Wall clock time and date at job start Tue Mar 31 2020 09:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00522 * 2 1 4 4 O 1.21273 * 120.00322 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.99748 * 359.97438 * 3 2 1 6 6 H 1.09003 * 115.55002 * 34.41737 * 5 3 2 7 7 C 1.53006 * 117.49717 * 248.75285 * 5 3 2 8 8 C 1.52995 * 117.49971 * 180.09214 * 5 3 2 9 9 H 1.09001 * 117.49634 * 359.97438 * 8 5 3 10 10 C 1.50704 * 117.49952 * 214.97846 * 8 5 3 11 11 C 1.34674 * 126.58829 * 325.02516 * 10 8 5 12 12 N 1.34128 * 108.01831 * 179.97438 * 11 10 8 13 13 C 1.30499 * 109.25672 * 359.97438 * 12 11 10 14 14 N 1.35041 * 108.69979 * 359.76710 * 13 12 11 15 15 H 0.96999 * 126.39742 * 180.26353 * 14 13 12 16 16 C 1.46507 * 119.99937 * 179.97438 * 2 1 3 17 17 H 1.08996 * 110.88727 * 183.88222 * 16 2 1 18 18 C 1.55160 * 110.99895 * 60.00573 * 16 2 1 19 19 C 1.54333 * 102.93931 * 206.42530 * 18 16 2 20 20 N 1.47026 * 107.26909 * 22.18897 * 19 18 16 21 21 C 1.36933 * 125.64286 * 181.02346 * 20 19 18 22 22 H 1.08001 * 120.00060 * 185.86949 * 21 20 19 23 23 C 1.38814 * 120.00430 * 5.86301 * 21 20 19 24 24 N 1.31622 * 119.99678 * 6.99355 * 23 21 20 25 25 Si 1.86793 * 120.00131 * 187.26326 * 23 21 20 26 26 H 1.48500 * 109.47388 * 264.73901 * 25 23 21 27 27 H 1.48500 * 109.47209 * 24.74375 * 25 23 21 28 28 H 1.48503 * 109.47260 * 144.74005 * 25 23 21 29 29 C 1.47425 * 108.70519 * 1.29192 * 20 19 18 30 30 H 1.09000 * 109.47393 * 270.00726 * 1 2 3 31 31 H 1.09005 * 109.46887 * 30.00271 * 1 2 3 32 32 H 1.09000 * 109.47269 * 149.99941 * 1 2 3 33 33 H 1.09003 * 117.49686 * 359.97438 * 7 5 3 34 34 H 1.08997 * 117.50013 * 144.99801 * 7 5 3 35 35 H 1.07996 * 125.98660 * 359.95523 * 11 10 8 36 36 H 1.07996 * 125.64777 * 180.02562 * 13 12 11 37 37 H 1.08997 * 110.72527 * 88.06339 * 18 16 2 38 38 H 1.09000 * 110.87058 * 324.85427 * 18 16 2 39 39 H 1.08996 * 109.87661 * 262.77372 * 19 18 16 40 40 H 1.09000 * 110.00874 * 141.68151 * 19 18 16 41 41 H 0.96998 * 119.99721 * 180.27229 * 24 23 21 42 42 H 1.09002 * 110.36657 * 94.47797 * 29 20 19 43 43 H 1.08997 * 110.36285 * 216.80060 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.4476 2.4740 0.5549 7 6 1.4587 3.3297 -1.2657 8 6 2.2076 3.7626 -0.0027 9 1 3.2934 3.6675 -0.0033 10 6 1.6585 4.9388 0.7629 11 6 0.3611 5.2733 0.8987 12 7 0.2948 6.3807 1.6526 13 6 1.5018 6.7448 1.9896 14 7 2.3822 5.8687 1.4595 15 1 3.3473 5.8947 1.5531 16 6 2.1975 -1.2688 0.0006 17 1 3.2716 -1.0973 0.0694 18 6 1.8483 -2.1130 -1.2536 19 6 2.1062 -3.5589 -0.7797 20 7 2.0263 -3.5578 0.6884 21 6 2.2159 -4.6453 1.4986 22 1 2.0427 -4.5636 2.5615 23 6 2.6306 -5.8529 0.9539 24 7 2.9740 -5.9191 -0.3150 25 14 2.6943 -7.3855 2.0199 26 1 4.0703 -7.5639 2.5488 27 1 1.7437 -7.2412 3.1516 28 1 2.3192 -8.5701 1.2066 29 6 1.7019 -2.1936 1.1432 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 2.0522 2.9500 -2.0974 34 1 0.5692 3.8955 -1.5424 35 1 -0.4787 4.7430 0.4747 36 1 1.7544 7.6021 2.5958 37 1 2.5043 -1.8571 -2.0856 38 1 0.8033 -1.9793 -1.5330 39 1 3.0979 -3.8815 -1.0968 40 1 1.3499 -4.2269 -1.1917 41 1 3.2600 -6.7637 -0.6966 42 1 0.6261 -2.0857 1.2821 43 1 2.2295 -1.9672 2.0698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033164521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:23 Heat of formation + Delta-G solvation = 85.322932 kcal Electronic energy + Delta-G solvation = -24478.062987 eV Core-core repulsion = 20947.247606 eV Total energy + Delta-G solvation = -3530.815381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37378 -40.15670 -37.82914 -36.42122 -34.82072 -32.78929 -32.12892 -29.64632 -29.21292 -27.68971 -26.71958 -25.01776 -23.84834 -23.46756 -21.90613 -20.83928 -20.15266 -20.06089 -18.69611 -18.45934 -17.11993 -16.96644 -16.13196 -15.26200 -15.22218 -14.79401 -14.63432 -14.54514 -14.14330 -13.98791 -13.78516 -13.10438 -12.96662 -12.65046 -12.44588 -12.35349 -12.21639 -12.00233 -11.78686 -11.27942 -10.98343 -10.92866 -10.83453 -10.74779 -10.30127 -10.29538 -10.26100 -10.09762 -9.87460 -9.76854 -9.63938 -8.66128 -8.54533 -8.37467 -6.85357 -5.71769 -3.08872 1.61003 2.50397 2.71919 2.84284 3.10918 3.39434 3.44839 3.46933 3.74442 4.18957 4.44203 4.44821 4.49734 4.56487 4.78226 4.85000 5.05421 5.19254 5.22401 5.31370 5.36803 5.42767 5.54496 5.56473 5.61814 5.68982 5.69922 5.74550 5.87636 6.00763 6.17607 6.28450 6.39982 6.47866 6.56061 6.67189 6.93321 7.04186 7.44017 7.55515 7.63141 7.74619 7.80527 8.23132 8.28364 9.18408 9.79178 10.44183 11.37484 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.002603 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.224204 B =10752.815254 C =10992.398296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.595 5.595 3 C 0.541 3.459 4 O -0.544 6.544 5 C -0.169 4.169 6 H 0.129 0.871 7 C -0.131 4.131 8 C -0.059 4.059 9 H 0.125 0.875 10 C 0.014 3.986 11 C -0.024 4.024 12 N -0.493 5.493 13 C 0.182 3.818 14 N -0.564 5.564 15 H 0.421 0.579 16 C 0.123 3.877 17 H 0.106 0.894 18 C -0.151 4.151 19 C 0.173 3.827 20 N -0.602 5.602 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.281 1.281 28 H -0.290 1.290 29 C 0.131 3.869 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.209 0.791 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.253 0.747 42 H 0.023 0.977 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 22.895 -1.165 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.326 5.326 3 C 0.329 3.671 4 O -0.422 6.422 5 C -0.191 4.191 6 H 0.147 0.853 7 C -0.169 4.169 8 C -0.079 4.079 9 H 0.143 0.857 10 C -0.101 4.101 11 C -0.172 4.172 12 N -0.212 5.212 13 C -0.101 4.101 14 N -0.167 5.167 15 H 0.259 0.741 16 C 0.019 3.981 17 H 0.124 0.876 18 C -0.190 4.190 19 C 0.048 3.952 20 N -0.328 5.328 21 C -0.358 4.358 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.216 1.216 29 C 0.004 3.996 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.186 0.814 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.542 23.048 -0.954 23.511 hybrid contribution 1.114 -1.293 0.451 1.765 sum -3.428 21.756 -0.502 22.030 Atomic orbital electron populations 1.21808 0.79706 1.03248 1.02027 1.47719 1.07042 1.05800 1.72080 1.19525 0.87260 0.84232 0.76099 1.90683 1.13843 1.87191 1.50518 1.22438 1.01970 0.89822 1.04852 0.85277 1.23151 1.02698 1.00285 0.90754 1.20150 0.99110 0.89508 0.99161 0.85719 1.20335 0.92279 0.94916 1.02613 1.22033 0.94788 0.96946 1.03425 1.70290 1.22369 1.13442 1.15074 1.24979 0.84523 0.97846 1.02777 1.43202 1.10777 1.22467 1.40262 0.74108 1.22540 0.97421 0.80908 0.97197 0.87564 1.23208 1.00449 0.98599 0.96760 1.21230 1.01521 0.88988 0.83501 1.44390 1.82992 1.03252 1.02189 1.19047 1.38864 0.87391 0.90450 0.90423 1.24830 1.00958 0.98147 0.96480 1.69954 1.50098 1.24900 1.11708 0.86091 0.77698 0.82764 0.79147 1.21598 1.20622 1.21610 1.21803 0.97078 0.85920 0.94820 0.92434 0.91129 0.90287 0.87380 0.87122 0.81426 0.77483 0.91903 0.92148 0.91689 0.95028 0.93712 0.95905 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 8.61 59.84 0.52 1.34 16 2 N -0.60 -8.74 2.91 -171.34 -0.50 -9.24 16 3 C 0.54 7.89 7.46 -10.98 -0.08 7.81 16 4 O -0.54 -9.98 15.64 5.56 0.09 -9.89 16 5 C -0.17 -1.71 4.32 -91.77 -0.40 -2.11 16 6 H 0.13 1.11 7.10 -51.93 -0.37 0.74 16 7 C -0.13 -1.06 9.76 -26.69 -0.26 -1.32 16 8 C -0.06 -0.56 5.85 -91.73 -0.54 -1.10 16 9 H 0.12 1.30 7.67 -51.93 -0.40 0.91 16 10 C 0.01 0.13 6.92 -81.60 -0.56 -0.43 16 11 C -0.02 -0.24 10.94 -17.81 -0.19 -0.44 16 12 N -0.49 -5.45 11.25 -14.67 -0.17 -5.62 16 13 C 0.18 1.44 13.04 -90.38 -1.18 0.26 16 14 N -0.56 -4.17 6.15 -10.30 -0.06 -4.23 16 15 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 16 C 0.12 2.28 3.47 -65.66 -0.23 2.05 16 17 H 0.11 2.23 7.02 -51.93 -0.36 1.86 16 18 C -0.15 -2.82 6.50 -24.89 -0.16 -2.98 16 19 C 0.17 4.17 5.45 -3.06 -0.02 4.15 16 20 N -0.60 -15.41 3.39 -169.93 -0.58 -15.98 16 21 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 22 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 23 C -0.01 -0.22 5.45 -17.43 -0.10 -0.31 16 24 N -0.92 -27.01 10.45 55.49 0.58 -26.43 16 25 Si 0.91 22.12 29.56 -169.99 -5.02 17.09 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 C 0.13 2.74 6.79 -2.41 -0.02 2.72 16 30 H 0.06 0.60 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.57 6.64 -51.93 -0.34 0.22 16 32 H 0.08 0.91 6.42 -51.93 -0.33 0.58 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.69 7.95 -51.93 -0.41 0.27 16 35 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.01 6.41 -51.93 -0.33 0.67 16 39 H 0.07 1.76 6.89 -51.93 -0.36 1.41 16 40 H 0.03 0.82 7.96 -51.93 -0.41 0.41 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.46 7.00 -51.93 -0.36 0.09 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -35.15 350.29 -9.89 -45.04 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.14 Total: 0.92 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -3.37 Total: 3.07 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.72 Total: -61.51 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.15 -9.89 -45.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033164521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.360 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds