Wall clock time and date at job start Tue Mar 31 2020 08:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47070 * 2 1 4 4 C 1.34944 * 126.03534 * 125.00048 * 3 2 1 5 5 C 1.35322 * 107.74487 * 180.02562 * 4 3 2 6 6 C 1.39864 * 107.92000 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.90054 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47190 * 124.99849 * 7 6 5 9 9 O 1.21284 * 120.00054 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.47877 * 126.94119 * 359.97438 * 10 8 7 12 12 C 1.56022 * 105.10059 * 182.02234 * 11 10 8 13 13 H 1.09002 * 116.24483 * 158.83928 * 12 11 10 14 14 C 1.57076 * 99.60872 * 32.80629 * 12 11 10 15 15 C 1.49292 * 126.94977 * 180.02562 * 10 8 7 16 16 H 1.08998 * 116.78409 * 16.29067 * 15 10 8 17 17 C 1.56014 * 104.09364 * 246.67948 * 15 10 8 18 18 N 1.47874 * 105.19097 * 288.71484 * 17 15 10 19 19 C 1.36935 * 126.94185 * 182.02458 * 18 17 15 20 20 H 1.08008 * 119.99541 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00389 * 0.02562 * 19 18 17 22 22 N 1.31620 * 119.99734 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00037 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47015 * 60.00301 * 23 21 19 25 25 H 1.48506 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47239 * 299.99858 * 23 21 19 27 27 N 1.30842 * 108.20206 * 0.26641 * 6 5 4 28 28 H 1.08994 * 109.47470 * 299.99564 * 1 2 3 29 29 H 1.09000 * 109.47286 * 59.99877 * 1 2 3 30 30 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47412 * 240.00099 * 2 1 3 32 32 H 1.09000 * 109.47286 * 120.00123 * 2 1 3 33 33 H 1.07997 * 126.12987 * 0.03392 * 4 3 2 34 34 H 1.07998 * 126.03998 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47139 * 5.00166 * 7 6 5 36 36 H 1.08995 * 109.47482 * 244.99970 * 7 6 5 37 37 H 1.08996 * 110.31139 * 63.11404 * 11 10 8 38 38 H 1.08994 * 110.40066 * 300.97085 * 11 10 8 39 39 H 1.09007 * 112.36782 * 191.71038 * 14 12 11 40 40 H 1.09001 * 112.37207 * 64.27518 * 14 12 11 41 41 H 1.09002 * 110.31668 * 47.67269 * 17 15 10 42 42 H 1.09004 * 110.31589 * 169.75796 * 17 15 10 43 43 H 0.97004 * 119.99572 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0712 3.2138 0.5463 6 6 2.3120 3.4726 -0.5995 7 6 2.2349 4.7885 -1.3298 8 6 2.5923 4.5805 -2.7790 9 8 2.8807 3.4726 -3.1794 10 7 2.5915 5.6255 -3.6301 11 6 2.2663 7.0321 -3.3100 12 6 2.3735 7.7931 -4.6678 13 1 1.8409 8.7420 -4.7319 14 6 1.9010 6.6565 -5.6435 15 6 2.9176 5.5968 -5.0867 16 1 2.9165 4.6204 -5.5711 17 6 4.2381 6.4203 -5.1966 18 7 3.8407 7.8239 -4.9547 19 6 4.6526 8.9262 -4.9864 20 1 4.2412 9.9056 -4.7907 21 6 6.0040 8.7850 -5.2699 22 7 6.5051 7.5916 -5.5088 23 14 7.1115 10.2887 -5.3124 24 1 7.0911 10.9561 -3.9860 25 1 8.4997 9.8721 -5.6362 26 1 6.6242 11.2332 -6.3495 27 7 1.6762 2.3763 -0.9248 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3191 1.4125 1.7357 34 1 3.7044 3.9205 1.0620 35 1 2.9336 5.4946 -0.8811 36 1 1.2220 5.1848 -1.2587 37 1 2.9836 7.4327 -2.5938 38 1 1.2540 7.1072 -2.9130 39 1 2.0888 6.9024 -6.6887 40 1 0.8643 6.3667 -5.4717 41 1 4.9520 6.0934 -4.4405 42 1 4.6680 6.3150 -6.1927 43 1 7.4495 7.4930 -5.7073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032412607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:46 Heat of formation + Delta-G solvation = 104.963338 kcal Electronic energy + Delta-G solvation = -24987.268542 eV Core-core repulsion = 21457.304833 eV Total energy + Delta-G solvation = -3529.963709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -41.13506 -39.88592 -37.70395 -34.70035 -33.55195 -31.90737 -31.11846 -29.69268 -29.06019 -28.51525 -27.69778 -25.14187 -23.74305 -23.09401 -21.07781 -20.91357 -19.79986 -19.38847 -18.26050 -17.10008 -17.01272 -16.21899 -15.62618 -15.40397 -15.07736 -14.60337 -14.30830 -13.91018 -13.83767 -13.53815 -13.27750 -13.01041 -12.60726 -12.44057 -12.20504 -12.07870 -11.92983 -11.77478 -11.58941 -11.49064 -11.25423 -10.95669 -10.80774 -10.73314 -10.54173 -10.38707 -10.21732 -10.05190 -9.59541 -9.36041 -9.07838 -8.66919 -8.45968 -7.88667 -6.89334 -5.73437 -3.08083 1.99659 2.52538 2.84212 3.22138 3.39302 3.43422 3.45603 3.58479 4.33492 4.44305 4.71972 4.76957 4.83369 4.94590 5.00024 5.22454 5.24267 5.29449 5.37399 5.42863 5.54903 5.57546 5.60387 5.69042 5.76772 5.84275 5.86725 5.91453 5.98707 6.10772 6.24259 6.35292 6.47009 6.56323 6.64913 6.71633 6.79276 7.08570 7.46003 7.54844 7.75837 7.87121 8.12936 8.22104 8.75488 9.13192 9.74049 10.44073 11.38396 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.003235 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.950688 B = 8654.289290 C = 9127.147673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.045 3.955 5 C -0.265 4.265 6 C 0.088 3.912 7 C -0.055 4.055 8 C 0.531 3.469 9 O -0.540 6.540 10 N -0.609 5.609 11 C 0.083 3.917 12 C 0.140 3.860 13 H 0.106 0.894 14 C -0.152 4.152 15 C 0.100 3.900 16 H 0.112 0.888 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.260 5.260 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 -9.898 12.046 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.100 4.100 5 C -0.294 4.294 6 C -0.079 4.079 7 C -0.096 4.096 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.343 5.343 11 C -0.042 4.042 12 C 0.031 3.969 13 H 0.124 0.876 14 C -0.192 4.192 15 C -0.003 4.003 16 H 0.130 0.870 17 C 0.049 3.951 18 N -0.322 5.322 19 C -0.359 4.359 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.082 5.082 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.287 -11.221 11.052 19.976 hybrid contribution 1.428 1.094 0.741 1.945 sum -10.859 -10.127 11.793 18.962 Atomic orbital electron populations 1.22044 0.93966 1.02607 1.03600 1.21618 0.95957 0.77842 1.03496 1.48718 1.35879 1.10055 1.21300 1.22443 0.96323 0.94817 0.96448 1.21358 1.09495 0.96841 1.01722 1.21587 0.96966 0.94238 0.95129 1.19990 1.04386 0.92868 0.92378 1.19833 0.77895 0.83622 0.86830 1.90696 1.49197 1.23622 1.78248 1.49174 1.67349 1.07801 1.09991 1.23280 0.98564 0.81444 1.00920 1.23200 0.87515 0.95543 0.90603 0.87648 1.24156 0.97361 0.97369 1.00295 1.24258 0.97912 0.98641 0.79483 0.87046 1.21914 0.90160 0.82233 1.00746 1.45278 1.01566 1.03305 1.82022 1.18997 0.89232 0.85823 1.41871 0.90217 1.24822 0.96879 0.96814 1.01799 1.69919 1.12871 1.20407 1.53381 0.86196 0.79916 0.81778 0.77806 1.21166 1.21674 1.21150 1.77385 1.23338 0.96196 1.11298 0.92239 0.90964 0.90921 0.89885 0.88958 0.81287 0.83604 0.87243 0.87862 0.91041 0.92813 0.89897 0.91690 0.93524 0.92780 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.09 37.16 0.38 -0.96 16 2 C 0.13 1.18 7.23 -4.04 -0.03 1.15 16 3 N -0.38 -4.96 3.68 -61.36 -0.23 -5.19 16 4 C 0.04 0.53 11.45 -17.22 -0.20 0.33 16 5 C -0.26 -3.57 10.72 -40.01 -0.43 -4.00 16 6 C 0.09 1.41 6.01 -82.41 -0.50 0.92 16 7 C -0.05 -0.82 5.56 -29.04 -0.16 -0.98 16 8 C 0.53 10.25 7.89 -10.99 -0.09 10.17 16 9 O -0.54 -12.45 15.93 5.55 0.09 -12.37 16 10 N -0.61 -11.53 2.95 -156.80 -0.46 -11.99 16 11 C 0.08 1.41 6.01 -1.67 -0.01 1.40 16 12 C 0.14 2.60 5.54 -62.42 -0.35 2.25 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C -0.15 -2.64 6.81 -22.32 -0.15 -2.79 16 15 C 0.10 2.00 5.23 -62.57 -0.33 1.67 16 16 H 0.11 2.22 8.08 -51.93 -0.42 1.80 16 17 C 0.17 4.27 4.76 -1.68 -0.01 4.26 16 18 N -0.60 -14.42 3.03 -156.15 -0.47 -14.90 16 19 C -0.23 -6.15 10.38 -15.06 -0.16 -6.31 16 20 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -27.01 10.56 55.49 0.59 -26.42 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 N -0.26 -4.40 11.77 33.67 0.40 -4.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.46 8.12 -51.93 -0.42 1.04 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.31 7.68 -51.93 -0.40 0.92 16 42 H 0.05 1.46 7.45 -51.93 -0.39 1.07 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -35.38 355.04 -8.55 -43.93 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.67 Total: 2.04 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -2.12 Total: 6.82 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.18 Total: -62.50 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.38 -8.55 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032412607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.895 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds