 175.02466 * 3 2 1 5 5 N 1.28442 * 125.19404 * 274.53745 * 4 3 2 6 6 C 1.30863 * 110.93062 * 180.02562 * 5 4 3 7 7 C 1.39674 * 107.86192 * 359.77481 * 6 5 4 8 8 C 1.36604 * 125.18830 * 94.56408 * 4 3 2 9 9 C 1.47156 * 126.88538 * 359.93825 * 8 4 3 10 10 O 1.21633 * 120.00147 * 5.65629 * 9 8 4 11 11 N 1.34776 * 120.00099 * 185.65488 * 9 8 4 12 12 C 1.47869 * 126.94204 * 354.70106 * 11 9 8 13 13 C 1.56022 * 105.10371 * 182.01726 * 12 11 9 14 14 H 1.09004 * 116.24992 * 159.67677 * 13 12 11 15 15 C 1.57084 * 99.60560 * 32.80724 * 13 12 11 16 16 C 1.49285 * 126.94672 * 174.71942 * 11 9 8 17 17 H 1.09000 * 116.15538 * 15.82265 * 16 11 9 18 18 C 1.55996 * 104.32194 * 246.59953 * 16 11 9 19 19 N 1.47869 * 105.11456 * 289.11467 * 18 16 11 20 20 C 1.36935 * 126.94515 * 181.87958 * 19 18 16 21 21 H 1.08001 * 119.99877 * 179.68420 * 20 19 18 22 22 C 1.38810 * 120.00308 * 359.67622 * 20 19 18 23 23 N 1.31621 * 119.99870 * 359.72981 * 22 20 19 24 24 Si 1.86804 * 120.00372 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46920 * 90.00027 * 24 22 20 26 26 H 1.48495 * 109.46918 * 210.00049 * 24 22 20 27 27 H 1.48497 * 109.46799 * 330.00492 * 24 22 20 28 28 H 1.08997 * 109.47228 * 64.98521 * 1 2 3 29 29 H 1.09007 * 109.46473 * 184.98405 * 1 2 3 30 30 H 1.08995 * 109.47074 * 304.97683 * 1 2 3 31 31 H 1.08994 * 109.47202 * 240.00231 * 2 1 3 32 32 H 1.09005 * 109.47428 * 120.00057 * 2 1 3 33 33 H 1.08995 * 109.47365 * 55.02665 * 3 2 1 34 34 H 1.08999 * 109.46882 * 295.02496 * 3 2 1 35 35 H 1.07994 * 126.06551 * 179.97438 * 6 5 4 36 36 H 1.07992 * 127.31943 * 180.23094 * 7 6 5 37 37 H 1.08996 * 110.31976 * 63.11495 * 12 11 9 38 38 H 1.08992 * 110.40020 * 300.97057 * 12 11 9 39 39 H 1.09000 * 112.37100 * 64.27013 * 15 13 12 40 40 H 1.08996 * 112.37180 * 191.71706 * 15 13 12 41 41 H 1.08997 * 110.42311 * 170.14708 * 18 16 11 42 42 H 1.09003 * 110.20330 * 47.96634 * 18 16 11 43 43 H 0.96994 * 120.00324 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5000 1.4443 0.1198 5 7 4.1522 1.3925 1.2251 6 6 5.4425 1.4108 1.0079 7 6 5.6437 1.4761 -0.3727 8 6 4.3757 1.5019 -0.9271 9 6 4.0385 1.5711 -2.3578 10 8 2.8782 1.6852 -2.7044 11 7 5.0154 1.5082 -3.2842 12 6 6.4732 1.4797 -3.0380 13 6 7.1246 1.4587 -4.4556 14 1 8.1657 1.7767 -4.5125 15 6 6.0686 2.3153 -5.2420 16 6 4.8445 1.4535 -4.7662 17 1 3.8617 1.7315 -5.1471 18 6 5.3596 0.0353 -5.1620 19 7 6.8251 0.0907 -4.9730 20 6 7.7262 -0.9087 -5.2269 21 1 8.7791 -0.7438 -5.0518 22 6 7.2863 -2.1337 -5.7093 23 7 6.0026 -2.3365 -5.9176 24 14 8.5154 -3.4973 -6.0551 25 1 8.6951 -4.3231 -4.8340 26 1 8.0098 -4.3509 -7.1600 27 1 9.8184 -2.9017 -6.4460 28 1 -0.3633 0.4345 -0.9312 29 1 -0.3632 -1.0239 0.0893 30 1 -0.3633 0.5891 0.8420 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6057 1.9815 0.8420 34 1 1.7512 1.9300 -0.9312 35 1 6.2147 1.3776 1.7622 36 1 6.5878 1.5029 -0.8962 37 1 6.7458 0.5821 -2.4830 38 1 6.7837 2.3704 -2.4919 39 1 6.0172 3.3430 -4.8822 40 1 6.2157 2.2668 -6.3209 41 1 5.1203 -0.1794 -6.2035 42 1 4.9221 -0.7199 -4.5090 43 1 5.6952 -3.1926 -6.2543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032425994.