Wall clock time and date at job start Tue Mar 31 2020 09:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99669 * 2 1 4 4 C 1.39025 * 120.00053 * 180.02562 * 2 1 3 5 5 C 1.39117 * 119.64669 * 11.16939 * 4 2 1 6 6 C 1.39497 * 118.93130 * 180.02562 * 5 4 2 7 7 C 1.48169 * 120.88217 * 180.02562 * 6 5 4 8 8 O 1.21513 * 119.99829 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99889 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.88958 * 31.11330 * 10 9 7 12 12 C 1.55154 * 111.00718 * 154.99588 * 10 9 7 13 13 C 1.54324 * 102.93977 * 82.57020 * 12 10 9 14 14 N 1.47015 * 107.27306 * 22.19800 * 13 12 10 15 15 C 1.36938 * 125.65255 * 181.01890 * 14 13 12 16 16 H 1.08000 * 120.00224 * 178.65870 * 15 14 13 17 17 C 1.38814 * 119.99639 * 358.66462 * 15 14 13 18 18 N 1.31612 * 119.99817 * 161.49020 * 17 15 14 19 19 Si 1.86798 * 119.99841 * 341.48833 * 17 15 14 20 20 H 1.48508 * 109.46790 * 186.07928 * 19 17 15 21 21 H 1.48499 * 109.47616 * 306.08263 * 19 17 15 22 22 H 1.48503 * 109.47257 * 66.08706 * 19 17 15 23 23 C 1.47429 * 108.70095 * 1.28639 * 14 13 12 24 24 C 1.40016 * 118.23818 * 0.28003 * 6 5 4 25 25 C 1.37956 * 119.17038 * 359.45101 * 24 6 5 26 26 N 1.31916 * 120.99921 * 0.55962 * 25 24 6 27 27 H 1.08994 * 109.46617 * 185.82996 * 1 2 3 28 28 H 1.08998 * 109.47087 * 305.83069 * 1 2 3 29 29 H 1.09000 * 109.47360 * 65.83201 * 1 2 3 30 30 H 1.09001 * 109.47389 * 269.99834 * 3 2 1 31 31 H 1.08998 * 109.47406 * 30.00177 * 3 2 1 32 32 H 1.09006 * 109.47191 * 150.00315 * 3 2 1 33 33 H 1.08004 * 120.53596 * 0.02562 * 5 4 2 34 34 H 0.96995 * 119.99949 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.71795 * 324.21255 * 12 10 9 36 36 H 1.08999 * 110.72577 * 200.93655 * 12 10 9 37 37 H 1.09002 * 109.88508 * 262.77547 * 13 12 10 38 38 H 1.09008 * 110.00693 * 141.68550 * 13 12 10 39 39 H 0.97002 * 120.00203 * 5.01517 * 18 17 15 40 40 H 1.09001 * 110.37035 * 94.48397 * 23 14 13 41 41 H 1.09007 * 110.36534 * 216.80678 * 23 14 13 42 42 H 1.07995 * 120.41546 * 179.72451 * 24 6 5 43 43 H 1.08001 * 119.49737 * 180.28194 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4771 -2.3929 -0.2353 6 6 2.1892 -3.5924 -0.2319 7 6 1.5052 -4.8836 -0.4775 8 8 0.3083 -4.9071 -0.6859 9 7 2.2106 -6.0320 -0.4697 10 6 1.5345 -7.3086 -0.7130 11 1 0.6849 -7.1769 -1.3832 12 6 2.5245 -8.3648 -1.2712 13 6 3.2090 -8.9040 0.0025 14 7 2.3099 -8.6264 1.1321 15 6 2.5588 -8.9305 2.4439 16 1 1.8408 -8.6646 3.2055 17 6 3.7342 -9.5804 2.7946 18 7 4.1539 -9.5539 4.0417 19 14 4.7201 -10.4927 1.4964 20 1 5.8415 -11.2182 2.1457 21 1 3.8402 -11.4642 0.7985 22 1 5.2626 -9.5210 0.5132 23 6 1.0929 -7.9721 0.6179 24 6 3.5666 -3.5444 0.0151 25 6 4.1684 -2.3223 0.2332 26 7 3.4644 -1.2068 0.2228 27 1 -0.3632 -1.0223 0.1044 28 1 -0.3633 0.6016 0.8332 29 1 -0.3634 0.4207 -0.9376 30 1 2.3792 1.5835 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1500 1.1385 0.5138 33 1 0.4125 -2.3874 -0.4172 34 1 3.1661 -6.0132 -0.3037 35 1 3.2541 -7.8978 -1.9328 36 1 1.9884 -9.1612 -1.7874 37 1 4.1620 -8.3972 0.1541 38 1 3.3706 -9.9783 -0.0872 39 1 3.6065 -9.1431 4.7291 40 1 0.3129 -8.7113 0.4355 41 1 0.7431 -7.2157 1.3205 42 1 4.1513 -4.4522 0.0302 43 1 5.2313 -2.2787 0.4197 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015786355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:22 Heat of formation + Delta-G solvation = 60.919232 kcal Electronic energy + Delta-G solvation = -24792.728310 eV Core-core repulsion = 21260.854705 eV Total energy + Delta-G solvation = -3531.873605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72225 -39.42674 -37.61034 -36.63499 -34.02297 -32.81020 -31.96795 -30.57547 -29.49851 -28.58320 -28.08530 -25.58185 -24.54410 -23.57549 -22.33167 -21.02410 -20.62745 -19.81058 -18.33673 -17.44363 -16.95052 -16.09282 -16.04568 -15.67021 -15.57878 -15.32253 -14.71333 -14.59910 -14.30741 -14.14735 -13.70154 -13.50746 -13.35674 -12.91051 -12.79606 -12.63602 -12.41195 -12.35345 -11.84404 -11.74062 -11.41544 -11.18959 -11.01604 -10.86440 -10.26808 -10.15486 -9.94845 -9.83800 -9.52958 -9.47286 -9.02456 -8.93265 -8.59860 -7.76231 -7.04744 -6.31556 -3.18789 0.75187 1.18009 2.66670 2.97809 3.23362 3.34496 3.46336 3.67258 3.86807 4.35233 4.58167 4.59046 4.72395 4.90580 4.94216 4.97183 4.99427 5.06368 5.08829 5.15196 5.29622 5.37127 5.38551 5.41022 5.54479 5.59772 5.61651 5.71967 5.82036 6.00469 6.05789 6.09841 6.17283 6.30793 6.41330 6.52290 6.67287 6.67709 6.80802 7.12142 7.59385 7.67847 7.94269 8.27171 8.32587 9.05071 9.56636 10.22651 11.19435 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.003454 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.639318 B = 8103.883549 C = 8587.564454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.620 5.620 3 C 0.100 3.900 4 C 0.395 3.605 5 C -0.181 4.181 6 C -0.041 4.041 7 C 0.559 3.441 8 O -0.539 6.539 9 N -0.695 5.695 10 C 0.127 3.873 11 H 0.099 0.901 12 C -0.136 4.136 13 C 0.096 3.904 14 N -0.611 5.611 15 C -0.322 4.322 16 H 0.078 0.922 17 C -0.027 4.027 18 N -0.928 5.928 19 Si 1.075 2.925 20 H -0.302 1.302 21 H -0.299 1.299 22 H -0.283 1.283 23 C 0.127 3.873 24 C -0.200 4.200 25 C 0.147 3.853 26 N -0.530 5.530 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.138 0.862 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.969 17.815 -12.674 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.336 5.336 3 C -0.043 4.043 4 C 0.161 3.839 5 C -0.207 4.207 6 C -0.052 4.052 7 C 0.345 3.655 8 O -0.417 6.417 9 N -0.346 5.346 10 C 0.022 3.978 11 H 0.117 0.883 12 C -0.174 4.174 13 C -0.028 4.028 14 N -0.339 5.339 15 C -0.450 4.450 16 H 0.095 0.905 17 C -0.226 4.226 18 N -0.570 5.570 19 Si 0.910 3.090 20 H -0.231 1.231 21 H -0.228 1.228 22 H -0.211 1.211 23 C 0.000 4.000 24 C -0.223 4.223 25 C -0.010 4.010 26 N -0.248 5.248 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.156 0.844 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.109 17.851 -12.814 22.075 hybrid contribution -1.473 -0.074 0.338 1.513 sum -3.581 17.778 -12.476 22.012 Atomic orbital electron populations 1.21791 0.78307 1.03653 1.01483 1.46132 1.05117 1.02857 1.79461 1.21542 0.97790 0.83858 1.01118 1.18195 0.88503 0.85791 0.91366 1.21536 1.01812 0.90550 1.06797 1.20110 0.93821 0.93445 0.97831 1.18150 0.86643 0.83596 0.77158 1.90738 1.14255 1.87298 1.49384 1.45717 1.12404 1.05655 1.70783 1.22235 0.95565 0.81877 0.98149 0.88311 1.22908 0.98653 0.98004 0.97880 1.22156 0.95088 0.98223 0.87355 1.44837 1.15487 1.70504 1.03104 1.20134 1.06698 1.37118 0.81002 0.90462 1.25762 0.95970 0.99676 1.01190 1.70910 1.36310 1.48515 1.01290 0.83808 0.75324 0.76206 0.73667 1.23081 1.22832 1.21064 1.21996 0.90179 0.94915 0.92939 1.22072 0.94279 1.00135 1.05815 1.22370 0.99566 0.86376 0.92723 1.67000 1.06443 1.32136 1.19220 0.90054 0.91997 0.92446 0.93629 0.91936 0.90087 0.83722 0.76039 0.90629 0.89838 0.93187 0.94713 0.92909 0.94890 0.93285 0.84427 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.52 59.85 0.63 1.34 16 2 N -0.62 -6.46 3.39 -189.68 -0.64 -7.11 16 3 C 0.10 0.83 10.59 59.85 0.63 1.46 16 4 C 0.40 5.07 7.33 -155.08 -1.14 3.93 16 5 C -0.18 -2.45 8.80 -38.79 -0.34 -2.79 16 6 C -0.04 -0.58 5.90 -104.68 -0.62 -1.20 16 7 C 0.56 9.05 7.80 -12.18 -0.09 8.95 16 8 O -0.54 -10.06 16.08 5.35 0.09 -9.97 16 9 N -0.70 -10.84 5.16 -52.46 -0.27 -11.11 16 10 C 0.13 2.09 3.43 -65.67 -0.23 1.86 16 11 H 0.10 1.54 7.54 -51.93 -0.39 1.15 16 12 C -0.14 -2.08 6.55 -24.90 -0.16 -2.24 16 13 C 0.10 1.97 4.62 -3.07 -0.01 1.96 16 14 N -0.61 -14.61 3.37 -169.93 -0.57 -15.18 16 15 C -0.32 -9.19 10.56 -15.06 -0.16 -9.35 16 16 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 17 C -0.03 -0.79 5.50 -17.43 -0.10 -0.88 16 18 N -0.93 -29.10 13.70 55.49 0.76 -28.34 16 19 Si 1.08 26.24 24.52 -169.99 -4.17 22.07 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 21 H -0.30 -7.07 6.68 56.52 0.38 -6.69 16 22 H -0.28 -6.13 5.26 56.52 0.30 -5.83 16 23 C 0.13 2.59 6.95 -2.41 -0.02 2.57 16 24 C -0.20 -2.47 9.61 -39.02 -0.37 -2.84 16 25 C 0.15 1.70 11.16 -17.62 -0.20 1.50 16 26 N -0.53 -6.83 9.05 -12.48 -0.11 -6.95 16 27 H 0.08 0.68 5.53 -51.93 -0.29 0.39 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.08 0.75 7.24 -51.93 -0.38 0.38 16 33 H 0.15 1.86 5.67 -52.48 -0.30 1.57 16 34 H 0.40 5.80 6.81 -40.82 -0.28 5.52 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.05 5.99 -51.93 -0.31 0.74 16 38 H 0.04 0.76 4.38 -51.92 -0.23 0.53 16 39 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.14 1.49 6.53 -52.49 -0.34 1.15 16 43 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -34.89 343.22 -7.94 -42.83 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.02 Total: 4.32 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.17 Total: 4.26 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -0.84 Total: -68.68 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.17 Total: 22.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.89 -7.94 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015786355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.745 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds