Wall clock time and date at job start Tue Mar 31 2020 08:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34253 * 125.75390 * 2 1 4 4 C 1.38046 * 107.41549 * 180.02562 * 3 2 1 5 5 C 1.47430 * 126.41317 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99916 * 331.21360 * 5 4 3 7 7 N 1.34777 * 120.00058 * 151.21961 * 5 4 3 8 8 C 1.46530 * 120.97333 * 353.69029 * 7 5 4 9 9 C 1.51789 * 110.13013 * 233.77913 * 8 7 5 10 10 C 1.49512 * 115.07182 * 318.38528 * 9 8 7 11 11 H 1.09000 * 105.19092 * 156.93406 * 10 9 8 12 12 C 1.52642 * 117.06598 * 40.17545 * 10 9 8 13 13 H 1.08994 * 112.16458 * 83.01325 * 12 10 9 14 14 C 1.56111 * 101.81645 * 203.13670 * 12 10 9 15 15 C 1.55100 * 101.08551 * 37.63109 * 14 12 10 16 16 N 1.46264 * 114.16812 * 272.11165 * 10 9 8 17 17 C 1.36935 * 125.95902 * 315.59719 * 16 10 9 18 18 H 1.07999 * 120.00379 * 349.39011 * 17 16 10 19 19 C 1.38814 * 119.99962 * 169.39641 * 17 16 10 20 20 N 1.31626 * 119.99441 * 350.01525 * 19 17 16 21 21 Si 1.86793 * 120.00224 * 170.01779 * 19 17 16 22 22 H 1.48497 * 109.47100 * 265.32616 * 21 19 17 23 23 H 1.48504 * 109.47282 * 145.32426 * 21 19 17 24 24 H 1.48506 * 109.47213 * 25.32390 * 21 19 17 25 25 C 1.46171 * 120.96444 * 174.01569 * 7 5 4 26 26 C 1.41289 * 107.17006 * 0.24279 * 4 3 2 27 27 N 1.30444 * 108.02285 * 359.59106 * 26 4 3 28 28 H 1.08998 * 109.46975 * 89.99743 * 1 2 3 29 29 H 1.08993 * 109.47004 * 210.00218 * 1 2 3 30 30 H 1.09003 * 109.46221 * 329.99590 * 1 2 3 31 31 H 1.07999 * 126.29162 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.35616 * 113.58173 * 8 7 5 33 33 H 1.09000 * 109.36327 * 353.98301 * 8 7 5 34 34 H 1.09001 * 108.36273 * 196.93283 * 9 8 7 35 35 H 1.08996 * 108.35774 * 79.83371 * 9 8 7 36 36 H 1.09007 * 111.10037 * 279.68325 * 14 12 10 37 37 H 1.09001 * 111.10242 * 155.58473 * 14 12 10 38 38 H 1.08997 * 110.35178 * 204.07941 * 15 14 12 39 39 H 1.09003 * 110.43898 * 81.84316 * 15 14 12 40 40 H 0.97000 * 119.99404 * 180.02562 * 20 19 17 41 41 H 1.09006 * 109.50981 * 0.99313 * 25 7 5 42 42 H 1.08997 * 109.04052 * 241.09453 * 25 7 5 43 43 H 1.08000 * 125.98521 * 179.73857 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5060 -0.0013 6 8 4.7275 2.6106 -0.5086 7 7 5.9049 1.0596 0.5601 8 6 5.9379 -0.2069 1.2964 9 6 6.5101 0.0110 2.6852 10 6 7.6913 0.9255 2.7475 11 1 7.7102 1.2984 3.7715 12 6 7.6556 2.1676 1.8609 13 1 7.0977 2.9840 2.3193 14 6 9.1739 2.4999 1.7149 15 6 9.7832 1.0766 1.6225 16 7 8.9773 0.2569 2.5512 17 6 9.3646 -0.9253 3.1235 18 1 8.7727 -1.3618 3.9144 19 6 10.5181 -1.5625 2.6873 20 7 11.1311 -1.1426 1.6008 21 14 11.2002 -3.0160 3.6420 22 1 12.2384 -2.5411 4.5916 23 1 11.8023 -3.9905 2.6969 24 1 10.1021 -3.6719 4.3966 25 6 7.1441 1.8282 0.4583 26 6 3.5311 -0.7574 -0.0067 27 7 2.2827 -1.1356 -0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.9166 2.1169 0.0004 32 1 6.5595 -0.9220 0.7575 33 1 4.9257 -0.6024 1.3806 34 1 6.8035 -0.9570 3.0915 35 1 5.7245 0.4211 3.3198 36 1 9.5458 3.0296 2.5920 37 1 9.3654 3.0684 0.8048 38 1 10.8268 1.0898 1.9366 39 1 9.6987 0.6916 0.6062 40 1 11.9369 -1.5881 1.2958 41 1 6.9569 2.7492 -0.0940 42 1 7.8900 1.2322 -0.0673 43 1 4.3919 -1.4097 -0.0126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036640549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:26 Heat of formation + Delta-G solvation = 87.003081 kcal Electronic energy + Delta-G solvation = -25704.547271 eV Core-core repulsion = 22173.804747 eV Total energy + Delta-G solvation = -3530.742524 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 10.04 seconds Orbital eigenvalues (eV) -41.52842 -39.75970 -37.96189 -35.15489 -33.63265 -32.70281 -31.70000 -30.50899 -29.33072 -28.08931 -26.96574 -25.31810 -24.05645 -22.71446 -21.98061 -21.17763 -20.13037 -19.62548 -18.32822 -17.25192 -16.30946 -16.25195 -15.84430 -15.66826 -15.01484 -14.69962 -14.52273 -14.38055 -13.91342 -13.66275 -13.31543 -13.03817 -12.96400 -12.79008 -12.63271 -12.37990 -12.03617 -11.65028 -11.27581 -11.23261 -11.13568 -10.94990 -10.70500 -10.48634 -10.13946 -10.05275 -9.85033 -9.71244 -9.65017 -9.61680 -9.50526 -8.75596 -8.56860 -8.10850 -6.76035 -5.75211 -3.07068 1.49199 2.15043 2.20189 3.28100 3.39269 3.45136 3.46775 3.56580 4.26670 4.48782 4.61575 4.78258 4.82000 5.00623 5.05340 5.22543 5.30753 5.35056 5.36747 5.51351 5.53766 5.59349 5.60773 5.82719 5.93188 6.01476 6.15399 6.27747 6.31342 6.38717 6.40381 6.49051 6.64039 6.64458 6.72633 6.84923 6.99984 7.05354 7.40810 7.51729 7.60111 7.78362 7.81819 8.26376 8.49855 9.19009 9.82358 10.52248 11.37833 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.004060 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.290097 B = 6894.958200 C = 7865.883636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.369 5.369 3 C 0.118 3.882 4 C -0.282 4.282 5 C 0.594 3.406 6 O -0.559 6.559 7 N -0.595 5.595 8 C 0.106 3.894 9 C -0.134 4.134 10 C 0.172 3.828 11 H 0.006 0.994 12 C -0.104 4.104 13 H 0.076 0.924 14 C -0.144 4.144 15 C 0.173 3.827 16 N -0.591 5.591 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.122 3.878 26 C 0.080 3.920 27 N -0.300 5.300 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.252 0.748 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.961 4.318 -2.527 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.033 4.033 4 C -0.297 4.297 5 C 0.382 3.618 6 O -0.439 6.439 7 N -0.325 5.325 8 C -0.017 4.017 9 C -0.174 4.174 10 C 0.064 3.936 11 H 0.024 0.976 12 C -0.124 4.124 13 H 0.095 0.905 14 C -0.183 4.183 15 C 0.048 3.952 16 N -0.316 5.316 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.561 5.561 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.000 4.000 26 C -0.107 4.107 27 N -0.120 5.120 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.202 0.798 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.769 3.709 -2.801 19.336 hybrid contribution 0.959 -0.252 0.574 1.145 sum -17.810 3.458 -2.227 18.279 Atomic orbital electron populations 1.21950 0.73705 1.04841 1.03738 1.48390 1.07104 1.03912 1.55406 1.22877 0.90021 0.93587 0.96792 1.20297 0.93534 0.93764 1.22138 1.17233 0.81787 0.85011 0.77730 1.90725 1.84356 1.20965 1.47879 1.47605 1.09155 1.23024 1.52753 1.21701 1.01435 0.85196 0.93356 1.21237 0.97921 1.02763 0.95506 1.19459 0.86951 0.90820 0.96355 0.97621 1.22277 0.97129 0.97574 0.95457 0.90550 1.23272 0.94181 1.00204 1.00599 1.21468 0.95460 0.84780 0.93482 1.44545 1.09501 1.23608 1.53948 1.18922 1.06854 0.97175 1.12542 0.90663 1.24809 0.99357 0.98863 0.97116 1.69960 1.20696 1.42882 1.22610 0.86173 0.79050 0.81992 0.78965 1.21703 1.21835 1.20617 1.21574 0.84636 0.96631 0.97196 1.24360 0.95229 0.94124 0.96944 1.77203 1.01943 1.07695 1.25179 0.90369 0.88937 0.89173 0.79752 0.90967 0.89775 0.89890 0.93429 0.92018 0.91880 0.91987 0.95149 0.93739 0.89762 0.90406 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.44 59.85 0.68 1.22 16 2 N -0.37 -3.85 3.98 -67.59 -0.27 -4.12 16 3 C 0.12 1.33 11.41 -16.56 -0.19 1.14 16 4 C -0.28 -3.93 5.55 -105.07 -0.58 -4.51 16 5 C 0.59 9.84 7.63 -12.52 -0.10 9.75 16 6 O -0.56 -10.67 16.45 5.28 0.09 -10.59 16 7 N -0.59 -9.89 2.94 -175.86 -0.52 -10.41 16 8 C 0.11 1.68 5.29 -4.64 -0.02 1.65 16 9 C -0.13 -2.38 5.60 -29.07 -0.16 -2.54 16 10 C 0.17 3.46 2.63 -69.96 -0.18 3.28 16 11 H 0.01 0.13 8.06 -51.93 -0.42 -0.29 16 12 C -0.10 -1.87 3.71 -89.08 -0.33 -2.20 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.14 -2.65 6.47 -23.95 -0.15 -2.80 16 15 C 0.17 4.02 4.94 -2.23 -0.01 4.01 16 16 N -0.59 -14.28 3.32 -165.71 -0.55 -14.83 16 17 C -0.23 -5.99 9.37 -15.06 -0.14 -6.13 16 18 H 0.08 1.94 7.38 -52.49 -0.39 1.55 16 19 C 0.00 -0.12 5.41 -17.43 -0.09 -0.21 16 20 N -0.91 -26.03 10.77 55.49 0.60 -25.43 16 21 Si 0.91 21.53 29.56 -169.99 -5.03 16.50 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.12 2.13 5.49 -4.17 -0.02 2.11 16 26 C 0.08 1.05 9.60 -16.98 -0.16 0.89 16 27 N -0.30 -3.89 12.50 30.86 0.39 -3.50 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.19 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.15 4.14 -51.93 -0.22 0.94 16 34 H 0.08 1.58 6.83 -51.93 -0.35 1.23 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 38 H 0.06 1.62 7.16 -51.93 -0.37 1.24 16 39 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 42 H 0.08 1.48 6.49 -51.93 -0.34 1.14 16 43 H 0.20 2.29 6.45 -52.49 -0.34 1.95 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -32.90 337.19 -7.76 -40.66 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.08 Total: 0.98 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.47 Total: 5.64 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.35 Total: -58.28 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.90 -7.76 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036640549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.666 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.04 seconds