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:31 Heat of formation + Delta-G solvation = 105.664228 kcal Electronic energy + Delta-G solvation = -25829.041520 eV Core-core repulsion = 22299.108204 eV Total energy + Delta-G solvation = -3529.933316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39970 -40.01607 -37.77553 -35.43324 -33.74986 -32.04239 -31.41520 -30.49477 -28.89099 -28.60419 -26.54110 -25.33093 -24.18005 -22.44250 -22.04179 -21.60443 -19.95799 -19.79500 -18.86049 -17.49992 -16.51952 -16.22780 -15.82829 -15.53336 -15.24990 -14.89227 -14.53052 -14.07899 -13.90361 -13.72132 -13.26030 -13.13252 -13.01321 -12.28265 -12.17037 -11.96449 -11.93810 -11.73033 -11.47437 -11.36991 -11.11146 -10.94313 -10.90963 -10.85244 -10.68847 -10.54964 -10.25865 -10.11350 -9.70774 -9.65384 -9.07250 -8.87081 -8.75021 -8.11255 -6.97511 -5.80965 -3.15542 1.47277 2.45794 2.75414 3.32810 3.35536 3.40183 3.42688 3.51051 4.38616 4.55847 4.62034 4.76391 4.97787 5.03509 5.08228 5.11743 5.26762 5.32435 5.35478 5.47740 5.51933 5.56687 5.60999 5.69572 5.71097 5.84037 5.88339 5.90756 6.01751 6.10938 6.13432 6.20917 6.33623 6.40210 6.53384 6.59824 6.64339 6.86096 7.36288 7.41545 7.66800 7.90709 8.05354 8.16315 8.40779 9.05902 9.67076 10.35200 11.31408 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.004326 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.627381 B = 6470.732739 C = 6686.556170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.114 3.886 4 N -0.258 5.258 5 N -0.285 5.285 6 C -0.009 4.009 7 C -0.196 4.196 8 C -0.025 4.025 9 C 0.602 3.398 10 O -0.558 6.558 11 N -0.588 5.588 12 C 0.077 3.923 13 C 0.140 3.860 14 H 0.109 0.891 15 C -0.150 4.150 16 C 0.101 3.899 17 H 0.117 0.883 18 C 0.174 3.826 19 N -0.597 5.597 20 C -0.232 4.232 21 H 0.082 0.918 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.184 0.816 36 H 0.169 0.831 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 9.548 9.594 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.046 5.046 5 N -0.117 5.117 6 C -0.185 4.185 7 C -0.225 4.225 8 C -0.153 4.153 9 C 0.389 3.611 10 O -0.438 6.438 11 N -0.320 5.320 12 C -0.048 4.048 13 C 0.031 3.969 14 H 0.127 0.873 15 C -0.190 4.190 16 C -0.001 4.001 17 H 0.134 0.866 18 C 0.048 3.952 19 N -0.321 5.321 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.201 0.799 36 H 0.186 0.814 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.527 9.270 10.205 14.854 hybrid contribution 1.267 -0.934 -0.620 1.691 sum -4.260 8.336 9.586 13.399 Atomic orbital electron populations 1.21657 0.94110 1.02345 1.02233 1.21831 0.96951 0.95283 1.03381 1.22331 0.72960 0.99626 1.05672 1.45747 1.07464 1.49602 1.01790 1.73120 1.07505 1.20171 1.10919 1.23544 0.92401 1.06419 0.96124 1.22782 0.97305 1.07758 0.94637 1.21455 0.90542 1.12628 0.90703 1.16452 0.84472 0.77330 0.82801 1.90708 1.18631 1.52881 1.81621 1.48828 1.06561 1.69641 1.06923 1.23644 0.79584 1.00507 1.01103 1.23230 0.96693 0.87265 0.89712 0.87310 1.24164 0.96449 0.97238 1.01160 1.24426 0.98781 0.99703 0.77187 0.86556 1.21945 0.83526 0.89494 1.00192 1.45241 1.02797 1.08410 1.75645 1.19050 0.88649 0.90650 1.37678 0.90051 1.24814 0.96209 0.97826 1.01290 1.69904 1.12255 1.23877 1.50620 0.86118 0.80024 0.81974 0.77614 1.21589 1.21677 1.20575 0.91964 0.91987 0.92510 0.90843 0.91335 0.88915 0.86095 0.79933 0.81374 0.90291 0.92117 0.91490 0.89538 0.92410 0.93394 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.14 -1.72 6.26 -26.73 -0.17 -1.89 16 3 C 0.11 1.52 5.98 -4.04 -0.02 1.49 16 4 N -0.26 -4.07 3.35 -57.14 -0.19 -4.27 16 5 N -0.28 -4.38 11.90 30.59 0.36 -4.01 16 6 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 7 C -0.20 -2.91 9.58 -38.98 -0.37 -3.29 16 8 C -0.03 -0.42 6.93 -82.06 -0.57 -0.99 16 9 C 0.60 11.24 7.87 -12.64 -0.10 11.14 16 10 O -0.56 -11.22 14.92 5.25 0.08 -11.14 16 11 N -0.59 -10.68 2.96 -158.14 -0.47 -11.15 16 12 C 0.08 1.26 4.40 -1.67 -0.01 1.25 16 13 C 0.14 2.46 5.53 -62.55 -0.35 2.12 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C -0.15 -2.42 6.80 -22.30 -0.15 -2.57 16 16 C 0.10 1.88 5.25 -62.56 -0.33 1.55 16 17 H 0.12 2.08 8.03 -51.93 -0.42 1.67 16 18 C 0.17 4.03 4.77 -1.69 -0.01 4.02 16 19 N -0.60 -13.84 3.02 -156.35 -0.47 -14.32 16 20 C -0.23 -6.02 10.37 -15.06 -0.16 -6.17 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -26.36 10.56 55.49 0.59 -25.77 16 24 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.12 1.74 5.97 -51.93 -0.31 1.43 16 35 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.17 2.23 4.75 -52.49 -0.25 1.98 16 37 H 0.08 1.43 7.09 -51.93 -0.37 1.06 16 38 H 0.06 0.82 7.10 -51.93 -0.37 0.45 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.48 7.48 -51.93 -0.39 1.09 16 42 H 0.05 1.30 7.66 -51.93 -0.40 0.90 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -31.31 344.30 -8.38 -39.69 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.27 Total: 4.38 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.17 Total: 5.05 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.18 Total: -59.51 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.31 -8.38 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032425994.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.350 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds